Wall clock time and date at job start Sat Apr 11 2020 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99564 * 2 1 4 4 C 1.53002 * 112.85063 * 294.67698 * 3 2 1 5 5 C 1.50697 * 109.47188 * 291.10760 * 4 3 2 6 6 O 1.21286 * 120.00115 * 355.51108 * 5 4 3 7 7 N 1.34781 * 120.00085 * 175.50729 * 5 4 3 8 8 C 1.46497 * 119.99831 * 180.02562 * 7 5 4 9 9 H 1.09000 * 112.85465 * 336.19263 * 8 7 5 10 10 C 1.53779 * 113.69159 * 107.46501 * 8 7 5 11 11 C 1.53781 * 87.08101 * 139.98794 * 10 8 7 12 12 H 1.09002 * 113.69076 * 89.13119 * 11 10 8 13 13 N 1.46900 * 113.61558 * 220.01929 * 11 10 8 14 14 C 1.46899 * 110.99966 * 252.49920 * 13 11 10 15 15 C 1.50707 * 109.47233 * 179.97438 * 14 13 11 16 16 O 1.21290 * 119.99713 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00044 * 179.97438 * 15 14 13 18 18 C 1.37093 * 119.99739 * 179.97438 * 17 15 14 19 19 H 1.07995 * 119.99981 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00057 * 180.02562 * 18 17 15 21 21 N 1.31423 * 119.99579 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00282 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47017 * 270.00139 * 22 20 18 24 24 H 1.48498 * 109.46987 * 30.00130 * 22 20 18 25 25 H 1.48497 * 109.46892 * 150.00418 * 22 20 18 26 26 C 1.53772 * 87.08311 * 334.56811 * 11 10 8 27 27 C 1.53775 * 113.69333 * 65.95021 * 3 2 1 28 28 C 1.53776 * 87.08407 * 89.12662 * 27 3 2 29 29 C 1.53783 * 87.08204 * 25.43197 * 28 27 3 30 30 H 1.08998 * 109.47208 * 296.03224 * 1 2 3 31 31 H 1.09000 * 109.47145 * 56.03433 * 1 2 3 32 32 H 1.09004 * 109.46890 * 176.03437 * 1 2 3 33 33 H 1.08997 * 109.47154 * 171.10687 * 4 3 2 34 34 H 1.08999 * 109.47074 * 51.10912 * 4 3 2 35 35 H 0.96996 * 119.99846 * 359.97438 * 7 5 4 36 36 H 1.08999 * 113.61325 * 25.44102 * 10 8 7 37 37 H 1.09002 * 113.61805 * 254.53514 * 10 8 7 38 38 H 1.00901 * 111.00484 * 128.54539 * 13 11 10 39 39 H 1.09003 * 109.47262 * 59.99817 * 14 13 11 40 40 H 1.09005 * 109.47527 * 299.99683 * 14 13 11 41 41 H 0.96994 * 119.99814 * 0.02562 * 17 15 14 42 42 H 0.96998 * 119.99503 * 179.97438 * 21 20 18 43 43 H 1.09003 * 113.61786 * 139.98320 * 26 11 10 44 44 H 1.09002 * 113.61538 * 270.88061 * 26 11 10 45 45 H 1.09007 * 113.61609 * 203.67051 * 27 3 2 46 46 H 1.08997 * 113.61818 * 334.57159 * 27 3 2 47 47 H 1.09007 * 113.61281 * 270.88422 * 28 27 3 48 48 H 1.08993 * 113.61990 * 139.98575 * 28 27 3 49 49 H 1.08998 * 113.61302 * 220.02426 * 29 28 27 50 50 H 1.08999 * 113.68954 * 89.12912 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7140 2.0876 -1.2812 5 6 2.4496 1.4576 -2.4357 6 8 3.2059 0.5301 -2.2393 7 7 2.2668 1.9249 -3.6867 8 6 2.9815 1.3120 -4.8091 9 1 3.8968 0.8057 -4.5025 10 6 2.0836 0.4614 -5.7229 11 6 2.8684 1.0478 -6.9082 12 1 3.7529 0.4701 -7.1766 13 7 2.0269 1.3742 -8.0673 14 6 2.2434 0.4177 -9.1610 15 6 1.3649 0.7836 -10.3296 16 8 0.6303 1.7461 -10.2581 17 7 1.3955 0.0412 -11.4541 18 6 0.5959 0.3737 -12.5169 19 1 -0.0582 1.2307 -12.4532 20 6 0.6269 -0.3920 -13.6760 21 7 1.4225 -1.4352 -13.7532 22 14 -0.4620 0.0615 -15.1244 23 1 -1.7687 -0.6326 -14.9976 24 1 -0.6809 1.5302 -15.1384 25 1 0.1979 -0.3528 -16.3885 26 6 3.1720 2.2566 -6.0076 27 6 1.7372 2.1033 1.2859 28 6 3.0200 1.4745 1.8549 29 6 3.4949 1.3188 0.4005 30 1 -0.3633 0.4510 0.9234 31 1 -0.3633 0.5741 -0.8523 32 1 -0.3633 -1.0253 -0.0711 33 1 2.0426 3.1199 -1.1608 34 1 0.6423 2.0683 -1.4791 35 1 1.6616 2.6664 -3.8439 36 1 1.0350 0.7584 -5.7038 37 1 2.2229 -0.6121 -5.5954 38 1 2.1895 2.3206 -8.3772 39 1 1.9939 -0.5870 -8.8198 40 1 3.2888 0.4478 -9.4685 41 1 1.9826 -0.7288 -11.5111 42 1 1.4439 -1.9698 -14.5622 43 1 4.1901 2.6326 -6.1098 44 1 2.4210 3.0445 -6.0663 45 1 1.8026 3.1832 1.1520 46 1 0.8311 1.7947 1.8073 47 1 2.8523 0.5250 2.3635 48 1 3.6241 2.1680 2.4397 49 1 4.0077 0.3766 0.2072 50 1 4.0411 2.1833 0.0233 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690333847.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:50 Heat of formation + Delta-G solvation = -70.708799 kcal Electronic energy + Delta-G solvation = -28876.057331 eV Core-core repulsion = 24711.914476 eV Total energy + Delta-G solvation = -4164.142855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.86626 -39.78071 -38.46807 -37.85499 -35.88708 -34.57354 -33.83883 -32.62834 -31.19954 -30.53506 -27.43024 -26.86393 -25.83673 -25.77743 -24.58357 -23.75177 -22.36328 -20.67397 -19.92930 -19.71027 -19.14328 -17.87976 -17.26928 -16.99763 -16.49969 -16.16954 -15.75394 -15.43576 -15.36356 -15.20356 -15.05746 -14.49107 -14.41696 -14.17625 -14.12153 -13.88914 -13.43368 -13.29013 -12.75215 -12.72503 -12.50022 -12.44535 -12.08542 -11.92285 -11.74214 -11.68368 -11.55401 -11.37808 -11.24112 -11.15833 -11.02023 -10.95842 -10.60181 -10.49039 -10.39597 -10.21647 -9.98873 -9.64224 -9.50997 -9.12676 -8.44609 -8.07710 -7.95778 -6.41580 -3.82516 2.49057 2.94033 3.17898 3.26445 3.32159 3.36954 3.91163 4.04377 4.13371 4.21724 4.28985 4.39952 4.42133 4.48268 4.50564 4.71700 4.83973 4.88426 4.90290 4.93067 4.97856 5.08598 5.17092 5.21000 5.26551 5.30815 5.34926 5.42823 5.46035 5.52993 5.57828 5.69589 5.80489 5.83373 5.87552 5.89659 5.94238 5.98736 6.05247 6.11615 6.28977 6.46837 6.95191 7.25722 7.35502 7.55190 7.65687 8.06405 8.09826 8.61370 9.17842 9.54551 10.05894 10.76129 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030623 B = 0.001545 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.120499 B =18113.055261 C =18355.461350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.348 6.348 3 C 0.109 3.891 4 C -0.162 4.162 5 C 0.515 3.485 6 O -0.524 6.524 7 N -0.721 5.721 8 C 0.123 3.877 9 H 0.113 0.887 10 C -0.137 4.137 11 C 0.062 3.938 12 H 0.075 0.925 13 N -0.654 5.654 14 C 0.049 3.951 15 C 0.441 3.559 16 O -0.585 6.585 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.278 1.278 24 H -0.270 1.270 25 H -0.284 1.284 26 C -0.148 4.148 27 C -0.165 4.165 28 C -0.139 4.139 29 C -0.110 4.110 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.400 0.600 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.350 0.650 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.083 0.917 48 H 0.068 0.932 49 H 0.084 0.916 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.818 7.004 29.212 30.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.266 6.266 3 C 0.068 3.932 4 C -0.202 4.202 5 C 0.301 3.699 6 O -0.399 6.399 7 N -0.372 5.372 8 C 0.018 3.982 9 H 0.131 0.869 10 C -0.176 4.176 11 C -0.049 4.049 12 H 0.093 0.907 13 N -0.287 5.287 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.469 6.469 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.204 1.204 24 H -0.194 1.194 25 H -0.209 1.209 26 C -0.187 4.187 27 C -0.203 4.203 28 C -0.176 4.176 29 C -0.148 4.148 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.234 0.766 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.170 0.830 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.226 0.774 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.091 0.909 47 H 0.102 0.898 48 H 0.087 0.913 49 H 0.103 0.897 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.474 6.342 29.471 30.345 hybrid contribution 0.035 0.484 -1.398 1.480 sum 3.508 6.825 28.074 29.104 Atomic orbital electron populations 1.22787 0.81619 1.02927 0.99874 1.88045 1.19060 1.25015 1.94498 1.22222 0.96202 0.83759 0.91001 1.22223 1.02174 1.01279 0.94508 1.20455 0.82309 0.83479 0.83703 1.90723 1.36848 1.27812 1.84481 1.46018 1.47310 1.37262 1.06659 1.22344 0.96704 0.95347 0.83827 0.86899 1.23564 1.00320 0.99754 0.93986 1.22804 0.94814 0.96849 0.90468 0.90718 1.60206 1.55726 1.06632 1.06102 1.21745 0.97598 0.97436 0.91564 1.19828 0.87207 0.86173 0.84179 1.90514 1.43806 1.30152 1.82440 1.41868 1.38489 1.27294 1.12364 1.19705 1.19168 1.12665 0.91435 0.87930 1.25269 0.97836 0.95693 0.99154 1.69620 1.38134 1.17175 1.29345 0.85849 0.79491 0.78989 0.79899 1.20395 1.19447 1.20938 1.23620 1.02456 0.97670 0.94973 1.23582 0.99329 1.00160 0.97199 1.22815 0.96748 1.01171 0.96883 1.22853 0.93769 1.03534 0.94608 0.93969 0.93998 0.89453 0.87792 0.88764 0.76602 0.88879 0.91392 0.82966 0.89592 0.93793 0.77443 0.91873 0.90886 0.88779 0.89210 0.90896 0.89825 0.91301 0.89712 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.63 101.05 1.07 1.26 16 2 O -0.35 -3.69 10.29 -36.88 -0.38 -4.07 16 3 C 0.11 0.90 0.39 -89.81 -0.04 0.87 16 4 C -0.16 -1.13 5.15 -27.88 -0.14 -1.27 16 5 C 0.51 5.24 7.62 -10.98 -0.08 5.16 16 6 O -0.52 -7.37 14.30 3.90 0.06 -7.32 16 7 N -0.72 -6.30 5.36 -53.02 -0.28 -6.58 16 8 C 0.12 1.24 4.24 -67.12 -0.28 0.96 16 9 H 0.11 1.27 7.46 -51.93 -0.39 0.88 16 10 C -0.14 -1.61 7.68 -25.92 -0.20 -1.81 16 11 C 0.06 0.74 4.14 -66.91 -0.28 0.46 16 12 H 0.07 0.86 7.87 -51.93 -0.41 0.45 16 13 N -0.65 -10.29 6.18 -107.13 -0.66 -10.95 16 14 C 0.05 0.87 6.01 -4.97 -0.03 0.84 16 15 C 0.44 10.43 7.82 -10.98 -0.09 10.34 16 16 O -0.58 -15.86 15.78 5.55 0.09 -15.77 16 17 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 18 C -0.30 -8.42 9.68 -14.94 -0.14 -8.56 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 21 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 22 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 C -0.15 -1.41 7.40 -25.92 -0.19 -1.60 16 27 C -0.17 -0.99 7.21 -25.92 -0.19 -1.18 16 28 C -0.14 -0.93 8.02 -25.92 -0.21 -1.14 16 29 C -0.11 -0.94 6.07 -25.92 -0.16 -1.10 16 30 H 0.04 0.25 6.85 -51.93 -0.36 -0.11 16 31 H 0.04 0.28 6.50 -51.93 -0.34 -0.06 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.48 7.99 -51.93 -0.42 0.06 16 34 H 0.09 0.54 6.55 -51.93 -0.34 0.20 16 35 H 0.40 2.55 8.73 -40.82 -0.36 2.19 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.35 5.60 8.25 -39.29 -0.32 5.28 16 39 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 41 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 45 H 0.09 0.40 8.00 -51.93 -0.42 -0.02 16 46 H 0.07 0.42 6.81 -51.93 -0.35 0.07 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.92 7.98 -51.93 -0.41 0.51 16 50 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 406.37 15.07 6.12 6.12 Total: -1.00 -34.19 406.37 -8.63 -42.82 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -8.16 Total: 14.28 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -1.05 Total: 3.73 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.28 Total: -55.86 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.24 Total: -27.15 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.19 -8.63 -42.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690333847.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.891 kcal (2) G-P(sol) polarization free energy of solvation -34.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds