Wall clock time and date at job start Sat Apr 11 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34780 * 120.00208 * 2 1 4 4 O 1.21277 * 119.99847 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.99801 * 0.02562 * 3 2 1 6 6 C 1.53010 * 109.46980 * 179.97438 * 5 3 2 7 7 H 1.08993 * 109.86570 * 53.99195 * 6 5 3 8 8 C 1.54103 * 109.87657 * 175.00079 * 6 5 3 9 9 C 1.54805 * 104.18385 * 121.45486 * 8 6 5 10 10 C 1.54992 * 102.09803 * 20.87876 * 9 8 6 11 11 O 1.43744 * 109.87729 * 292.83158 * 6 5 3 12 12 C 1.46498 * 119.99770 * 180.02562 * 2 1 3 13 13 H 1.09001 * 110.90543 * 177.58595 * 12 2 1 14 14 C 1.55138 * 110.99026 * 301.45396 * 12 2 1 15 15 C 1.54321 * 103.02061 * 153.74577 * 14 12 2 16 16 N 1.47443 * 107.23033 * 337.71865 * 15 14 12 17 17 C 1.46909 * 110.99446 * 236.74081 * 16 15 14 18 18 C 1.50703 * 109.46840 * 176.64685 * 17 16 15 19 19 O 1.21293 * 120.00171 * 6.13334 * 18 17 16 20 20 N 1.34775 * 120.00186 * 186.12614 * 18 17 16 21 21 C 1.37094 * 120.00371 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99670 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00048 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00269 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00118 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47138 * 59.99426 * 25 23 21 27 27 H 1.48493 * 109.47132 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46579 * 299.99784 * 25 23 21 29 29 C 1.47845 * 108.56906 * 359.00732 * 16 15 14 30 30 H 1.08993 * 109.46932 * 270.00292 * 1 2 3 31 31 H 1.09007 * 109.46773 * 29.99976 * 1 2 3 32 32 H 1.08994 * 109.47241 * 149.99289 * 1 2 3 33 33 H 1.08994 * 109.47381 * 299.99756 * 5 3 2 34 34 H 1.08999 * 109.47117 * 60.00136 * 5 3 2 35 35 H 1.08999 * 110.48117 * 240.13015 * 8 6 5 36 36 H 1.09001 * 110.48762 * 2.77704 * 8 6 5 37 37 H 1.09001 * 110.90658 * 139.07760 * 9 8 6 38 38 H 1.09000 * 110.90554 * 262.67663 * 9 8 6 39 39 H 1.09000 * 110.62214 * 81.47363 * 10 9 8 40 40 H 1.09000 * 110.62244 * 204.31749 * 10 9 8 41 41 H 1.08991 * 110.70924 * 35.36436 * 14 12 2 42 42 H 1.08999 * 110.70792 * 272.12514 * 14 12 2 43 43 H 1.09005 * 109.88817 * 97.11725 * 15 14 12 44 44 H 1.08995 * 109.89229 * 218.14976 * 15 14 12 45 45 H 1.09000 * 109.47119 * 296.64796 * 17 16 15 46 46 H 1.09004 * 109.47025 * 56.65210 * 17 16 15 47 47 H 0.97002 * 119.99665 * 0.02562 * 20 18 17 48 48 H 0.97002 * 120.00455 * 179.97438 * 24 23 21 49 49 H 1.09000 * 110.37028 * 142.93138 * 29 16 15 50 50 H 1.09002 * 110.37264 * 265.27248 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3798 3.6352 0.0011 7 1 3.0786 3.5255 -0.8282 8 6 1.6230 4.9717 -0.1246 9 6 2.0322 5.7600 1.1433 10 6 3.3488 5.0531 1.5546 11 8 3.0961 3.6653 1.2470 12 6 2.1975 -1.2687 -0.0006 13 1 3.2730 -1.0969 -0.0434 14 6 1.8207 -2.1284 1.2346 15 6 2.0927 -3.5687 0.7518 16 7 2.0452 -3.5517 -0.7218 17 6 1.0502 -4.5068 -1.2274 18 6 0.9716 -4.4026 -2.7288 19 8 1.7510 -3.6931 -3.3291 20 7 0.0354 -5.0979 -3.4045 21 6 -0.0358 -5.0036 -4.7704 22 1 0.6581 -4.3717 -5.3048 23 6 -1.0013 -5.7200 -5.4669 24 7 -1.8459 -6.4884 -4.8165 25 14 -1.0987 -5.5908 -7.3279 26 1 0.1837 -6.0444 -7.9234 27 1 -2.2053 -6.4465 -7.8262 28 1 -1.3517 -4.1792 -7.7135 29 6 1.7338 -2.1766 -1.1669 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8901 -0.5139 32 1 -0.3633 -0.8899 -0.5139 33 1 0.7585 2.5303 -0.8891 34 1 0.7592 2.5298 0.8908 35 1 1.9360 5.5043 -1.0226 36 1 0.5465 4.8009 -0.1369 37 1 2.2111 6.8092 0.9082 38 1 1.2773 5.6610 1.9234 39 1 4.1864 5.4300 0.9677 40 1 3.5383 5.1843 2.6199 41 1 0.7686 -1.9991 1.4878 42 1 2.4561 -1.8807 2.0849 43 1 3.0780 -3.8925 1.0873 44 1 1.3287 -4.2411 1.1420 45 1 1.3434 -5.5189 -0.9483 46 1 0.0755 -4.2788 -0.7959 47 1 -0.5880 -5.6651 -2.9244 48 1 -2.5202 -6.9882 -5.3027 49 1 2.2856 -1.9381 -2.0761 50 1 0.6622 -2.0648 -1.3319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698555859.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:32 Heat of formation + Delta-G solvation = -127.326142 kcal Electronic energy + Delta-G solvation = -30096.545918 eV Core-core repulsion = 25929.947951 eV Total energy + Delta-G solvation = -4166.597967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.51964 -40.65365 -39.93713 -38.91280 -36.35894 -35.86889 -33.58635 -33.29261 -32.76414 -32.03336 -29.75629 -28.43622 -27.93610 -27.20848 -25.93308 -23.46429 -22.42812 -22.08699 -21.66478 -21.00112 -20.09642 -19.87224 -18.45856 -17.74955 -17.72364 -17.16429 -16.80554 -16.73688 -16.52892 -16.31094 -15.95577 -15.82637 -15.72133 -15.15879 -14.63847 -14.49870 -14.48278 -14.33587 -14.01678 -13.86590 -13.57731 -13.53675 -13.20979 -13.16282 -13.01068 -12.89460 -12.64585 -12.56864 -12.51885 -12.43314 -12.25037 -12.19264 -12.10817 -11.98890 -11.68504 -11.55468 -11.48672 -10.81087 -10.63441 -10.28159 -10.01635 -9.66097 -9.23713 -8.46889 -5.95348 1.38600 1.41011 1.51547 1.61768 1.88233 2.04270 2.28324 2.87005 2.95567 3.19865 3.35411 3.47641 3.61467 3.67490 3.70656 3.85784 4.01258 4.05084 4.10659 4.13591 4.26320 4.29329 4.30015 4.36426 4.43698 4.47008 4.54253 4.58047 4.61844 4.70404 4.73245 4.83884 4.84294 4.87795 4.93830 4.96894 4.99946 5.09813 5.12207 5.20564 5.23761 5.40420 5.47450 5.86294 5.98801 6.03533 6.12346 6.37601 6.60637 7.12745 7.17130 7.55532 8.12044 8.70138 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015628 B = 0.002260 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.250090 B =12386.270824 C =13535.580700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.608 5.608 3 C 0.505 3.495 4 O -0.580 6.580 5 C -0.130 4.130 6 C 0.084 3.916 7 H 0.047 0.953 8 C -0.147 4.147 9 C -0.147 4.147 10 C 0.032 3.968 11 O -0.395 6.395 12 C 0.132 3.868 13 H 0.082 0.918 14 C -0.135 4.135 15 C 0.043 3.957 16 N -0.530 5.530 17 C 0.055 3.945 18 C 0.437 3.563 19 O -0.618 6.618 20 N -0.571 5.571 21 C -0.332 4.332 22 H 0.076 0.924 23 C -0.011 4.011 24 N -0.918 5.918 25 Si 0.991 3.009 26 H -0.275 1.275 27 H -0.269 1.269 28 H -0.271 1.271 29 C 0.060 3.940 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.113 0.887 46 H 0.074 0.926 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.050 0.950 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.825 19.970 16.887 26.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.340 5.340 3 C 0.296 3.704 4 O -0.460 6.460 5 C -0.169 4.169 6 C 0.026 3.974 7 H 0.065 0.935 8 C -0.184 4.184 9 C -0.184 4.184 10 C -0.045 4.045 11 O -0.315 6.315 12 C 0.026 3.974 13 H 0.100 0.900 14 C -0.174 4.174 15 C -0.084 4.084 16 N -0.255 5.255 17 C -0.076 4.076 18 C 0.224 3.776 19 O -0.504 6.504 20 N -0.209 5.209 21 C -0.462 4.462 22 H 0.094 0.906 23 C -0.211 4.211 24 N -0.559 5.559 25 Si 0.814 3.186 26 H -0.200 1.200 27 H -0.193 1.193 28 H -0.197 1.197 29 C -0.069 4.069 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.151 0.849 34 H 0.142 0.858 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.130 0.870 46 H 0.092 0.908 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.069 0.931 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.315 19.963 16.346 25.804 hybrid contribution -0.809 -0.365 -0.875 1.246 sum -1.124 19.598 15.472 24.995 Atomic orbital electron populations 1.22100 0.77333 1.04483 1.03657 1.47863 1.08264 1.04835 1.73071 1.21383 0.87862 0.86501 0.74699 1.90692 1.16281 1.87838 1.51139 1.22039 0.98656 0.89128 1.07104 1.22555 0.92557 0.95239 0.87072 0.93478 1.23031 1.02241 0.93593 0.99547 1.23121 0.97069 1.00598 0.97656 1.23763 0.97769 0.81010 1.01914 1.88982 1.76641 1.26367 1.39480 1.22048 0.97040 0.83176 0.95103 0.90011 1.23022 1.03236 0.94010 0.97133 1.22928 1.03321 0.96796 0.85357 1.63200 1.47213 1.05102 1.09991 1.22028 0.95492 0.99112 0.90986 1.20801 0.82787 0.83380 0.90625 1.90507 1.44479 1.44135 1.71290 1.41902 1.30259 1.41745 1.06983 1.19573 1.16201 1.27237 0.83163 0.90602 1.25996 0.95010 0.95392 1.04727 1.69656 1.19094 1.28912 1.38253 0.85027 0.78053 0.78467 0.77024 1.20007 1.19337 1.19670 1.23024 0.98871 0.87661 0.97342 0.89885 0.88391 0.91551 0.84935 0.85800 0.89615 0.88018 0.88464 0.89611 0.92552 0.88228 0.89163 0.89485 0.89678 0.89863 0.86954 0.90810 0.76932 0.91263 0.93149 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 9.14 127.77 1.17 2.24 16 2 N -0.61 -15.10 2.91 -814.88 -2.37 -17.47 16 3 C 0.51 13.92 7.58 87.65 0.66 14.59 16 4 O -0.58 -21.89 14.89 7.81 0.12 -21.78 16 5 C -0.13 -2.23 3.74 29.85 0.11 -2.12 16 6 C 0.08 1.66 2.93 30.97 0.09 1.75 16 7 H 0.05 1.17 7.93 -2.39 -0.02 1.15 16 8 C -0.15 -1.62 6.64 31.58 0.21 -1.41 16 9 C -0.15 -1.45 7.15 31.89 0.23 -1.22 16 10 C 0.03 0.50 7.72 72.66 0.56 1.06 16 11 O -0.39 -9.73 10.58 -138.15 -1.46 -11.19 16 12 C 0.13 3.87 3.45 46.38 0.16 4.03 16 13 H 0.08 2.94 7.02 -2.39 -0.02 2.92 16 14 C -0.13 -2.96 6.53 31.78 0.21 -2.75 16 15 C 0.04 1.03 6.89 86.65 0.60 1.63 16 16 N -0.53 -17.99 5.07 -890.05 -4.51 -22.50 16 17 C 0.05 1.91 5.07 85.56 0.43 2.34 16 18 C 0.44 20.95 7.34 87.66 0.64 21.59 16 19 O -0.62 -34.89 13.89 -3.07 -0.04 -34.93 16 20 N -0.57 -29.20 5.29 -306.99 -1.62 -30.83 16 21 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 22 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 24 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 25 Si 0.99 42.89 29.55 68.60 2.03 44.91 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 C 0.06 2.12 4.83 86.77 0.42 2.54 16 30 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 31 H 0.10 1.09 6.44 -2.38 -0.02 1.08 16 32 H 0.07 1.26 6.00 -2.39 -0.01 1.25 16 33 H 0.13 1.52 7.40 -2.39 -0.02 1.51 16 34 H 0.12 1.54 8.11 -2.39 -0.02 1.52 16 35 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 0.70 7.70 -2.39 -0.02 0.68 16 37 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.09 1.63 7.23 -2.39 -0.02 1.61 16 42 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 44 H 0.08 1.60 7.58 -2.39 -0.02 1.58 16 45 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 46 H 0.07 2.17 8.13 -2.38 -0.02 2.15 16 47 H 0.40 19.10 7.90 -92.71 -0.73 18.36 16 48 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 49 H 0.05 2.28 6.94 -2.39 -0.02 2.27 16 50 H 0.05 1.61 5.59 -2.39 -0.01 1.60 16 Total: -1.00 -80.40 393.40 -0.59 -80.98 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: 0.22 Total: 35.46 kcal Atomic # 6 Polarization: 19.31 SS G_CDS: 6.78 Total: 26.09 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -8.22 Total: -119.55 kcal Atomic # 8 Polarization: -66.51 SS G_CDS: -1.39 Total: -67.90 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -80.40 -0.59 -80.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698555859.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.342 kcal (2) G-P(sol) polarization free energy of solvation -80.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds