Wall clock time and date at job start Sat Apr 11 2020 05:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46895 * 111.00119 * 2 1 4 4 C 1.50707 * 109.47065 * 293.95562 * 3 2 1 5 5 O 1.21296 * 119.99765 * 359.97438 * 4 3 2 6 6 N 1.34767 * 119.99873 * 179.97438 * 4 3 2 7 7 C 1.37099 * 119.99948 * 179.97438 * 6 4 3 8 8 H 1.07998 * 120.00070 * 0.02562 * 7 6 4 9 9 C 1.38958 * 120.00358 * 180.02562 * 7 6 4 10 10 N 1.31405 * 120.00077 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99623 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46711 * 90.00113 * 11 9 7 13 13 H 1.48493 * 109.47140 * 210.00037 * 11 9 7 14 14 H 1.48499 * 109.47513 * 330.00316 * 11 9 7 15 15 C 1.46903 * 110.99668 * 123.95556 * 2 1 3 16 16 H 1.09002 * 109.52128 * 295.95976 * 15 2 1 17 17 C 1.53041 * 109.49156 * 175.88603 * 15 2 1 18 18 C 1.53046 * 109.53818 * 178.68315 * 17 15 2 19 19 C 1.52761 * 109.38310 * 61.23461 * 18 17 15 20 20 N 1.46923 * 109.01071 * 305.59435 * 19 18 17 21 21 C 1.34779 * 120.63133 * 233.58487 * 20 19 18 22 22 O 1.21277 * 120.00405 * 179.71832 * 21 20 19 23 23 C 1.50701 * 119.99852 * 359.71543 * 21 20 19 24 24 H 1.09006 * 110.41527 * 57.31503 * 23 21 20 25 25 C 1.54477 * 110.37389 * 295.00399 * 23 21 20 26 26 C 1.54510 * 104.18108 * 217.25757 * 25 23 21 27 27 C 1.54478 * 104.06500 * 359.93120 * 26 25 23 28 28 O 1.44415 * 104.80258 * 23.97587 * 27 26 25 29 29 C 1.46932 * 118.74090 * 53.30583 * 20 19 18 30 30 H 1.09000 * 109.46944 * 296.04334 * 1 2 3 31 31 H 1.08996 * 109.47233 * 56.04834 * 1 2 3 32 32 H 1.09005 * 109.46759 * 176.04693 * 1 2 3 33 33 H 1.08998 * 109.47156 * 53.95044 * 3 2 1 34 34 H 1.08999 * 109.47337 * 173.95274 * 3 2 1 35 35 H 0.96998 * 120.00669 * 0.02562 * 6 4 3 36 36 H 0.97007 * 119.99861 * 179.97438 * 10 9 7 37 37 H 1.09008 * 109.46189 * 298.69680 * 17 15 2 38 38 H 1.08998 * 109.46482 * 58.65838 * 17 15 2 39 39 H 1.08994 * 109.50164 * 181.31592 * 18 17 15 40 40 H 1.09005 * 109.49059 * 301.41479 * 18 17 15 41 41 H 1.09000 * 109.50871 * 185.71016 * 19 18 17 42 42 H 1.08999 * 109.43102 * 65.43005 * 19 18 17 43 43 H 1.09002 * 110.51371 * 98.54272 * 25 23 21 44 44 H 1.08994 * 110.51108 * 335.96920 * 25 23 21 45 45 H 1.09000 * 110.51039 * 118.57850 * 26 25 23 46 46 H 1.08999 * 110.50726 * 241.28208 * 26 25 23 47 47 H 1.08998 * 110.37372 * 142.81215 * 27 26 25 48 48 H 1.09003 * 110.36949 * 265.14479 * 27 26 25 49 49 H 1.08995 * 109.58421 * 66.42977 * 29 20 19 50 50 H 1.08997 * 109.58564 * 186.71917 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0054 1.4452 -2.1412 6 7 2.0180 3.3201 -1.5233 7 6 1.6923 3.9346 -2.7048 8 1 1.1300 3.3988 -3.4551 9 6 2.0856 5.2470 -2.9369 10 7 1.7730 5.8362 -4.0691 11 14 3.0576 6.1741 -1.6387 12 1 4.5103 5.9612 -1.8622 13 1 2.7498 7.6238 -1.7313 14 1 2.6857 5.6742 -0.2908 15 6 1.9954 -0.7660 1.1376 16 1 1.7061 -0.2798 2.0693 17 6 3.5218 -0.8302 1.0476 18 6 4.0736 -1.6000 2.2498 19 6 3.5274 -3.0265 2.2324 20 7 2.0604 -2.9765 2.1690 21 6 1.3110 -3.6372 3.0737 22 8 0.1009 -3.5839 3.0137 23 6 1.9768 -4.4421 4.1599 24 1 2.6449 -3.8107 4.7458 25 6 2.7556 -5.6284 3.5496 26 6 2.5455 -6.7788 4.5595 27 6 1.6653 -6.1528 5.6638 28 8 0.9855 -5.0555 5.0162 29 6 1.4257 -2.1876 1.1042 30 1 -0.3633 0.4512 0.9233 31 1 -0.3633 0.5739 -0.8524 32 1 -0.3633 -1.0253 -0.0709 33 1 1.5611 1.9273 0.8309 34 1 3.0798 1.3444 0.1083 35 1 2.5234 3.8013 -0.8496 36 1 2.0473 6.7525 -4.2309 37 1 3.8103 -1.3386 0.1275 38 1 3.9284 0.1811 1.0462 39 1 5.1620 -1.6252 2.1973 40 1 3.7646 -1.1059 3.1710 41 1 3.8364 -3.5457 3.1397 42 1 3.9132 -3.5519 1.3588 43 1 3.8146 -5.3856 3.4621 44 1 2.3442 -5.8949 2.5761 45 1 2.0281 -7.6131 4.0858 46 1 3.5007 -7.1047 4.9712 47 1 0.9436 -6.8816 6.0326 48 1 2.2860 -5.7853 6.4810 49 1 1.6367 -2.6432 0.1368 50 1 0.3483 -2.1556 1.2660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690800498.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:54 Heat of formation + Delta-G solvation = -118.258481 kcal Electronic energy + Delta-G solvation = -30428.297732 eV Core-core repulsion = 26262.092968 eV Total energy + Delta-G solvation = -4166.204764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.79460 -40.68172 -39.83071 -38.77179 -37.05137 -35.89816 -33.75655 -33.70208 -33.02665 -31.88951 -30.24388 -29.56744 -27.23493 -26.25827 -25.46710 -24.24230 -22.98138 -22.34340 -21.53242 -21.15454 -20.27920 -20.13097 -18.62291 -17.91475 -17.57493 -17.31762 -16.87893 -16.59493 -16.35326 -16.16981 -15.81586 -15.60750 -15.45677 -15.41011 -15.13561 -14.80571 -14.72386 -14.48417 -14.30484 -14.08799 -14.00655 -13.81181 -13.50635 -13.11249 -12.89167 -12.82300 -12.69731 -12.56824 -12.41265 -12.36255 -12.25480 -11.98019 -11.87977 -11.76920 -11.57581 -11.46670 -11.41540 -11.06913 -10.65807 -10.37643 -10.22950 -9.76253 -9.30692 -8.40379 -6.01117 1.30356 1.35879 1.42468 1.44814 1.63755 1.95771 2.23600 2.58731 2.96576 3.13909 3.20483 3.29666 3.59412 3.71062 3.82294 3.84922 3.97678 4.05424 4.07054 4.11239 4.20853 4.23981 4.31071 4.33316 4.37051 4.50673 4.51731 4.54085 4.64529 4.67419 4.76356 4.78987 4.81437 4.94510 4.98942 5.01954 5.07493 5.11190 5.14234 5.16035 5.33588 5.44101 5.53607 5.75293 5.85568 5.97679 6.12000 6.30306 6.60459 6.89350 7.03598 7.40432 7.97961 8.77244 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029340 B = 0.002119 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.090191 B =13211.941125 C =13599.102220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.527 5.527 3 C 0.053 3.947 4 C 0.452 3.548 5 O -0.604 6.604 6 N -0.591 5.591 7 C -0.326 4.326 8 H 0.055 0.945 9 C -0.017 4.017 10 N -0.935 5.935 11 Si 0.965 3.035 12 H -0.254 1.254 13 H -0.277 1.277 14 H -0.233 1.233 15 C 0.078 3.922 16 H 0.041 0.959 17 C -0.119 4.119 18 C -0.126 4.126 19 C 0.093 3.907 20 N -0.600 5.600 21 C 0.511 3.489 22 O -0.582 6.582 23 C 0.060 3.940 24 H 0.125 0.875 25 C -0.142 4.142 26 C -0.149 4.149 27 C 0.032 3.968 28 O -0.391 6.391 29 C 0.123 3.877 30 H 0.025 0.975 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.389 0.611 36 H 0.279 0.721 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.126 0.874 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.112 0.888 47 H 0.097 0.903 48 H 0.084 0.916 49 H 0.077 0.923 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.638 -22.566 25.098 36.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.252 5.252 3 C -0.078 4.078 4 C 0.240 3.760 5 O -0.488 6.488 6 N -0.233 5.233 7 C -0.455 4.455 8 H 0.073 0.927 9 C -0.215 4.215 10 N -0.576 5.576 11 Si 0.785 3.215 12 H -0.178 1.178 13 H -0.202 1.202 14 H -0.156 1.156 15 C -0.030 4.030 16 H 0.059 0.941 17 C -0.157 4.157 18 C -0.165 4.165 19 C -0.027 4.027 20 N -0.334 5.334 21 C 0.300 3.700 22 O -0.461 6.461 23 C -0.001 4.001 24 H 0.142 0.858 25 C -0.180 4.180 26 C -0.186 4.186 27 C -0.044 4.044 28 O -0.311 6.311 29 C -0.001 4.001 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.146 0.854 35 H 0.225 0.775 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.087 0.913 41 H 0.134 0.866 42 H 0.108 0.892 43 H 0.144 0.856 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.130 0.870 47 H 0.115 0.885 48 H 0.102 0.898 49 H 0.095 0.905 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.507 -22.961 23.965 35.468 hybrid contribution -0.589 1.449 0.349 1.603 sum 11.918 -21.513 24.314 34.583 Atomic orbital electron populations 1.22430 0.87421 1.02244 1.00252 1.61536 1.08173 1.12540 1.42972 1.21893 1.03297 0.89143 0.93474 1.20813 0.82986 0.81828 0.90369 1.90524 1.44072 1.65162 1.49067 1.42015 1.51898 1.12504 1.16928 1.18986 1.34791 0.97083 0.94678 0.92713 1.26128 0.98726 0.96970 0.99694 1.69808 1.47225 1.14354 1.26172 0.85362 0.79175 0.78047 0.78916 1.17789 1.20185 1.15625 1.21987 0.97227 0.92920 0.90904 0.94112 1.21734 0.91646 1.02218 1.00071 1.21867 1.02546 0.94377 0.97692 1.22250 0.76554 0.98745 1.05191 1.48083 1.08490 1.48229 1.28569 1.20991 0.86900 0.79486 0.82671 1.90705 1.16615 1.63980 1.74798 1.23068 0.90040 0.96349 0.90634 0.85806 1.23082 1.02399 0.92941 0.99535 1.22971 1.02012 0.97967 0.95683 1.23766 0.96549 0.88181 0.95872 1.89287 1.34988 1.47156 1.59622 1.21447 0.97715 0.90416 0.90473 0.95613 0.92225 0.91034 0.91067 0.85378 0.77546 0.91186 0.90836 0.90423 0.86883 0.91260 0.86589 0.89160 0.85573 0.91614 0.90855 0.86998 0.88485 0.89804 0.90482 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.84 8.75 127.69 1.12 1.96 16 2 N -0.53 -16.48 4.37 -901.14 -3.94 -20.41 16 3 C 0.05 1.66 5.27 85.56 0.45 2.11 16 4 C 0.45 20.59 7.47 87.66 0.66 21.25 16 5 O -0.60 -33.68 13.91 -3.08 -0.04 -33.73 16 6 N -0.59 -27.95 5.09 -306.98 -1.56 -29.51 16 7 C -0.33 -19.17 10.16 84.04 0.85 -18.32 16 8 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 9 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 10 N -0.93 -56.59 13.96 21.66 0.30 -56.29 16 11 Si 0.97 38.62 27.74 68.60 1.90 40.53 16 12 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 13 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 14 H -0.23 -7.85 6.52 99.48 0.65 -7.21 16 15 C 0.08 1.81 2.09 44.99 0.09 1.90 16 16 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 17 C -0.12 -1.92 5.01 30.62 0.15 -1.76 16 18 C -0.13 -1.08 6.07 30.53 0.19 -0.90 16 19 C 0.09 0.79 5.69 86.22 0.49 1.28 16 20 N -0.60 -11.14 2.98 -819.75 -2.44 -13.58 16 21 C 0.51 12.08 7.02 87.66 0.62 12.69 16 22 O -0.58 -20.62 15.97 15.25 0.24 -20.38 16 23 C 0.06 0.90 2.77 30.35 0.08 0.99 16 24 H 0.12 1.09 7.57 -2.38 -0.02 1.07 16 25 C -0.14 -1.14 5.54 31.61 0.18 -0.97 16 26 C -0.15 -0.95 7.09 31.61 0.22 -0.73 16 27 C 0.03 0.34 7.64 72.48 0.55 0.89 16 28 O -0.39 -8.38 10.93 -130.71 -1.43 -9.81 16 29 C 0.12 2.97 5.15 86.36 0.45 3.41 16 30 H 0.03 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.06 2.51 5.82 -2.39 -0.01 2.50 16 32 H 0.07 2.30 6.37 -2.38 -0.02 2.28 16 33 H 0.07 1.96 8.12 -2.39 -0.02 1.95 16 34 H 0.13 3.16 5.81 -2.39 -0.01 3.15 16 35 H 0.39 15.14 5.76 -92.71 -0.53 14.60 16 36 H 0.28 15.40 8.31 -92.70 -0.77 14.63 16 37 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.08 1.19 6.14 -2.39 -0.01 1.17 16 39 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.12 0.28 4.49 -2.39 -0.01 0.27 16 42 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.13 0.05 6.86 -2.39 -0.02 0.04 16 44 H 0.07 0.77 7.86 -2.39 -0.02 0.75 16 45 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 46 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 47 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.07 2.01 5.56 -2.39 -0.01 1.99 16 Total: -1.00 -89.46 382.50 -0.03 -89.49 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.37 Total: 30.34 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: 6.56 Total: 23.35 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -7.64 Total: -119.79 kcal Atomic # 8 Polarization: -62.69 SS G_CDS: -1.23 Total: -63.91 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.90 Total: 40.53 kcal Total: -89.46 -0.03 -89.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690800498.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.765 kcal (2) G-P(sol) polarization free energy of solvation -89.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds