Wall clock time and date at job start Sat Apr 11 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99564 * 2 1 4 4 C 1.53002 * 112.85063 * 294.67698 * 3 2 1 5 5 C 1.50697 * 109.47188 * 291.10760 * 4 3 2 6 6 O 1.21286 * 120.00115 * 355.51108 * 5 4 3 7 7 N 1.34781 * 120.00085 * 175.50729 * 5 4 3 8 8 C 1.46497 * 119.99831 * 180.02562 * 7 5 4 9 9 H 1.09000 * 112.85465 * 336.19263 * 8 7 5 10 10 C 1.53779 * 113.69159 * 107.46501 * 8 7 5 11 11 C 1.53781 * 87.08101 * 139.98794 * 10 8 7 12 12 H 1.09002 * 113.69076 * 89.13119 * 11 10 8 13 13 N 1.46900 * 113.61558 * 220.01929 * 11 10 8 14 14 C 1.46899 * 110.99966 * 252.49920 * 13 11 10 15 15 C 1.50707 * 109.47233 * 179.97438 * 14 13 11 16 16 O 1.21290 * 119.99713 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00044 * 179.97438 * 15 14 13 18 18 C 1.37093 * 119.99739 * 179.97438 * 17 15 14 19 19 H 1.07995 * 119.99981 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00057 * 180.02562 * 18 17 15 21 21 N 1.31423 * 119.99579 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00282 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47017 * 270.00139 * 22 20 18 24 24 H 1.48498 * 109.46987 * 30.00130 * 22 20 18 25 25 H 1.48497 * 109.46892 * 150.00418 * 22 20 18 26 26 C 1.53772 * 87.08311 * 334.56811 * 11 10 8 27 27 C 1.53775 * 113.69333 * 65.95021 * 3 2 1 28 28 C 1.53776 * 87.08407 * 89.12662 * 27 3 2 29 29 C 1.53783 * 87.08204 * 25.43197 * 28 27 3 30 30 H 1.08998 * 109.47208 * 296.03224 * 1 2 3 31 31 H 1.09000 * 109.47145 * 56.03433 * 1 2 3 32 32 H 1.09004 * 109.46890 * 176.03437 * 1 2 3 33 33 H 1.08997 * 109.47154 * 171.10687 * 4 3 2 34 34 H 1.08999 * 109.47074 * 51.10912 * 4 3 2 35 35 H 0.96996 * 119.99846 * 359.97438 * 7 5 4 36 36 H 1.08999 * 113.61325 * 25.44102 * 10 8 7 37 37 H 1.09002 * 113.61805 * 254.53514 * 10 8 7 38 38 H 1.00901 * 111.00484 * 128.54539 * 13 11 10 39 39 H 1.09003 * 109.47262 * 59.99817 * 14 13 11 40 40 H 1.09005 * 109.47527 * 299.99683 * 14 13 11 41 41 H 0.96994 * 119.99814 * 0.02562 * 17 15 14 42 42 H 0.96998 * 119.99503 * 179.97438 * 21 20 18 43 43 H 1.09003 * 113.61786 * 139.98320 * 26 11 10 44 44 H 1.09002 * 113.61538 * 270.88061 * 26 11 10 45 45 H 1.09007 * 113.61609 * 203.67051 * 27 3 2 46 46 H 1.08997 * 113.61818 * 334.57159 * 27 3 2 47 47 H 1.09007 * 113.61281 * 270.88422 * 28 27 3 48 48 H 1.08993 * 113.61990 * 139.98575 * 28 27 3 49 49 H 1.08998 * 113.61302 * 220.02426 * 29 28 27 50 50 H 1.08999 * 113.68954 * 89.12912 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7140 2.0876 -1.2812 5 6 2.4496 1.4576 -2.4357 6 8 3.2059 0.5301 -2.2393 7 7 2.2668 1.9249 -3.6867 8 6 2.9815 1.3120 -4.8091 9 1 3.8968 0.8057 -4.5025 10 6 2.0836 0.4614 -5.7229 11 6 2.8684 1.0478 -6.9082 12 1 3.7529 0.4701 -7.1766 13 7 2.0269 1.3742 -8.0673 14 6 2.2434 0.4177 -9.1610 15 6 1.3649 0.7836 -10.3296 16 8 0.6303 1.7461 -10.2581 17 7 1.3955 0.0412 -11.4541 18 6 0.5959 0.3737 -12.5169 19 1 -0.0582 1.2307 -12.4532 20 6 0.6269 -0.3920 -13.6760 21 7 1.4225 -1.4352 -13.7532 22 14 -0.4620 0.0615 -15.1244 23 1 -1.7687 -0.6326 -14.9976 24 1 -0.6809 1.5302 -15.1384 25 1 0.1979 -0.3528 -16.3885 26 6 3.1720 2.2566 -6.0076 27 6 1.7372 2.1033 1.2859 28 6 3.0200 1.4745 1.8549 29 6 3.4949 1.3188 0.4005 30 1 -0.3633 0.4510 0.9234 31 1 -0.3633 0.5741 -0.8523 32 1 -0.3633 -1.0253 -0.0711 33 1 2.0426 3.1199 -1.1608 34 1 0.6423 2.0683 -1.4791 35 1 1.6616 2.6664 -3.8439 36 1 1.0350 0.7584 -5.7038 37 1 2.2229 -0.6121 -5.5954 38 1 2.1895 2.3206 -8.3772 39 1 1.9939 -0.5870 -8.8198 40 1 3.2888 0.4478 -9.4685 41 1 1.9826 -0.7288 -11.5111 42 1 1.4439 -1.9698 -14.5622 43 1 4.1901 2.6326 -6.1098 44 1 2.4210 3.0445 -6.0663 45 1 1.8026 3.1832 1.1520 46 1 0.8311 1.7947 1.8073 47 1 2.8523 0.5250 2.3635 48 1 3.6241 2.1680 2.4397 49 1 4.0077 0.3766 0.2072 50 1 4.0411 2.1833 0.0233 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690333847.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:49 Heat of formation + Delta-G solvation = -97.310419 kcal Electronic energy + Delta-G solvation = -28877.210864 eV Core-core repulsion = 24711.914476 eV Total energy + Delta-G solvation = -4165.296388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55367 -40.64379 -40.01920 -39.00722 -36.50387 -36.12605 -35.39603 -33.71838 -33.21201 -31.17848 -28.45331 -27.97061 -26.68925 -26.41417 -26.12217 -24.72750 -23.22323 -21.46831 -21.18284 -20.62584 -20.31273 -19.89400 -18.04961 -17.94928 -17.49641 -17.07424 -16.87704 -16.66670 -16.37324 -16.20079 -16.03929 -15.87049 -15.70127 -15.17820 -15.05589 -14.90798 -14.68845 -14.32960 -14.21117 -13.51544 -13.40041 -13.33084 -13.23505 -13.19866 -12.94651 -12.86111 -12.55909 -12.42646 -12.26793 -12.21806 -12.13106 -11.95542 -11.90338 -11.67601 -11.53674 -11.50086 -11.09112 -10.73776 -10.35588 -10.26702 -10.02281 -9.94474 -9.32759 -8.47056 -5.96147 1.38116 1.41851 1.54767 1.73131 2.04448 2.21680 2.30149 2.80274 2.98626 3.20274 3.47327 3.50846 3.59641 3.66514 3.70271 3.72794 3.95113 3.96830 4.01670 4.16350 4.30403 4.35149 4.41148 4.45453 4.49792 4.53761 4.58337 4.63099 4.65243 4.80420 4.81369 4.85081 4.86550 4.91054 5.02516 5.06886 5.09108 5.17875 5.23300 5.28608 5.40499 5.42164 5.63716 5.92136 6.13832 6.38751 6.43220 6.59264 6.65789 7.11755 7.37349 7.55466 8.10300 8.70306 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030623 B = 0.001545 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.120499 B =18113.055261 C =18355.461350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.383 6.383 3 C 0.096 3.904 4 C -0.156 4.156 5 C 0.510 3.490 6 O -0.569 6.569 7 N -0.711 5.711 8 C 0.131 3.869 9 H 0.102 0.898 10 C -0.138 4.138 11 C 0.058 3.942 12 H 0.084 0.916 13 N -0.665 5.665 14 C 0.064 3.936 15 C 0.438 3.562 16 O -0.622 6.622 17 N -0.574 5.574 18 C -0.335 4.335 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.995 3.005 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.271 1.271 26 C -0.130 4.130 27 C -0.150 4.150 28 C -0.137 4.137 29 C -0.118 4.118 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.111 0.889 35 H 0.414 0.586 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.348 0.652 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.114 0.886 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.084 0.916 49 H 0.048 0.952 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.563 8.561 29.929 31.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.303 6.303 3 C 0.056 3.944 4 C -0.195 4.195 5 C 0.297 3.703 6 O -0.447 6.447 7 N -0.363 5.363 8 C 0.025 3.975 9 H 0.120 0.880 10 C -0.178 4.178 11 C -0.053 4.053 12 H 0.102 0.898 13 N -0.298 5.298 14 C -0.069 4.069 15 C 0.226 3.774 16 O -0.509 6.509 17 N -0.211 5.211 18 C -0.465 4.465 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.818 3.182 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.169 4.169 27 C -0.187 4.187 28 C -0.174 4.174 29 C -0.155 4.155 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.154 0.846 34 H 0.129 0.871 35 H 0.251 0.749 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.168 0.832 39 H 0.115 0.885 40 H 0.086 0.914 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.132 0.868 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.103 0.897 49 H 0.067 0.933 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.217 7.906 30.202 31.385 hybrid contribution 0.134 -0.037 -1.574 1.580 sum 3.351 7.868 28.628 29.878 Atomic orbital electron populations 1.22908 0.80386 1.03241 1.01045 1.87997 1.20638 1.26828 1.94801 1.22430 0.95747 0.83529 0.92708 1.22279 1.02691 1.02264 0.92307 1.21082 0.81736 0.82848 0.84609 1.90715 1.38958 1.29921 1.85156 1.45938 1.47087 1.37289 1.06017 1.22115 0.95882 0.95237 0.84316 0.88018 1.23543 1.00060 0.99462 0.94761 1.22921 0.94619 0.98598 0.89140 0.89804 1.60185 1.57355 1.06083 1.06184 1.21596 0.97254 0.98270 0.89764 1.20870 0.86805 0.84898 0.84877 1.90480 1.45467 1.31658 1.83281 1.41947 1.38619 1.27823 1.12681 1.19690 1.20512 1.13054 0.93244 0.90203 1.26066 0.98817 0.95304 1.01131 1.69683 1.38705 1.17529 1.30240 0.84904 0.77904 0.78505 0.76876 1.19722 1.19637 1.19542 1.23512 1.03628 0.96722 0.92998 1.23547 0.98835 1.01105 0.95232 1.22788 0.97586 1.01149 0.95874 1.22895 0.94199 1.02122 0.96318 0.92251 0.93317 0.89668 0.84640 0.87087 0.74946 0.89839 0.92421 0.83208 0.88467 0.91413 0.77027 0.91308 0.89265 0.88026 0.86759 0.90406 0.91097 0.89703 0.93259 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.63 113.37 1.20 1.49 16 2 O -0.38 -8.12 10.29 -147.40 -1.52 -9.64 16 3 C 0.10 1.48 0.39 -10.27 0.00 1.48 16 4 C -0.16 -1.82 5.15 29.85 0.15 -1.67 16 5 C 0.51 9.85 7.62 87.66 0.67 10.52 16 6 O -0.57 -16.30 14.30 -1.47 -0.02 -16.32 16 7 N -0.71 -11.26 5.36 -440.03 -2.36 -13.62 16 8 C 0.13 2.48 4.24 45.52 0.19 2.67 16 9 H 0.10 2.24 7.46 -2.39 -0.02 2.22 16 10 C -0.14 -3.17 7.68 31.12 0.24 -2.93 16 11 C 0.06 1.29 4.14 45.44 0.19 1.48 16 12 H 0.08 1.77 7.87 -2.39 -0.02 1.75 16 13 N -0.67 -20.18 6.18 -492.85 -3.05 -23.23 16 14 C 0.06 2.19 6.01 85.56 0.51 2.70 16 15 C 0.44 20.87 7.82 87.66 0.69 21.56 16 16 O -0.62 -34.29 15.78 -3.06 -0.05 -34.34 16 17 N -0.57 -29.64 5.29 -306.98 -1.62 -31.27 16 18 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 19 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 20 C -0.01 -0.72 5.50 84.92 0.47 -0.26 16 21 N -0.92 -49.96 13.05 21.66 0.28 -49.68 16 22 Si 0.99 42.97 29.55 68.60 2.03 44.99 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 C -0.13 -2.18 7.40 31.12 0.23 -1.95 16 27 C -0.15 -1.43 7.21 31.12 0.22 -1.20 16 28 C -0.14 -1.70 8.02 31.12 0.25 -1.45 16 29 C -0.12 -2.00 6.07 31.12 0.19 -1.81 16 30 H 0.06 0.60 6.85 -2.39 -0.02 0.58 16 31 H 0.05 0.59 6.50 -2.39 -0.02 0.57 16 32 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.14 0.72 7.99 -2.39 -0.02 0.70 16 34 H 0.11 0.94 6.55 -2.39 -0.02 0.93 16 35 H 0.41 4.24 8.73 -92.71 -0.81 3.43 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.35 10.77 8.25 -89.69 -0.74 10.03 16 39 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.07 2.03 8.13 -2.38 -0.02 2.01 16 41 H 0.40 19.50 7.90 -92.71 -0.73 18.77 16 42 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 43 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.10 1.60 8.12 -2.39 -0.02 1.58 16 45 H 0.11 0.55 8.00 -2.38 -0.02 0.53 16 46 H 0.08 0.69 6.81 -2.39 -0.02 0.67 16 47 H 0.07 1.04 8.14 -2.38 -0.02 1.03 16 48 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.05 1.17 7.98 -2.39 -0.02 1.15 16 50 H 0.10 1.38 8.10 -2.39 -0.02 1.36 16 Total: -1.00 -76.13 406.37 -1.59 -77.72 By element: Atomic # 1 Polarization: 44.38 SS G_CDS: -1.30 Total: 43.08 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 6.02 Total: 12.30 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -6.74 Total: -117.79 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -1.59 Total: -60.29 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -76.13 -1.59 -77.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690333847.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.594 kcal (2) G-P(sol) polarization free energy of solvation -76.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds