Wall clock time and date at job start Sat Apr 11 2020 05:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46895 * 111.00119 * 2 1 4 4 C 1.50707 * 109.47065 * 293.95562 * 3 2 1 5 5 O 1.21296 * 119.99765 * 359.97438 * 4 3 2 6 6 N 1.34767 * 119.99873 * 179.97438 * 4 3 2 7 7 C 1.37099 * 119.99948 * 179.97438 * 6 4 3 8 8 H 1.07998 * 120.00070 * 0.02562 * 7 6 4 9 9 C 1.38958 * 120.00358 * 180.02562 * 7 6 4 10 10 N 1.31405 * 120.00077 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99623 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46711 * 90.00113 * 11 9 7 13 13 H 1.48493 * 109.47140 * 210.00037 * 11 9 7 14 14 H 1.48499 * 109.47513 * 330.00316 * 11 9 7 15 15 C 1.46903 * 110.99668 * 123.95556 * 2 1 3 16 16 H 1.09002 * 109.52128 * 295.95976 * 15 2 1 17 17 C 1.53041 * 109.49156 * 175.88603 * 15 2 1 18 18 C 1.53046 * 109.53818 * 178.68315 * 17 15 2 19 19 C 1.52761 * 109.38310 * 61.23461 * 18 17 15 20 20 N 1.46923 * 109.01071 * 305.59435 * 19 18 17 21 21 C 1.34779 * 120.63133 * 233.58487 * 20 19 18 22 22 O 1.21277 * 120.00405 * 179.71832 * 21 20 19 23 23 C 1.50701 * 119.99852 * 359.71543 * 21 20 19 24 24 H 1.09006 * 110.41527 * 57.31503 * 23 21 20 25 25 C 1.54477 * 110.37389 * 295.00399 * 23 21 20 26 26 C 1.54510 * 104.18108 * 217.25757 * 25 23 21 27 27 C 1.54478 * 104.06500 * 359.93120 * 26 25 23 28 28 O 1.44415 * 104.80258 * 23.97587 * 27 26 25 29 29 C 1.46932 * 118.74090 * 53.30583 * 20 19 18 30 30 H 1.09000 * 109.46944 * 296.04334 * 1 2 3 31 31 H 1.08996 * 109.47233 * 56.04834 * 1 2 3 32 32 H 1.09005 * 109.46759 * 176.04693 * 1 2 3 33 33 H 1.08998 * 109.47156 * 53.95044 * 3 2 1 34 34 H 1.08999 * 109.47337 * 173.95274 * 3 2 1 35 35 H 0.96998 * 120.00669 * 0.02562 * 6 4 3 36 36 H 0.97007 * 119.99861 * 179.97438 * 10 9 7 37 37 H 1.09008 * 109.46189 * 298.69680 * 17 15 2 38 38 H 1.08998 * 109.46482 * 58.65838 * 17 15 2 39 39 H 1.08994 * 109.50164 * 181.31592 * 18 17 15 40 40 H 1.09005 * 109.49059 * 301.41479 * 18 17 15 41 41 H 1.09000 * 109.50871 * 185.71016 * 19 18 17 42 42 H 1.08999 * 109.43102 * 65.43005 * 19 18 17 43 43 H 1.09002 * 110.51371 * 98.54272 * 25 23 21 44 44 H 1.08994 * 110.51108 * 335.96920 * 25 23 21 45 45 H 1.09000 * 110.51039 * 118.57850 * 26 25 23 46 46 H 1.08999 * 110.50726 * 241.28208 * 26 25 23 47 47 H 1.08998 * 110.37372 * 142.81215 * 27 26 25 48 48 H 1.09003 * 110.36949 * 265.14479 * 27 26 25 49 49 H 1.08995 * 109.58421 * 66.42977 * 29 20 19 50 50 H 1.08997 * 109.58564 * 186.71917 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0054 1.4452 -2.1412 6 7 2.0180 3.3201 -1.5233 7 6 1.6923 3.9346 -2.7048 8 1 1.1300 3.3988 -3.4551 9 6 2.0856 5.2470 -2.9369 10 7 1.7730 5.8362 -4.0691 11 14 3.0576 6.1741 -1.6387 12 1 4.5103 5.9612 -1.8622 13 1 2.7498 7.6238 -1.7313 14 1 2.6857 5.6742 -0.2908 15 6 1.9954 -0.7660 1.1376 16 1 1.7061 -0.2798 2.0693 17 6 3.5218 -0.8302 1.0476 18 6 4.0736 -1.6000 2.2498 19 6 3.5274 -3.0265 2.2324 20 7 2.0604 -2.9765 2.1690 21 6 1.3110 -3.6372 3.0737 22 8 0.1009 -3.5839 3.0137 23 6 1.9768 -4.4421 4.1599 24 1 2.6449 -3.8107 4.7458 25 6 2.7556 -5.6284 3.5496 26 6 2.5455 -6.7788 4.5595 27 6 1.6653 -6.1528 5.6638 28 8 0.9855 -5.0555 5.0162 29 6 1.4257 -2.1876 1.1042 30 1 -0.3633 0.4512 0.9233 31 1 -0.3633 0.5739 -0.8524 32 1 -0.3633 -1.0253 -0.0709 33 1 1.5611 1.9273 0.8309 34 1 3.0798 1.3444 0.1083 35 1 2.5234 3.8013 -0.8496 36 1 2.0473 6.7525 -4.2309 37 1 3.8103 -1.3386 0.1275 38 1 3.9284 0.1811 1.0462 39 1 5.1620 -1.6252 2.1973 40 1 3.7646 -1.1059 3.1710 41 1 3.8364 -3.5457 3.1397 42 1 3.9132 -3.5519 1.3588 43 1 3.8146 -5.3856 3.4621 44 1 2.3442 -5.8949 2.5761 45 1 2.0281 -7.6131 4.0858 46 1 3.5007 -7.1047 4.9712 47 1 0.9436 -6.8816 6.0326 48 1 2.2860 -5.7853 6.4810 49 1 1.6367 -2.6432 0.1368 50 1 0.3483 -2.1556 1.2660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690800498.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:55 Heat of formation + Delta-G solvation = -89.793007 kcal Electronic energy + Delta-G solvation = -30427.063376 eV Core-core repulsion = 26262.092968 eV Total energy + Delta-G solvation = -4164.970408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00506 -39.52961 -38.62705 -37.62965 -35.91291 -33.93023 -32.94735 -32.41563 -31.67902 -31.06976 -29.48422 -28.23500 -25.96092 -25.14278 -24.18856 -23.40442 -22.22566 -21.80809 -20.47709 -19.48197 -19.32275 -18.25110 -17.88671 -16.93447 -16.70054 -16.21210 -15.57815 -15.54238 -15.14721 -15.06205 -14.80741 -14.71525 -14.45908 -14.25800 -13.99284 -13.89755 -13.49961 -13.29262 -13.08185 -12.98506 -12.78189 -12.41560 -12.33348 -12.22053 -11.93127 -11.85171 -11.75553 -11.63012 -11.39932 -11.29635 -11.16131 -10.95811 -10.90728 -10.60685 -10.47725 -10.44408 -9.97301 -9.85427 -9.53223 -8.93411 -8.55805 -8.17567 -7.97249 -6.30476 -3.81699 2.27424 2.42586 3.02305 3.06253 3.14754 3.47949 3.74294 3.88431 3.90063 4.09658 4.10453 4.26844 4.44340 4.49555 4.57630 4.62003 4.62635 4.76166 4.80543 4.85865 5.00312 5.05666 5.15282 5.17967 5.20412 5.26269 5.30057 5.39634 5.43670 5.48687 5.53076 5.58245 5.64541 5.69190 5.73707 5.84693 5.89622 5.93580 5.98273 6.10180 6.16017 6.29963 6.53523 7.05781 7.14806 7.29907 7.59192 7.88897 8.15558 8.61067 8.96197 9.43254 9.84560 10.82664 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029340 B = 0.002119 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.090191 B =13211.941125 C =13599.102220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.511 5.511 3 C 0.040 3.960 4 C 0.454 3.546 5 O -0.558 6.558 6 N -0.592 5.592 7 C -0.303 4.303 8 H 0.120 0.880 9 C 0.041 3.959 10 N -0.882 5.882 11 Si 0.879 3.121 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.270 1.270 15 C 0.072 3.928 16 H 0.041 0.959 17 C -0.119 4.119 18 C -0.135 4.135 19 C 0.101 3.899 20 N -0.607 5.607 21 C 0.520 3.480 22 O -0.518 6.518 23 C 0.059 3.941 24 H 0.095 0.905 25 C -0.146 4.146 26 C -0.154 4.154 27 C 0.041 3.959 28 O -0.345 6.345 29 C 0.119 3.881 30 H 0.016 0.984 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.189 -21.963 21.075 31.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.235 5.235 3 C -0.091 4.091 4 C 0.240 3.760 5 O -0.439 6.439 6 N -0.231 5.231 7 C -0.432 4.432 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.522 5.522 11 Si 0.706 3.294 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.196 1.196 15 C -0.038 4.038 16 H 0.059 0.941 17 C -0.157 4.157 18 C -0.173 4.173 19 C -0.021 4.021 20 N -0.343 5.343 21 C 0.307 3.693 22 O -0.392 6.392 23 C -0.002 4.002 24 H 0.112 0.888 25 C -0.184 4.184 26 C -0.192 4.192 27 C -0.036 4.036 28 O -0.263 6.263 29 C -0.003 4.003 30 H 0.035 0.965 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.202 0.798 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.115 0.885 48 H 0.081 0.919 49 H 0.100 0.900 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.004 -22.327 19.919 30.973 hybrid contribution 0.893 1.382 1.700 2.366 sum 8.897 -20.945 21.619 31.388 Atomic orbital electron populations 1.22624 0.86322 1.02464 1.01667 1.61587 1.08857 1.12513 1.40536 1.21968 1.01078 0.89109 0.96984 1.19614 0.85075 0.82436 0.88921 1.90532 1.42521 1.64105 1.46764 1.42206 1.51142 1.11935 1.17860 1.19425 1.33785 0.96303 0.93699 0.86254 1.25037 0.97938 0.96501 0.96737 1.69621 1.45705 1.13590 1.23251 0.86679 0.80878 0.80510 0.81354 1.19621 1.20215 1.19567 1.21943 0.95267 0.93942 0.92617 0.94065 1.21688 0.94158 1.01264 0.98556 1.21870 1.00890 0.95165 0.99404 1.21864 0.79424 0.98013 1.02845 1.48002 1.06785 1.49560 1.29940 1.20158 0.87408 0.79735 0.82036 1.90740 1.13774 1.61669 1.73058 1.22878 0.90385 0.95427 0.91537 0.88777 1.23024 1.00980 0.93971 1.00457 1.22958 1.01010 0.98689 0.96524 1.23510 0.96087 0.89015 0.94999 1.89324 1.32711 1.45527 1.58747 1.21681 0.98956 0.89777 0.89853 0.96543 0.88318 0.91652 0.93423 0.88929 0.79785 0.91642 0.90287 0.90963 0.90015 0.91506 0.89795 0.90582 0.89294 0.89919 0.90206 0.89987 0.88511 0.91890 0.89990 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.75 60.07 0.53 0.80 16 2 N -0.51 -8.11 4.37 -236.18 -1.03 -9.14 16 3 C 0.04 0.67 5.27 -4.98 -0.03 0.64 16 4 C 0.45 10.23 7.47 -10.99 -0.08 10.14 16 5 O -0.56 -14.74 13.91 5.54 0.08 -14.66 16 6 N -0.59 -14.02 5.09 -10.96 -0.06 -14.07 16 7 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 8 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 9 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 10 N -0.88 -25.74 13.96 55.50 0.77 -24.96 16 11 Si 0.88 19.30 27.74 -169.99 -4.71 14.58 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 15 C 0.07 0.89 2.09 -67.59 -0.14 0.75 16 16 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 17 C -0.12 -1.17 5.01 -26.69 -0.13 -1.30 16 18 C -0.13 -0.91 6.07 -26.83 -0.16 -1.07 16 19 C 0.10 0.65 5.69 -3.93 -0.02 0.62 16 20 N -0.61 -6.13 2.98 -173.04 -0.52 -6.64 16 21 C 0.52 6.28 7.02 -10.98 -0.08 6.21 16 22 O -0.52 -8.74 15.97 -13.55 -0.22 -8.95 16 23 C 0.06 0.51 2.77 -27.11 -0.08 0.44 16 24 H 0.09 0.61 7.57 -51.93 -0.39 0.22 16 25 C -0.15 -0.83 5.54 -25.16 -0.14 -0.97 16 26 C -0.15 -0.73 7.09 -25.16 -0.18 -0.91 16 27 C 0.04 0.26 7.64 37.93 0.29 0.55 16 28 O -0.35 -3.82 10.93 -54.34 -0.59 -4.42 16 29 C 0.12 1.45 5.15 -3.71 -0.02 1.43 16 30 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.10 1.95 5.82 -51.93 -0.30 1.65 16 32 H 0.06 0.98 6.37 -51.93 -0.33 0.65 16 33 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.09 1.33 5.81 -51.93 -0.30 1.02 16 35 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.07 0.72 6.14 -51.93 -0.32 0.40 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.34 4.49 -51.93 -0.23 0.11 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.28 6.86 -51.93 -0.36 -0.08 16 44 H 0.08 0.56 7.86 -51.93 -0.41 0.16 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.10 1.35 5.56 -51.93 -0.29 1.07 16 LS Contribution 382.50 15.07 5.76 5.76 Total: -1.00 -36.11 382.50 -8.80 -44.90 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.80 Total: 7.95 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -0.49 Total: 9.64 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.83 Total: -54.82 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.73 Total: -28.03 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.11 -8.80 -44.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690800498.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.889 kcal (2) G-P(sol) polarization free energy of solvation -36.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds