Wall clock time and date at job start Sat Apr 11 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.33346 * 117.94918 * 2 1 4 4 O 1.21284 * 118.24505 * 357.78063 * 3 2 1 5 5 C 1.50176 * 123.50892 * 177.75583 * 3 2 1 6 6 C 1.53069 * 109.89194 * 17.57977 * 5 3 2 7 7 C 1.53344 * 108.42399 * 311.10292 * 6 5 3 8 8 C 1.45756 * 117.94519 * 179.97438 * 2 1 3 9 9 H 1.09001 * 109.30070 * 78.99001 * 8 2 1 10 10 C 1.50707 * 109.29932 * 319.41391 * 8 2 1 11 11 O 1.21284 * 119.99815 * 329.80730 * 10 8 2 12 12 N 1.34774 * 120.00077 * 149.81945 * 10 8 2 13 13 C 1.46502 * 119.99819 * 174.87339 * 12 10 8 14 14 C 1.52991 * 109.54401 * 303.29787 * 13 12 10 15 15 N 1.46506 * 109.47117 * 305.39451 * 14 13 12 16 16 C 1.36940 * 119.99847 * 185.10354 * 15 14 13 17 17 H 1.08004 * 120.00328 * 5.27551 * 16 15 14 18 18 C 1.38809 * 119.99980 * 185.28513 * 16 15 14 19 19 N 1.31620 * 120.00017 * 5.40842 * 18 16 15 20 20 Si 1.86801 * 120.00297 * 185.41727 * 18 16 15 21 21 H 1.48507 * 109.46959 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47328 * 119.99598 * 20 18 16 23 23 H 1.48502 * 109.46987 * 239.99531 * 20 18 16 24 24 C 1.53176 * 109.54092 * 183.12223 * 13 12 10 25 25 C 1.53282 * 109.06580 * 297.02839 * 24 13 12 26 26 O 1.42904 * 109.46159 * 302.44783 * 25 24 13 27 27 C 1.42906 * 114.09675 * 61.15453 * 26 25 24 28 28 C 1.53090 * 109.41452 * 298.84549 * 27 26 25 29 29 H 1.09003 * 109.46713 * 273.81324 * 1 2 3 30 30 H 1.09004 * 109.46824 * 33.80745 * 1 2 3 31 31 H 1.08997 * 109.47209 * 153.80962 * 1 2 3 32 32 H 1.08997 * 109.40352 * 137.71381 * 5 3 2 33 33 H 1.09007 * 109.40051 * 257.53771 * 5 3 2 34 34 H 1.09003 * 109.66933 * 70.83227 * 6 5 3 35 35 H 1.08995 * 109.67605 * 191.36358 * 6 5 3 36 36 H 1.08989 * 109.60350 * 307.76960 * 7 6 5 37 37 H 1.09008 * 109.59683 * 187.28338 * 7 6 5 38 38 H 0.97000 * 120.00101 * 354.58994 * 12 10 8 39 39 H 1.08999 * 109.47188 * 65.38528 * 14 13 12 40 40 H 1.09000 * 109.47646 * 185.39245 * 14 13 12 41 41 H 0.96994 * 119.99775 * 5.09125 * 15 14 13 42 42 H 0.97004 * 120.00325 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.52541 * 57.01780 * 24 13 12 44 44 H 1.08996 * 109.52208 * 177.20456 * 24 13 12 45 45 H 1.08996 * 109.45866 * 182.44679 * 25 24 13 46 46 H 1.08999 * 109.46615 * 62.44732 * 25 24 13 47 47 H 1.09004 * 109.47811 * 178.86249 * 27 26 25 48 48 H 1.09000 * 109.49074 * 58.83439 * 27 26 25 49 49 H 1.09008 * 109.52356 * 297.70019 * 28 27 26 50 50 H 1.08999 * 109.57067 * 177.55161 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0900 1.1779 0.0000 4 8 1.4159 2.1853 -0.0414 5 6 3.5839 1.3239 0.0490 6 6 4.2494 0.0011 -0.3387 7 6 3.5946 -1.1259 0.4691 8 6 2.1481 -1.2876 0.0006 9 1 2.1434 -1.6984 -1.0091 10 6 1.4273 -2.2334 0.9264 11 8 0.8380 -1.8025 1.8949 12 7 1.4377 -3.5581 0.6782 13 6 0.8339 -4.4875 1.6363 14 6 1.4846 -4.3024 3.0085 15 7 2.9374 -4.4443 2.8833 16 6 3.7264 -4.4222 4.0023 17 1 3.2733 -4.3859 4.9820 18 6 5.1087 -4.4461 3.8774 19 7 5.6630 -4.3825 2.6853 20 14 6.1823 -4.5687 5.4011 21 1 5.3214 -4.6258 6.6099 22 1 7.0114 -5.7983 5.3249 23 1 7.0674 -3.3789 5.4800 24 6 1.0476 -5.9269 1.1579 25 6 0.3250 -6.1224 -0.1798 26 8 -1.0625 -5.8198 -0.0201 27 6 -1.3235 -4.4733 0.3813 28 6 -0.6691 -4.2116 1.7403 29 1 -0.3633 0.0683 1.0254 30 1 -0.3633 0.8539 -0.5718 31 1 -0.3633 -0.9221 -0.4536 32 1 3.8946 2.1032 -0.6468 33 1 3.8879 1.5983 1.0592 34 1 4.1091 -0.1817 -1.4041 35 1 5.3143 0.0453 -0.1106 36 1 3.6095 -0.8724 1.5290 37 1 4.1383 -2.0565 0.3054 38 1 1.8413 -3.8957 -0.1367 39 1 1.2483 -3.3098 3.3917 40 1 1.1037 -5.0576 3.6961 41 1 3.3402 -4.5541 2.0078 42 1 6.6289 -4.3996 2.5979 43 1 2.1137 -6.1136 1.0290 44 1 0.6421 -6.6197 1.8952 45 1 0.4364 -7.1568 -0.5048 46 1 0.7583 -5.4578 -0.9272 47 1 -2.3998 -4.3198 0.4605 48 1 -0.9119 -3.7869 -0.3586 49 1 -1.1093 -4.8698 2.4895 50 1 -0.8297 -3.1728 2.0289 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700252070.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:14 Heat of formation + Delta-G solvation = -122.779110 kcal Electronic energy + Delta-G solvation = -32699.735733 eV Core-core repulsion = 28533.334941 eV Total energy + Delta-G solvation = -4166.400793 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.24371 -41.23390 -39.53812 -37.57021 -36.96024 -35.48118 -35.00531 -33.37555 -32.34106 -32.01076 -30.73986 -28.18592 -28.12919 -26.21263 -25.33910 -24.58948 -23.26713 -23.08906 -22.24890 -20.41366 -19.64032 -19.22458 -18.76013 -17.64318 -17.55421 -17.13383 -16.95859 -16.82147 -16.47047 -16.29824 -15.93637 -15.49839 -15.35925 -15.26920 -15.09063 -14.88635 -14.67509 -14.43092 -14.20514 -13.80981 -13.68411 -13.48749 -13.23646 -13.17468 -13.04508 -13.00634 -12.82147 -12.78565 -12.53985 -12.27471 -12.08700 -11.98740 -11.96155 -11.87421 -11.65005 -11.35119 -11.12118 -10.92570 -10.64253 -10.48201 -9.97517 -9.71768 -8.90062 -7.92935 -5.17497 1.44615 1.45843 1.47526 1.51494 1.54910 1.86525 2.29474 2.55999 2.99024 3.38027 3.45731 3.51662 3.64510 3.69908 3.80775 3.82306 3.89204 4.00951 4.04623 4.17294 4.25062 4.30644 4.32311 4.47050 4.50781 4.56985 4.66061 4.75329 4.78701 4.81328 4.81840 4.85088 4.87429 4.89092 4.97999 5.05345 5.09260 5.13294 5.19228 5.22644 5.26147 5.29210 5.50966 5.62612 6.27721 6.28713 6.30748 6.58885 7.02074 7.28797 7.38954 8.10087 8.42526 9.28747 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007696 B = 0.005746 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3637.591682 B = 4871.948278 C = 7619.064058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.586 5.586 3 C 0.513 3.487 4 O -0.597 6.597 5 C -0.132 4.132 6 C -0.108 4.108 7 C -0.119 4.119 8 C 0.134 3.866 9 H 0.132 0.868 10 C 0.513 3.487 11 O -0.554 6.554 12 N -0.699 5.699 13 C 0.184 3.816 14 C 0.145 3.855 15 N -0.722 5.722 16 C -0.244 4.244 17 H 0.056 0.944 18 C -0.056 4.056 19 N -0.949 5.949 20 Si 0.956 3.044 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.295 1.295 24 C -0.146 4.146 25 C 0.064 3.936 26 O -0.394 6.394 27 C 0.073 3.927 28 C -0.157 4.157 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.097 0.903 38 H 0.410 0.590 39 H 0.014 0.986 40 H 0.018 0.982 41 H 0.380 0.620 42 H 0.251 0.749 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.067 0.933 47 H 0.105 0.895 48 H 0.057 0.943 49 H 0.074 0.926 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.010 1.019 -13.789 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.317 5.317 3 C 0.304 3.696 4 O -0.479 6.479 5 C -0.171 4.171 6 C -0.145 4.145 7 C -0.157 4.157 8 C 0.027 3.973 9 H 0.149 0.851 10 C 0.299 3.701 11 O -0.432 6.432 12 N -0.352 5.352 13 C 0.097 3.903 14 C 0.017 3.983 15 N -0.365 5.365 16 C -0.376 4.376 17 H 0.074 0.926 18 C -0.250 4.250 19 N -0.599 5.599 20 Si 0.787 3.213 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.222 1.222 24 C -0.185 4.185 25 C -0.012 4.012 26 O -0.313 6.313 27 C -0.004 4.004 28 C -0.197 4.197 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.061 0.939 37 H 0.115 0.885 38 H 0.247 0.753 39 H 0.031 0.969 40 H 0.036 0.964 41 H 0.214 0.786 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.131 0.869 46 H 0.085 0.915 47 H 0.123 0.877 48 H 0.075 0.925 49 H 0.093 0.907 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.868 1.700 -12.951 15.788 hybrid contribution 1.291 -0.041 1.203 1.765 sum -7.577 1.659 -11.748 14.078 Atomic orbital electron populations 1.21646 0.79198 1.03096 1.01657 1.47020 1.07822 1.05165 1.71670 1.20753 0.92284 0.81955 0.74628 1.90667 1.67771 1.36694 1.52815 1.21728 0.88652 1.01332 1.05414 1.21629 1.00874 0.90910 1.01101 1.21726 0.91898 1.02230 0.99870 1.21141 0.92915 0.82690 1.00528 0.85056 1.20841 0.79927 0.83390 0.85975 1.90666 1.44582 1.77620 1.30306 1.45824 1.59784 1.05308 1.24326 1.20395 0.92343 0.89284 0.88231 1.21053 0.84673 0.97463 0.95085 1.42148 1.00688 1.87722 1.05979 1.19434 0.88864 1.41592 0.87711 0.92603 1.25218 0.97328 1.03650 0.98766 1.69739 1.09648 1.58708 1.21791 0.85342 0.79051 0.76815 0.80106 1.20524 1.21650 1.22223 1.22387 1.02376 0.94009 0.99698 1.22734 0.80914 1.02904 0.94651 1.87914 1.25056 1.29680 1.88611 1.22514 1.01049 0.83318 0.93474 1.22480 0.93861 1.03438 0.99877 0.93926 0.90848 0.89630 0.86091 0.88611 0.88365 0.88746 0.93925 0.88466 0.75262 0.96862 0.96430 0.78612 0.93967 0.90265 0.90345 0.86928 0.91477 0.87701 0.92486 0.90746 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.26 8.74 127.77 1.12 3.38 16 2 N -0.59 -15.81 2.95 -831.52 -2.45 -18.27 16 3 C 0.51 15.10 7.47 87.71 0.66 15.76 16 4 O -0.60 -21.76 16.24 -3.04 -0.05 -21.80 16 5 C -0.13 -2.93 6.03 29.71 0.18 -2.75 16 6 C -0.11 -2.06 6.03 30.73 0.19 -1.87 16 7 C -0.12 -3.11 5.29 30.68 0.16 -2.95 16 8 C 0.13 3.20 3.07 44.36 0.14 3.33 16 9 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 10 C 0.51 14.98 5.38 87.66 0.47 15.45 16 11 O -0.55 -20.79 11.41 -3.04 -0.03 -20.82 16 12 N -0.70 -17.66 3.62 -422.40 -1.53 -19.18 16 13 C 0.18 5.29 0.32 3.72 0.00 5.29 16 14 C 0.15 5.85 4.81 86.38 0.42 6.26 16 15 N -0.72 -33.86 5.15 -343.45 -1.77 -35.63 16 16 C -0.24 -13.26 9.98 84.03 0.84 -12.43 16 17 H 0.06 3.11 7.83 -2.91 -0.02 3.09 16 18 C -0.06 -3.04 5.50 84.86 0.47 -2.57 16 19 N -0.95 -52.39 13.08 21.65 0.28 -52.10 16 20 Si 0.96 45.03 29.56 68.60 2.03 47.06 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 22 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 24 C -0.15 -3.67 4.84 30.75 0.15 -3.52 16 25 C 0.06 1.21 6.67 72.08 0.48 1.69 16 26 O -0.39 -8.63 10.77 -148.98 -1.60 -10.24 16 27 C 0.07 1.50 6.68 72.01 0.48 1.98 16 28 C -0.16 -4.11 4.80 30.68 0.15 -3.97 16 29 H 0.04 1.32 7.40 -2.39 -0.02 1.31 16 30 H 0.07 1.92 7.26 -2.39 -0.02 1.90 16 31 H 0.09 1.76 7.59 -2.39 -0.02 1.75 16 32 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.10 1.38 8.13 -2.39 -0.02 1.36 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.04 1.48 8.10 -2.39 -0.02 1.46 16 37 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 38 H 0.41 7.89 7.42 -92.71 -0.69 7.20 16 39 H 0.01 0.63 6.29 -2.39 -0.02 0.62 16 40 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.38 17.72 6.69 -92.71 -0.62 17.10 16 42 H 0.25 13.53 8.31 -92.71 -0.77 12.75 16 43 H 0.08 2.20 7.43 -2.39 -0.02 2.18 16 44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.07 1.00 7.02 -2.39 -0.02 0.98 16 47 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 48 H 0.06 1.05 7.75 -2.39 -0.02 1.04 16 49 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 50 H 0.08 2.33 6.20 -2.39 -0.01 2.31 16 Total: -1.00 -72.50 384.56 0.41 -72.09 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: -0.35 Total: 35.81 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 5.89 Total: 23.09 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -5.47 Total: -125.19 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -1.69 Total: -52.86 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -72.50 0.41 -72.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700252070.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.690 kcal (2) G-P(sol) polarization free energy of solvation -72.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds