Wall clock time and date at job start Sat Apr 11 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34424 * 124.35209 * 2 1 4 4 O 1.21280 * 124.94099 * 359.55330 * 3 2 1 5 5 C 1.51282 * 110.11849 * 179.59138 * 3 2 1 6 6 C 1.54624 * 104.19456 * 343.74782 * 5 3 2 7 7 C 1.46761 * 124.35037 * 179.97438 * 2 1 3 8 8 H 1.08996 * 110.32121 * 77.97920 * 7 2 1 9 9 C 1.50699 * 110.24646 * 316.01668 * 7 2 1 10 10 O 1.21284 * 119.99693 * 343.94894 * 9 7 2 11 11 N 1.34776 * 120.00020 * 163.95059 * 9 7 2 12 12 C 1.46925 * 120.63195 * 359.72161 * 11 9 7 13 13 C 1.53186 * 108.77453 * 233.88373 * 12 11 9 14 14 C 1.53041 * 109.31416 * 305.36426 * 13 12 11 15 15 C 1.53036 * 109.53819 * 61.36835 * 14 13 12 16 16 H 1.08994 * 109.52772 * 58.60326 * 15 14 13 17 17 N 1.46504 * 109.50007 * 178.68526 * 15 14 13 18 18 C 1.36939 * 119.99772 * 59.83636 * 17 15 14 19 19 H 1.08005 * 119.99902 * 323.08134 * 18 17 15 20 20 C 1.38808 * 119.99764 * 143.08629 * 18 17 15 21 21 N 1.31628 * 119.99565 * 160.30692 * 20 18 17 22 22 Si 1.86797 * 120.00493 * 340.30739 * 20 18 17 23 23 H 1.48504 * 109.47090 * 95.24152 * 22 20 18 24 24 H 1.48488 * 109.47421 * 215.24652 * 22 20 18 25 25 H 1.48501 * 109.46907 * 335.24735 * 22 20 18 26 26 C 1.46494 * 120.00160 * 239.83829 * 17 15 14 27 27 C 1.53000 * 109.47354 * 86.89677 * 26 17 15 28 28 O 1.42893 * 109.46968 * 63.65338 * 27 26 17 29 29 C 1.46924 * 120.62886 * 180.02562 * 11 9 7 30 30 H 1.08997 * 109.47482 * 270.00322 * 1 2 3 31 31 H 1.09007 * 109.47117 * 29.99939 * 1 2 3 32 32 H 1.08998 * 109.47246 * 149.99993 * 1 2 3 33 33 H 1.08997 * 110.48373 * 225.06610 * 5 3 2 34 34 H 1.09004 * 110.48671 * 102.42220 * 5 3 2 35 35 H 1.09006 * 110.96957 * 266.68108 * 6 5 3 36 36 H 1.09005 * 111.00255 * 142.93223 * 6 5 3 37 37 H 1.09001 * 109.58719 * 353.67072 * 12 11 9 38 38 H 1.08997 * 109.58422 * 114.09446 * 12 11 9 39 39 H 1.09004 * 109.49820 * 185.41190 * 13 12 11 40 40 H 1.09004 * 109.49951 * 65.31453 * 13 12 11 41 41 H 1.09002 * 109.46193 * 301.34291 * 14 13 12 42 42 H 1.09000 * 109.45019 * 181.37801 * 14 13 12 43 43 H 0.97006 * 119.99423 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.47294 * 206.90314 * 26 17 15 45 45 H 1.09001 * 109.46947 * 326.89556 * 26 17 15 46 46 H 1.08997 * 109.46845 * 183.65688 * 27 26 17 47 47 H 1.09006 * 109.47066 * 303.65277 * 27 26 17 48 48 H 0.96700 * 114.00201 * 179.97438 * 28 27 26 49 49 H 1.09001 * 109.58500 * 245.90738 * 29 11 9 50 50 H 1.08998 * 109.58809 * 6.32577 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7946 2.2442 -0.0078 5 6 3.6898 0.7378 0.0101 6 6 3.7010 -0.7486 0.4357 7 6 2.2930 -1.2117 0.0005 8 1 2.3308 -1.6447 -0.9990 9 6 1.7473 -2.2158 0.9829 10 8 0.9524 -1.8658 1.8293 11 7 2.1427 -3.5028 0.9207 12 6 3.1004 -3.9431 -0.1028 13 6 2.4964 -5.1252 -0.8672 14 6 2.0919 -6.2169 0.1263 15 6 1.0321 -5.6693 1.0849 16 1 0.1665 -5.3302 0.5159 17 7 0.6227 -6.7242 2.0155 18 6 1.5480 -7.3071 2.8396 19 1 2.5516 -7.4866 2.4831 20 6 1.1961 -7.6674 4.1331 21 7 1.9171 -8.5519 4.7891 22 14 -0.3006 -6.8970 4.9429 23 1 -1.4754 -7.7869 4.7599 24 1 -0.0395 -6.7138 6.3931 25 1 -0.5769 -5.5780 4.3191 26 6 -0.7765 -7.1554 2.0644 27 6 -1.0106 -8.2474 1.0187 28 8 -0.2219 -9.3941 1.3428 29 6 1.6192 -4.4934 1.8711 30 1 -0.3634 0.0001 1.0276 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 4.2325 1.3460 0.7337 34 1 4.1194 0.8529 -0.9850 35 1 3.8268 -0.8447 1.5142 36 1 4.4754 -1.3015 -0.0961 37 1 3.2989 -3.1240 -0.7940 38 1 4.0294 -4.2535 0.3755 39 1 3.2340 -5.5229 -1.5643 40 1 1.6173 -4.7911 -1.4183 41 1 2.9668 -6.5332 0.6943 42 1 1.6842 -7.0692 -0.4172 43 1 1.6714 -8.8034 5.6932 44 1 -1.0013 -7.5478 3.0562 45 1 -1.4261 -6.3057 1.8541 46 1 -2.0653 -8.5223 1.0103 47 1 -0.7242 -7.8757 0.0348 48 1 -0.3208 -10.1280 0.7210 49 1 2.4272 -4.8488 2.5107 50 1 0.8403 -4.0374 2.4823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692040552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:16 Heat of formation + Delta-G solvation = -72.129881 kcal Electronic energy + Delta-G solvation = -31784.310600 eV Core-core repulsion = 27620.106123 eV Total energy + Delta-G solvation = -4164.204477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.15815 -39.53538 -37.79601 -36.48438 -36.21909 -34.83305 -33.08842 -32.26262 -31.51726 -30.38988 -28.62418 -27.44289 -26.78700 -25.09788 -24.10472 -22.67319 -22.63453 -21.17357 -20.29175 -19.54976 -18.85156 -17.79618 -16.90691 -16.76290 -16.51270 -16.04315 -15.97642 -15.42151 -15.18985 -14.62739 -14.54129 -14.16958 -14.09871 -13.81555 -13.69936 -13.56232 -13.40757 -13.11744 -12.89773 -12.69232 -12.64995 -12.56605 -12.30574 -12.18956 -12.06805 -11.80051 -11.57472 -11.45391 -11.16413 -10.87860 -10.67549 -10.55685 -10.41320 -10.12839 -10.07101 -9.88264 -9.69268 -9.59963 -9.19899 -8.80152 -8.46737 -8.44592 -6.86385 -5.91129 -3.34522 2.34353 2.50020 2.73058 3.12312 3.33843 3.50614 3.52847 3.99124 4.06706 4.31846 4.51021 4.56537 4.65657 4.71144 4.95958 5.01328 5.04591 5.08081 5.15323 5.22690 5.31310 5.41370 5.46152 5.46811 5.53650 5.59367 5.63098 5.74815 5.81226 5.83206 5.86030 5.94593 6.05594 6.06971 6.15778 6.20437 6.28654 6.39115 6.47326 6.60256 6.66812 6.82536 6.89315 6.91358 7.49885 7.94651 8.06132 8.19694 8.37936 8.44844 8.97448 9.76632 10.10973 11.24481 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.003296 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.956457 B = 8494.056541 C = 8852.065819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.600 5.600 3 C 0.518 3.482 4 O -0.533 6.533 5 C -0.152 4.152 6 C -0.121 4.121 7 C 0.112 3.888 8 H 0.104 0.896 9 C 0.503 3.497 10 O -0.531 6.531 11 N -0.600 5.600 12 C 0.104 3.896 13 C -0.133 4.133 14 C -0.126 4.126 15 C 0.171 3.829 16 H 0.051 0.949 17 N -0.590 5.590 18 C -0.251 4.251 19 H 0.079 0.921 20 C 0.043 3.957 21 N -0.900 5.900 22 Si 0.874 3.126 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.270 1.270 26 C 0.132 3.868 27 C 0.063 3.937 28 O -0.535 6.535 29 C 0.101 3.899 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.261 0.739 44 H 0.064 0.936 45 H 0.051 0.949 46 H 0.023 0.977 47 H 0.031 0.969 48 H 0.353 0.647 49 H 0.084 0.916 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.694 10.195 -15.621 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.333 5.333 3 C 0.306 3.694 4 O -0.410 6.410 5 C -0.192 4.192 6 C -0.159 4.159 7 C 0.004 3.996 8 H 0.122 0.878 9 C 0.288 3.712 10 O -0.407 6.407 11 N -0.333 5.333 12 C -0.019 4.019 13 C -0.172 4.172 14 C -0.165 4.165 15 C 0.063 3.937 16 H 0.069 0.931 17 N -0.311 5.311 18 C -0.380 4.380 19 H 0.096 0.904 20 C -0.157 4.157 21 N -0.541 5.541 22 Si 0.706 3.294 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.195 1.195 26 C 0.006 3.994 27 C -0.018 4.018 28 O -0.336 6.336 29 C -0.022 4.022 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.041 0.959 47 H 0.049 0.951 48 H 0.197 0.803 49 H 0.102 0.898 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.145 11.277 -14.465 18.466 hybrid contribution -1.153 -0.366 0.043 1.211 sum 0.992 10.910 -14.422 18.111 Atomic orbital electron populations 1.21557 0.77272 1.02156 1.03038 1.47869 1.06862 1.05766 1.72847 1.20838 0.89249 0.84159 0.75149 1.90723 1.78759 1.20853 1.50690 1.22358 0.94839 0.97078 1.04970 1.22624 0.94099 0.95454 1.03769 1.21726 0.91898 0.86321 0.99693 0.87809 1.20506 0.82203 0.82929 0.85561 1.90727 1.34235 1.78570 1.37154 1.48284 1.44147 1.07833 1.33082 1.21855 0.92440 0.97485 0.90133 1.21944 1.00715 0.96186 0.98315 1.21952 1.00988 0.96817 0.96749 1.20603 0.94868 0.87633 0.90640 0.93078 1.44005 1.04617 1.38376 1.44083 1.18516 0.94320 1.34052 0.91095 0.90356 1.25318 0.96756 0.97237 0.96407 1.69838 1.40902 1.30754 1.12641 0.87004 0.83648 0.80577 0.78210 1.21658 1.23197 1.19475 1.21359 0.86606 0.93420 0.98032 1.22861 0.91832 0.88613 0.98486 1.86933 1.68602 1.24911 1.53164 1.22375 1.00387 0.87907 0.91512 0.91299 0.90970 0.91444 0.87569 0.87394 0.89155 0.88023 0.90494 0.90658 0.91011 0.92171 0.90909 0.92080 0.92945 0.91838 0.93096 0.95878 0.95094 0.80344 0.89777 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.21 9.57 59.84 0.57 1.78 16 2 N -0.60 -7.20 3.01 -174.04 -0.52 -7.73 16 3 C 0.52 6.48 8.02 -10.86 -0.09 6.39 16 4 O -0.53 -8.69 17.59 5.56 0.10 -8.59 16 5 C -0.15 -1.18 6.86 -26.74 -0.18 -1.37 16 6 C -0.12 -0.90 6.33 -25.11 -0.16 -1.06 16 7 C 0.11 1.10 2.74 -68.17 -0.19 0.91 16 8 H 0.10 0.75 6.69 -51.93 -0.35 0.41 16 9 C 0.50 6.97 6.60 -10.99 -0.07 6.90 16 10 O -0.53 -9.66 14.35 5.55 0.08 -9.58 16 11 N -0.60 -8.09 2.97 -172.80 -0.51 -8.61 16 12 C 0.10 1.00 6.18 -3.71 -0.02 0.98 16 13 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 14 C -0.13 -1.90 5.11 -26.69 -0.14 -2.04 16 15 C 0.17 3.02 2.78 -67.83 -0.19 2.83 16 16 H 0.05 0.87 7.84 -51.93 -0.41 0.46 16 17 N -0.59 -12.89 2.00 -165.55 -0.33 -13.22 16 18 C -0.25 -6.56 8.23 -15.06 -0.12 -6.68 16 19 H 0.08 2.21 7.02 -52.48 -0.37 1.84 16 20 C 0.04 1.21 5.34 -17.43 -0.09 1.12 16 21 N -0.90 -27.19 13.97 55.49 0.78 -26.42 16 22 Si 0.87 22.34 24.82 -169.99 -4.22 18.12 16 23 H -0.29 -7.28 6.70 56.52 0.38 -6.90 16 24 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.13 2.76 4.73 -4.04 -0.02 2.74 16 27 C 0.06 1.13 7.40 37.16 0.27 1.40 16 28 O -0.53 -10.81 13.22 -35.23 -0.47 -11.28 16 29 C 0.10 1.80 5.76 -3.73 -0.02 1.78 16 30 H 0.07 0.96 7.46 -51.93 -0.39 0.57 16 31 H 0.07 0.81 7.92 -51.92 -0.41 0.40 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.80 7.90 -51.93 -0.41 0.39 16 36 H 0.10 0.44 7.84 -51.93 -0.41 0.03 16 37 H 0.08 0.48 5.14 -51.93 -0.27 0.22 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.25 7.04 -51.93 -0.37 0.89 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.06 1.52 3.12 -51.93 -0.16 1.36 16 45 H 0.05 0.95 7.99 -51.93 -0.41 0.54 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.35 5.13 9.12 45.56 0.42 5.55 16 49 H 0.08 1.66 7.50 -51.93 -0.39 1.27 16 50 H 0.08 1.74 7.00 -51.93 -0.36 1.38 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -36.49 385.75 -7.15 -43.64 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.25 Total: 3.71 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: -0.61 Total: 14.14 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.59 Total: -55.97 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.29 Total: -29.45 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.22 Total: 18.12 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.49 -7.15 -43.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692040552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.494 kcal (2) G-P(sol) polarization free energy of solvation -36.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds