Wall clock time and date at job start Sat Apr 11 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34424 * 124.35209 * 2 1 4 4 O 1.21280 * 124.94099 * 359.55330 * 3 2 1 5 5 C 1.51282 * 110.11849 * 179.59138 * 3 2 1 6 6 C 1.54624 * 104.19456 * 343.74782 * 5 3 2 7 7 C 1.46761 * 124.35037 * 179.97438 * 2 1 3 8 8 H 1.08996 * 110.32121 * 77.97920 * 7 2 1 9 9 C 1.50699 * 110.24646 * 316.01668 * 7 2 1 10 10 O 1.21284 * 119.99693 * 343.94894 * 9 7 2 11 11 N 1.34776 * 120.00020 * 163.95059 * 9 7 2 12 12 C 1.46925 * 120.63195 * 359.72161 * 11 9 7 13 13 C 1.53186 * 108.77453 * 233.88373 * 12 11 9 14 14 C 1.53041 * 109.31416 * 305.36426 * 13 12 11 15 15 C 1.53036 * 109.53819 * 61.36835 * 14 13 12 16 16 H 1.08994 * 109.52772 * 58.60326 * 15 14 13 17 17 N 1.46504 * 109.50007 * 178.68526 * 15 14 13 18 18 C 1.36939 * 119.99772 * 59.83636 * 17 15 14 19 19 H 1.08005 * 119.99902 * 323.08134 * 18 17 15 20 20 C 1.38808 * 119.99764 * 143.08629 * 18 17 15 21 21 N 1.31628 * 119.99565 * 160.30692 * 20 18 17 22 22 Si 1.86797 * 120.00493 * 340.30739 * 20 18 17 23 23 H 1.48504 * 109.47090 * 95.24152 * 22 20 18 24 24 H 1.48488 * 109.47421 * 215.24652 * 22 20 18 25 25 H 1.48501 * 109.46907 * 335.24735 * 22 20 18 26 26 C 1.46494 * 120.00160 * 239.83829 * 17 15 14 27 27 C 1.53000 * 109.47354 * 86.89677 * 26 17 15 28 28 O 1.42893 * 109.46968 * 63.65338 * 27 26 17 29 29 C 1.46924 * 120.62886 * 180.02562 * 11 9 7 30 30 H 1.08997 * 109.47482 * 270.00322 * 1 2 3 31 31 H 1.09007 * 109.47117 * 29.99939 * 1 2 3 32 32 H 1.08998 * 109.47246 * 149.99993 * 1 2 3 33 33 H 1.08997 * 110.48373 * 225.06610 * 5 3 2 34 34 H 1.09004 * 110.48671 * 102.42220 * 5 3 2 35 35 H 1.09006 * 110.96957 * 266.68108 * 6 5 3 36 36 H 1.09005 * 111.00255 * 142.93223 * 6 5 3 37 37 H 1.09001 * 109.58719 * 353.67072 * 12 11 9 38 38 H 1.08997 * 109.58422 * 114.09446 * 12 11 9 39 39 H 1.09004 * 109.49820 * 185.41190 * 13 12 11 40 40 H 1.09004 * 109.49951 * 65.31453 * 13 12 11 41 41 H 1.09002 * 109.46193 * 301.34291 * 14 13 12 42 42 H 1.09000 * 109.45019 * 181.37801 * 14 13 12 43 43 H 0.97006 * 119.99423 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.47294 * 206.90314 * 26 17 15 45 45 H 1.09001 * 109.46947 * 326.89556 * 26 17 15 46 46 H 1.08997 * 109.46845 * 183.65688 * 27 26 17 47 47 H 1.09006 * 109.47066 * 303.65277 * 27 26 17 48 48 H 0.96700 * 114.00201 * 179.97438 * 28 27 26 49 49 H 1.09001 * 109.58500 * 245.90738 * 29 11 9 50 50 H 1.08998 * 109.58809 * 6.32577 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7946 2.2442 -0.0078 5 6 3.6898 0.7378 0.0101 6 6 3.7010 -0.7486 0.4357 7 6 2.2930 -1.2117 0.0005 8 1 2.3308 -1.6447 -0.9990 9 6 1.7473 -2.2158 0.9829 10 8 0.9524 -1.8658 1.8293 11 7 2.1427 -3.5028 0.9207 12 6 3.1004 -3.9431 -0.1028 13 6 2.4964 -5.1252 -0.8672 14 6 2.0919 -6.2169 0.1263 15 6 1.0321 -5.6693 1.0849 16 1 0.1665 -5.3302 0.5159 17 7 0.6227 -6.7242 2.0155 18 6 1.5480 -7.3071 2.8396 19 1 2.5516 -7.4866 2.4831 20 6 1.1961 -7.6674 4.1331 21 7 1.9171 -8.5519 4.7891 22 14 -0.3006 -6.8970 4.9429 23 1 -1.4754 -7.7869 4.7599 24 1 -0.0395 -6.7138 6.3931 25 1 -0.5769 -5.5780 4.3191 26 6 -0.7765 -7.1554 2.0644 27 6 -1.0106 -8.2474 1.0187 28 8 -0.2219 -9.3941 1.3428 29 6 1.6192 -4.4934 1.8711 30 1 -0.3634 0.0001 1.0276 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 4.2325 1.3460 0.7337 34 1 4.1194 0.8529 -0.9850 35 1 3.8268 -0.8447 1.5142 36 1 4.4754 -1.3015 -0.0961 37 1 3.2989 -3.1240 -0.7940 38 1 4.0294 -4.2535 0.3755 39 1 3.2340 -5.5229 -1.5643 40 1 1.6173 -4.7911 -1.4183 41 1 2.9668 -6.5332 0.6943 42 1 1.6842 -7.0692 -0.4172 43 1 1.6714 -8.8034 5.6932 44 1 -1.0013 -7.5478 3.0562 45 1 -1.4261 -6.3057 1.8541 46 1 -2.0653 -8.5223 1.0103 47 1 -0.7242 -7.8757 0.0348 48 1 -0.3208 -10.1280 0.7210 49 1 2.4272 -4.8488 2.5107 50 1 0.8403 -4.0374 2.4823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692040552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:15 Heat of formation + Delta-G solvation = -101.886474 kcal Electronic energy + Delta-G solvation = -31785.600943 eV Core-core repulsion = 27620.106123 eV Total energy + Delta-G solvation = -4165.494820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.10143 -40.63396 -39.17129 -37.83220 -37.26120 -36.36649 -34.10508 -33.64344 -33.07048 -31.70046 -29.78109 -28.91893 -27.65931 -26.20594 -25.81834 -23.98609 -23.43698 -22.48100 -21.60079 -20.74474 -19.85260 -18.72440 -18.42589 -18.27626 -17.72307 -17.33203 -17.07606 -16.96399 -16.38090 -15.97155 -15.66115 -15.46131 -15.17287 -15.07302 -14.84718 -14.72108 -14.60217 -14.47140 -14.15964 -14.03814 -13.87058 -13.62696 -13.49278 -13.33824 -13.16502 -13.06426 -12.92281 -12.79327 -12.48180 -12.11061 -12.06285 -11.92227 -11.73645 -11.67238 -11.50491 -11.30230 -11.09241 -10.90623 -10.71336 -10.50188 -9.78336 -9.64748 -8.70445 -8.09085 -5.45063 1.25429 1.38273 1.40289 1.44794 1.48964 1.79856 2.12810 2.45184 3.09942 3.21790 3.30682 3.35993 3.58279 3.69709 3.88101 3.99724 4.08563 4.11087 4.19648 4.26212 4.28778 4.38119 4.38651 4.46323 4.50998 4.58406 4.63862 4.64751 4.75991 4.80629 4.83273 4.85309 4.90699 4.98103 5.01741 5.03696 5.04962 5.11906 5.25514 5.32445 5.45266 5.50984 5.63921 6.00864 6.02790 6.28475 6.45526 7.00647 7.03557 7.14262 7.19898 7.72077 8.11148 9.11093 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.003296 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.956457 B = 8494.056541 C = 8852.065819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.607 5.607 3 C 0.504 3.496 4 O -0.583 6.583 5 C -0.139 4.139 6 C -0.115 4.115 7 C 0.116 3.884 8 H 0.150 0.850 9 C 0.499 3.501 10 O -0.584 6.584 11 N -0.596 5.596 12 C 0.097 3.903 13 C -0.123 4.123 14 C -0.118 4.118 15 C 0.169 3.831 16 H 0.067 0.933 17 N -0.602 5.602 18 C -0.209 4.209 19 H 0.051 0.949 20 C -0.015 4.015 21 N -0.951 5.951 22 Si 0.927 3.073 23 H -0.284 1.284 24 H -0.319 1.319 25 H -0.267 1.267 26 C 0.118 3.882 27 C 0.068 3.932 28 O -0.574 6.574 29 C 0.114 3.886 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.145 0.855 35 H 0.070 0.930 36 H 0.150 0.850 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.054 0.946 43 H 0.255 0.745 44 H 0.032 0.968 45 H 0.074 0.926 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.377 0.623 49 H 0.054 0.946 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.727 11.151 -19.902 23.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.340 5.340 3 C 0.294 3.706 4 O -0.464 6.464 5 C -0.179 4.179 6 C -0.153 4.153 7 C 0.010 3.990 8 H 0.167 0.833 9 C 0.287 3.713 10 O -0.464 6.464 11 N -0.328 5.328 12 C -0.024 4.024 13 C -0.161 4.161 14 C -0.157 4.157 15 C 0.062 3.938 16 H 0.085 0.915 17 N -0.325 5.325 18 C -0.339 4.339 19 H 0.068 0.932 20 C -0.210 4.210 21 N -0.597 5.597 22 Si 0.760 3.240 23 H -0.212 1.212 24 H -0.249 1.249 25 H -0.192 1.192 26 C -0.007 4.007 27 C -0.012 4.012 28 O -0.379 6.379 29 C -0.010 4.010 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.130 0.870 34 H 0.163 0.837 35 H 0.089 0.911 36 H 0.168 0.832 37 H 0.146 0.854 38 H 0.099 0.901 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.224 0.776 49 H 0.072 0.928 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.179 12.222 -18.827 22.670 hybrid contribution -1.485 -0.654 1.282 2.068 sum 1.694 11.568 -17.545 21.084 Atomic orbital electron populations 1.21469 0.78129 1.02987 1.01389 1.48097 1.06894 1.06761 1.72199 1.21778 0.91434 0.83449 0.73920 1.90692 1.80033 1.22755 1.52870 1.22417 0.91090 0.97065 1.07283 1.22776 0.93500 0.95608 1.03374 1.22024 0.92361 0.84374 1.00284 0.83330 1.21329 0.81224 0.83280 0.85501 1.90721 1.36719 1.79427 1.39517 1.48278 1.44540 1.07063 1.32947 1.22254 0.91332 0.99038 0.89765 1.21915 1.02289 0.94552 0.97361 1.21809 0.98638 0.98443 0.96810 1.20816 0.96331 0.86481 0.90128 0.91519 1.44154 1.04465 1.39701 1.44133 1.18362 0.93804 1.30962 0.90804 0.93153 1.25788 0.99151 0.98587 0.97457 1.69950 1.43319 1.33546 1.12906 0.86128 0.81562 0.79935 0.76412 1.21228 1.24851 1.19193 1.21498 0.86173 0.95458 0.97603 1.22762 0.93241 0.87155 0.97994 1.86853 1.69528 1.26500 1.55006 1.21847 0.98338 0.88878 0.91982 0.94259 0.90754 0.89937 0.86980 0.83725 0.91077 0.83178 0.85419 0.90108 0.87826 0.90693 0.93710 0.92696 0.93584 0.94996 0.90812 0.92944 0.92809 0.77590 0.92800 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.40 9.57 127.77 1.22 3.62 16 2 N -0.61 -13.29 3.01 -823.12 -2.48 -15.77 16 3 C 0.50 11.62 8.02 87.90 0.71 12.33 16 4 O -0.58 -18.80 17.59 -3.03 -0.05 -18.85 16 5 C -0.14 -1.56 6.86 30.59 0.21 -1.35 16 6 C -0.11 -1.13 6.33 31.65 0.20 -0.93 16 7 C 0.12 1.80 2.74 44.70 0.12 1.92 16 8 H 0.15 1.06 6.69 -2.39 -0.02 1.05 16 9 C 0.50 12.81 6.60 87.66 0.58 13.39 16 10 O -0.58 -21.50 14.35 -3.04 -0.04 -21.55 16 11 N -0.60 -14.65 2.97 -818.99 -2.43 -17.08 16 12 C 0.10 1.37 6.18 86.36 0.53 1.90 16 13 C -0.12 -1.93 6.08 30.67 0.19 -1.75 16 14 C -0.12 -3.30 5.11 30.62 0.16 -3.15 16 15 C 0.17 5.80 2.78 45.06 0.13 5.92 16 16 H 0.07 2.10 7.84 -2.39 -0.02 2.08 16 17 N -0.60 -26.31 2.00 -677.68 -1.36 -27.67 16 18 C -0.21 -11.24 8.23 84.03 0.69 -10.55 16 19 H 0.05 2.97 7.02 -2.91 -0.02 2.95 16 20 C -0.01 -0.86 5.34 84.86 0.45 -0.41 16 21 N -0.95 -60.17 13.97 21.65 0.30 -59.86 16 22 Si 0.93 48.33 24.82 68.60 1.70 50.03 16 23 H -0.28 -14.40 6.70 99.48 0.67 -13.73 16 24 H -0.32 -17.17 7.11 99.48 0.71 -16.46 16 25 H -0.27 -13.51 7.11 99.48 0.71 -12.80 16 26 C 0.12 4.81 4.73 86.38 0.41 5.22 16 27 C 0.07 2.29 7.40 71.98 0.53 2.82 16 28 O -0.57 -22.56 13.22 -148.98 -1.97 -24.53 16 29 C 0.11 4.09 5.76 86.35 0.50 4.59 16 30 H 0.04 1.14 7.46 -2.39 -0.02 1.12 16 31 H 0.07 1.66 7.92 -2.38 -0.02 1.64 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 1.04 7.90 -2.38 -0.02 1.02 16 36 H 0.15 0.11 7.84 -2.38 -0.02 0.09 16 37 H 0.13 0.58 5.14 -2.39 -0.01 0.56 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.04 1.51 7.04 -2.39 -0.02 1.49 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 44 H 0.03 1.52 3.12 -2.39 -0.01 1.52 16 45 H 0.07 2.63 7.99 -2.39 -0.02 2.61 16 46 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 48 H 0.38 10.35 9.12 -74.06 -0.68 9.67 16 49 H 0.05 2.22 7.50 -2.39 -0.02 2.20 16 50 H 0.05 2.06 7.00 -2.39 -0.02 2.04 16 Total: -1.00 -89.09 385.75 0.53 -88.56 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.24 Total: 13.14 kcal Atomic # 6 Polarization: 26.97 SS G_CDS: 6.62 Total: 33.59 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -5.97 Total: -120.38 kcal Atomic # 8 Polarization: -62.87 SS G_CDS: -2.07 Total: -64.93 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.70 Total: 50.03 kcal Total: -89.09 0.53 -88.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692040552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.331 kcal (2) G-P(sol) polarization free energy of solvation -89.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds