Wall clock time and date at job start Sat Apr 11 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34780 * 120.00208 * 2 1 4 4 O 1.21277 * 119.99847 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.99801 * 0.02562 * 3 2 1 6 6 C 1.53010 * 109.46980 * 179.97438 * 5 3 2 7 7 H 1.08993 * 109.86570 * 53.99195 * 6 5 3 8 8 C 1.54103 * 109.87657 * 175.00079 * 6 5 3 9 9 C 1.54805 * 104.18385 * 121.45486 * 8 6 5 10 10 C 1.54992 * 102.09803 * 20.87876 * 9 8 6 11 11 O 1.43744 * 109.87729 * 292.83158 * 6 5 3 12 12 C 1.46498 * 119.99770 * 180.02562 * 2 1 3 13 13 H 1.09001 * 110.90543 * 177.58595 * 12 2 1 14 14 C 1.55138 * 110.99026 * 301.45396 * 12 2 1 15 15 C 1.54321 * 103.02061 * 153.74577 * 14 12 2 16 16 N 1.47443 * 107.23033 * 337.71865 * 15 14 12 17 17 C 1.46909 * 110.99446 * 236.74081 * 16 15 14 18 18 C 1.50703 * 109.46840 * 176.64685 * 17 16 15 19 19 O 1.21293 * 120.00171 * 6.13334 * 18 17 16 20 20 N 1.34775 * 120.00186 * 186.12614 * 18 17 16 21 21 C 1.37094 * 120.00371 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99670 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00048 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00269 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00118 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47138 * 59.99426 * 25 23 21 27 27 H 1.48493 * 109.47132 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46579 * 299.99784 * 25 23 21 29 29 C 1.47845 * 108.56906 * 359.00732 * 16 15 14 30 30 H 1.08993 * 109.46932 * 270.00292 * 1 2 3 31 31 H 1.09007 * 109.46773 * 29.99976 * 1 2 3 32 32 H 1.08994 * 109.47241 * 149.99289 * 1 2 3 33 33 H 1.08994 * 109.47381 * 299.99756 * 5 3 2 34 34 H 1.08999 * 109.47117 * 60.00136 * 5 3 2 35 35 H 1.08999 * 110.48117 * 240.13015 * 8 6 5 36 36 H 1.09001 * 110.48762 * 2.77704 * 8 6 5 37 37 H 1.09001 * 110.90658 * 139.07760 * 9 8 6 38 38 H 1.09000 * 110.90554 * 262.67663 * 9 8 6 39 39 H 1.09000 * 110.62214 * 81.47363 * 10 9 8 40 40 H 1.09000 * 110.62244 * 204.31749 * 10 9 8 41 41 H 1.08991 * 110.70924 * 35.36436 * 14 12 2 42 42 H 1.08999 * 110.70792 * 272.12514 * 14 12 2 43 43 H 1.09005 * 109.88817 * 97.11725 * 15 14 12 44 44 H 1.08995 * 109.89229 * 218.14976 * 15 14 12 45 45 H 1.09000 * 109.47119 * 296.64796 * 17 16 15 46 46 H 1.09004 * 109.47025 * 56.65210 * 17 16 15 47 47 H 0.97002 * 119.99665 * 0.02562 * 20 18 17 48 48 H 0.97002 * 120.00455 * 179.97438 * 24 23 21 49 49 H 1.09000 * 110.37028 * 142.93138 * 29 16 15 50 50 H 1.09002 * 110.37264 * 265.27248 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3798 3.6352 0.0011 7 1 3.0786 3.5255 -0.8282 8 6 1.6230 4.9717 -0.1246 9 6 2.0322 5.7600 1.1433 10 6 3.3488 5.0531 1.5546 11 8 3.0961 3.6653 1.2470 12 6 2.1975 -1.2687 -0.0006 13 1 3.2730 -1.0969 -0.0434 14 6 1.8207 -2.1284 1.2346 15 6 2.0927 -3.5687 0.7518 16 7 2.0452 -3.5517 -0.7218 17 6 1.0502 -4.5068 -1.2274 18 6 0.9716 -4.4026 -2.7288 19 8 1.7510 -3.6931 -3.3291 20 7 0.0354 -5.0979 -3.4045 21 6 -0.0358 -5.0036 -4.7704 22 1 0.6581 -4.3717 -5.3048 23 6 -1.0013 -5.7200 -5.4669 24 7 -1.8459 -6.4884 -4.8165 25 14 -1.0987 -5.5908 -7.3279 26 1 0.1837 -6.0444 -7.9234 27 1 -2.2053 -6.4465 -7.8262 28 1 -1.3517 -4.1792 -7.7135 29 6 1.7338 -2.1766 -1.1669 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8901 -0.5139 32 1 -0.3633 -0.8899 -0.5139 33 1 0.7585 2.5303 -0.8891 34 1 0.7592 2.5298 0.8908 35 1 1.9360 5.5043 -1.0226 36 1 0.5465 4.8009 -0.1369 37 1 2.2111 6.8092 0.9082 38 1 1.2773 5.6610 1.9234 39 1 4.1864 5.4300 0.9677 40 1 3.5383 5.1843 2.6199 41 1 0.7686 -1.9991 1.4878 42 1 2.4561 -1.8807 2.0849 43 1 3.0780 -3.8925 1.0873 44 1 1.3287 -4.2411 1.1420 45 1 1.3434 -5.5189 -0.9483 46 1 0.0755 -4.2788 -0.7959 47 1 -0.5880 -5.6651 -2.9244 48 1 -2.5202 -6.9882 -5.3027 49 1 2.2856 -1.9381 -2.0761 50 1 0.6622 -2.0648 -1.3319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698555859.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:33 Heat of formation + Delta-G solvation = -101.359450 kcal Electronic energy + Delta-G solvation = -30095.419918 eV Core-core repulsion = 25929.947951 eV Total energy + Delta-G solvation = -4165.471967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.48947 -39.56065 -38.66905 -37.42005 -35.17574 -33.90652 -32.75084 -32.04124 -31.33466 -30.87059 -28.62723 -27.12928 -27.05249 -26.09288 -24.19152 -22.72045 -21.62218 -20.87088 -20.80201 -19.20801 -19.05845 -17.89584 -17.42105 -16.76950 -16.40641 -16.11946 -15.91976 -15.77268 -15.09470 -15.00510 -14.59648 -14.36874 -14.18729 -13.94059 -13.75395 -13.53945 -13.22514 -13.03109 -12.90622 -12.87688 -12.42102 -12.30890 -12.19805 -12.01798 -11.80283 -11.64709 -11.52430 -11.49274 -11.41152 -11.30707 -11.11865 -11.05204 -10.86316 -10.54485 -10.44590 -10.22215 -9.87986 -9.73150 -9.49343 -8.65027 -8.37825 -7.98927 -7.86807 -6.42546 -3.83316 2.63729 2.86068 3.19161 3.24930 3.29463 3.59747 3.90004 4.08378 4.18098 4.26741 4.33314 4.50129 4.60845 4.70018 4.74051 4.79754 4.90398 4.94397 5.04088 5.04426 5.16307 5.20610 5.24418 5.26955 5.33307 5.34929 5.37942 5.43207 5.45952 5.54091 5.61359 5.66221 5.70118 5.80154 5.81282 5.85767 5.94253 6.11057 6.19916 6.27337 6.47553 6.61389 6.70838 7.25973 7.29850 7.35260 7.54202 8.05210 8.18842 8.61052 9.17296 9.53340 10.05407 10.75096 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015628 B = 0.002260 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.250090 B =12386.270824 C =13535.580700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.608 5.608 3 C 0.516 3.484 4 O -0.526 6.526 5 C -0.139 4.139 6 C 0.092 3.908 7 H 0.077 0.923 8 C -0.154 4.154 9 C -0.156 4.156 10 C 0.043 3.957 11 O -0.359 6.359 12 C 0.127 3.873 13 H 0.114 0.886 14 C -0.151 4.151 15 C 0.042 3.958 16 N -0.505 5.505 17 C 0.042 3.958 18 C 0.441 3.559 19 O -0.577 6.577 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.049 3.951 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.091 0.909 46 H 0.046 0.954 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.102 0.898 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.718 19.202 15.377 24.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.341 5.341 3 C 0.304 3.696 4 O -0.402 6.402 5 C -0.179 4.179 6 C 0.034 3.966 7 H 0.095 0.905 8 C -0.192 4.192 9 C -0.193 4.193 10 C -0.034 4.034 11 O -0.278 6.278 12 C 0.023 3.977 13 H 0.132 0.868 14 C -0.190 4.190 15 C -0.086 4.086 16 N -0.230 5.230 17 C -0.090 4.090 18 C 0.226 3.774 19 O -0.461 6.461 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 C -0.079 4.079 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.109 0.891 46 H 0.064 0.936 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.120 0.880 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.274 19.207 14.804 24.356 hybrid contribution -1.680 -0.119 -0.415 1.734 sum 0.594 19.088 14.389 23.911 Atomic orbital electron populations 1.21833 0.79789 1.03781 1.01713 1.47724 1.06797 1.05764 1.73818 1.20511 0.88135 0.85036 0.75900 1.90720 1.13777 1.87047 1.48631 1.21959 0.98925 0.92205 1.04810 1.22477 0.92641 0.92992 0.88534 0.90489 1.23042 1.01514 0.95671 0.98928 1.23134 0.98362 1.00021 0.97815 1.23544 0.96392 0.82174 1.01271 1.89018 1.75998 1.24001 1.38764 1.22343 0.98459 0.82144 0.94745 0.86768 1.23097 1.01789 0.95674 0.98442 1.22838 1.01983 0.95528 0.88256 1.63321 1.47043 1.05506 1.07086 1.22133 0.93619 0.97681 0.95545 1.19757 0.84358 0.85147 0.88151 1.90516 1.43211 1.42801 1.69586 1.41857 1.29523 1.41123 1.07574 1.19641 1.15419 1.26059 0.81674 0.87995 1.25253 0.95848 0.96220 1.00620 1.69602 1.19046 1.28990 1.36737 0.85925 0.77865 0.78262 0.82215 1.19868 1.20989 1.19951 1.23336 0.99837 0.86535 0.98197 0.92585 0.90897 0.90384 0.87623 0.88264 0.90309 0.90180 0.90278 0.90536 0.92244 0.89137 0.91281 0.90594 0.90232 0.92482 0.89069 0.93641 0.77515 0.91838 0.88000 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 9.14 59.85 0.55 1.22 16 2 N -0.61 -7.70 2.91 -171.50 -0.50 -8.20 16 3 C 0.52 7.03 7.58 -10.99 -0.08 6.95 16 4 O -0.53 -9.32 14.89 -5.76 -0.09 -9.41 16 5 C -0.14 -1.30 3.74 -27.88 -0.10 -1.41 16 6 C 0.09 0.92 2.93 -26.15 -0.08 0.84 16 7 H 0.08 0.88 7.93 -51.93 -0.41 0.47 16 8 C -0.15 -1.02 6.64 -25.20 -0.17 -1.18 16 9 C -0.16 -0.95 7.15 -24.73 -0.18 -1.12 16 10 C 0.04 0.35 7.72 38.21 0.29 0.65 16 11 O -0.36 -4.37 10.58 -46.56 -0.49 -4.86 16 12 C 0.13 1.84 3.45 -65.80 -0.23 1.62 16 13 H 0.11 1.91 7.02 -51.93 -0.36 1.54 16 14 C -0.15 -1.81 6.53 -24.91 -0.16 -1.97 16 15 C 0.04 0.55 6.89 -2.83 -0.02 0.53 16 16 N -0.51 -8.66 5.07 -232.68 -1.18 -9.84 16 17 C 0.04 0.75 5.07 -4.97 -0.03 0.72 16 18 C 0.44 10.37 7.34 -10.98 -0.08 10.29 16 19 O -0.58 -15.56 13.89 5.55 0.08 -15.48 16 20 N -0.56 -14.19 5.29 -10.97 -0.06 -14.25 16 21 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 25 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 C 0.05 0.84 4.83 -2.30 -0.01 0.83 16 30 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.07 0.52 6.44 -51.93 -0.33 0.19 16 32 H 0.08 0.82 6.00 -51.93 -0.31 0.51 16 33 H 0.11 0.75 7.40 -51.93 -0.38 0.36 16 34 H 0.10 0.78 8.11 -51.93 -0.42 0.36 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.43 7.70 -51.93 -0.40 0.03 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.75 7.23 -51.93 -0.38 0.38 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.66 7.58 -51.93 -0.39 0.27 16 45 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 47 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.10 2.13 6.94 -51.93 -0.36 1.77 16 50 H 0.05 0.79 5.59 -51.93 -0.29 0.50 16 LS Contribution 393.40 15.07 5.93 5.93 Total: -1.00 -34.53 393.40 -9.25 -43.78 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -8.10 Total: 9.95 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -0.53 Total: 10.05 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -1.01 Total: -55.92 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.50 Total: -29.75 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.53 -9.25 -43.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698555859.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.584 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds