Wall clock time and date at job start Sat Apr 11 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34777 * 119.99838 * 2 1 4 4 O 1.21284 * 119.99907 * 185.31349 * 3 2 1 5 5 C 1.50700 * 120.00240 * 5.31271 * 3 2 1 6 6 H 1.09009 * 110.74814 * 29.81468 * 5 3 2 7 7 C 1.55304 * 110.85033 * 153.28243 * 5 3 2 8 8 C 1.55209 * 100.82792 * 152.18187 * 7 5 3 9 9 O 1.43651 * 105.25643 * 323.82060 * 8 7 5 10 10 C 1.43230 * 109.97266 * 24.28260 * 9 8 7 11 11 C 1.46501 * 120.00488 * 179.97438 * 2 1 3 12 12 H 1.08992 * 109.47389 * 180.02562 * 11 2 1 13 13 C 1.53004 * 109.47012 * 300.00670 * 11 2 1 14 14 N 1.46905 * 109.46847 * 304.99605 * 13 11 2 15 15 C 1.46899 * 110.99917 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47078 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00012 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99822 * 179.97438 * 16 15 14 19 19 C 1.37093 * 119.99936 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99750 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00093 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99800 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99839 * 359.72776 * 21 19 18 24 24 H 1.48498 * 109.47093 * 90.00373 * 23 21 19 25 25 H 1.48499 * 109.47029 * 209.99872 * 23 21 19 26 26 H 1.48492 * 109.47110 * 329.99966 * 23 21 19 27 27 C 1.53006 * 109.46782 * 60.00029 * 11 2 1 28 28 C 1.52993 * 117.49916 * 248.75058 * 27 11 2 29 29 C 1.52996 * 117.49525 * 180.09002 * 27 11 2 30 30 H 1.08990 * 109.47214 * 269.25830 * 1 2 3 31 31 H 1.09003 * 109.46914 * 29.26505 * 1 2 3 32 32 H 1.09009 * 109.46951 * 149.25782 * 1 2 3 33 33 H 1.09001 * 111.12259 * 270.24824 * 7 5 3 34 34 H 1.09006 * 111.12253 * 34.40592 * 7 5 3 35 35 H 1.08994 * 110.36612 * 204.80169 * 8 7 5 36 36 H 1.08995 * 110.21001 * 82.75022 * 8 7 5 37 37 H 1.09006 * 109.83265 * 238.77310 * 10 9 8 38 38 H 1.09002 * 109.83206 * 117.80516 * 10 9 8 39 39 H 1.08995 * 109.47165 * 184.99757 * 13 11 2 40 40 H 1.09004 * 109.47208 * 64.99413 * 13 11 2 41 41 H 1.00899 * 110.99742 * 303.95835 * 14 13 11 42 42 H 1.09004 * 109.47078 * 60.00146 * 15 14 13 43 43 H 1.08999 * 109.47315 * 300.00262 * 15 14 13 44 44 H 0.96997 * 119.99923 * 0.02562 * 18 16 15 45 45 H 0.97001 * 119.99410 * 179.97438 * 22 21 19 46 46 H 1.08997 * 115.54871 * 34.42057 * 27 11 2 47 47 H 1.09003 * 117.50224 * 359.97438 * 28 27 11 48 48 H 1.08998 * 117.50290 * 145.02448 * 28 27 11 49 49 H 1.09002 * 117.49663 * 214.97775 * 29 27 11 50 50 H 1.09001 * 117.50557 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3478 1.1695 -0.0973 5 6 1.3902 2.4695 0.1208 6 1 0.4747 2.3366 0.6974 7 6 2.2882 3.5666 0.7548 8 6 1.6686 4.8463 0.1324 9 8 1.2901 4.4724 -1.2020 10 6 1.0814 3.0572 -1.2729 11 6 2.1976 -1.2687 0.0006 12 1 3.2692 -1.0695 0.0009 13 6 1.8279 -2.0705 1.2501 14 7 2.0713 -1.2531 2.4462 15 6 1.7273 -1.9924 3.6681 16 6 1.9901 -1.1241 4.8714 17 8 2.4211 0.0002 4.7255 18 7 1.7452 -1.5965 6.1097 19 6 1.9848 -0.8068 7.2044 20 1 2.3694 0.1941 7.0745 21 6 1.7329 -1.2941 8.4811 22 7 1.9621 -0.5368 9.5305 23 14 1.0606 -3.0224 8.7053 24 1 2.1887 -3.9797 8.8320 25 1 0.2274 -3.0739 9.9335 26 1 0.2313 -3.3874 7.5289 27 6 1.8280 -2.0715 -1.2484 28 6 1.0117 -3.3502 -1.0503 29 6 2.4915 -3.4379 -1.4317 30 1 -0.3633 -0.0133 1.0275 31 1 -0.3633 0.8965 -0.5024 32 1 -0.3633 -0.8833 -0.5254 33 1 2.1965 3.5701 1.8410 34 1 3.3282 3.4472 0.4507 35 1 2.4046 5.6498 0.1058 36 1 0.7921 5.1555 0.7017 37 1 1.7508 2.6213 -2.0146 38 1 0.0454 2.8491 -1.5406 39 1 2.4377 -2.9727 1.2964 40 1 0.7741 -2.3459 1.2065 41 1 3.0271 -0.9310 2.4757 42 1 2.3367 -2.8940 3.7310 43 1 0.6730 -2.2677 3.6415 44 1 1.4002 -2.4955 6.2263 45 1 1.7858 -0.8769 10.4216 46 1 1.6318 -1.4829 -2.1446 47 1 0.7382 -3.6198 -0.0301 48 1 0.2787 -3.6032 -1.8163 49 1 2.7314 -3.7484 -2.4487 50 1 3.1916 -3.7648 -0.6629 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700722135.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:27 Heat of formation + Delta-G solvation = -73.143641 kcal Electronic energy + Delta-G solvation = -30636.331474 eV Core-core repulsion = 26472.083037 eV Total energy + Delta-G solvation = -4164.248437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.71478 -39.29314 -38.41536 -37.85504 -35.49532 -34.78131 -33.86115 -32.42591 -31.68191 -30.05931 -29.10293 -27.16787 -26.33974 -24.47408 -23.31581 -23.04127 -22.49464 -22.30051 -20.05219 -19.42453 -18.96555 -18.28604 -17.73547 -16.97018 -16.49787 -16.16767 -15.89480 -15.62173 -15.44558 -15.06759 -14.86496 -14.63182 -14.27561 -13.89942 -13.61240 -13.53159 -13.45643 -13.28371 -13.08934 -12.97571 -12.52085 -12.45448 -12.22147 -12.11199 -11.96654 -11.71204 -11.62022 -11.54722 -11.37803 -11.32703 -11.18142 -10.99397 -10.77527 -10.62296 -10.28241 -9.99673 -9.85103 -9.61991 -9.59310 -8.73639 -8.55585 -8.22096 -8.16365 -6.33037 -3.84505 2.54473 2.82062 2.99959 3.04192 3.12712 3.50912 3.67697 3.71927 3.97012 4.08143 4.22292 4.44604 4.47638 4.61360 4.66365 4.73876 4.79530 4.84778 4.93869 5.00268 5.04607 5.10083 5.13441 5.19813 5.28321 5.34351 5.35758 5.41115 5.48400 5.54803 5.57790 5.59843 5.62182 5.70626 5.77137 5.80071 5.82171 5.84569 5.86767 5.90075 6.07128 6.45374 6.73828 7.03878 7.32330 7.51205 7.56308 8.12446 8.15878 8.57817 8.93102 9.40331 9.80793 10.80133 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009922 B = 0.003149 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.261410 B = 8890.038556 C =11132.522913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.589 5.589 3 C 0.537 3.463 4 O -0.538 6.538 5 C -0.145 4.145 6 H 0.108 0.892 7 C -0.139 4.139 8 C 0.051 3.949 9 O -0.383 6.383 10 C 0.071 3.929 11 C 0.174 3.826 12 H 0.104 0.896 13 C 0.045 3.955 14 N -0.662 5.662 15 C 0.049 3.951 16 C 0.450 3.550 17 O -0.562 6.562 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.270 1.270 27 C -0.160 4.160 28 C -0.184 4.184 29 C -0.172 4.172 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.079 0.921 41 H 0.352 0.648 42 H 0.043 0.957 43 H 0.085 0.915 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.108 0.892 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.095 0.905 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.625 -3.645 -23.307 24.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.321 5.321 3 C 0.325 3.675 4 O -0.414 6.414 5 C -0.166 4.166 6 H 0.126 0.874 7 C -0.177 4.177 8 C -0.025 4.025 9 O -0.302 6.302 10 C -0.007 4.007 11 C 0.070 3.930 12 H 0.122 0.878 13 C -0.085 4.085 14 N -0.295 5.295 15 C -0.084 4.084 16 C 0.235 3.765 17 O -0.444 6.444 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.180 4.180 28 C -0.221 4.221 29 C -0.210 4.210 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.171 0.829 42 H 0.061 0.939 43 H 0.103 0.897 44 H 0.202 0.798 45 H 0.084 0.916 46 H 0.126 0.874 47 H 0.120 0.880 48 H 0.112 0.888 49 H 0.113 0.887 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.329 -2.372 -23.404 24.120 hybrid contribution -0.042 -2.362 0.790 2.491 sum -5.371 -4.734 -22.614 23.720 Atomic orbital electron populations 1.21769 0.79606 1.02447 1.02617 1.47446 1.06776 1.04943 1.72935 1.20034 0.87563 0.84648 0.75261 1.90678 1.14164 1.86966 1.49622 1.22893 1.00981 0.94111 0.98624 0.87432 1.23290 1.00759 0.91705 1.01960 1.23481 0.99013 0.97342 0.82639 1.88388 1.90068 1.21788 1.29939 1.22962 1.00887 0.81641 0.95161 1.20502 0.98121 0.82654 0.91700 0.87829 1.22491 1.01615 0.94271 0.90122 1.60019 1.31475 1.38376 0.99598 1.21699 1.01481 0.94917 0.90279 1.19693 0.84602 0.88624 0.83546 1.90575 1.48569 1.19912 1.85331 1.42200 1.59595 1.15253 1.05988 1.19428 1.41317 0.99976 0.82646 0.86316 1.25039 0.97764 0.98190 0.95165 1.69626 1.47725 1.36391 0.98375 0.86669 0.79572 0.84536 0.78579 1.19680 1.20157 1.19522 1.22610 1.05639 0.90131 0.99584 1.23196 0.94363 1.01330 1.03214 1.22969 0.95841 0.99287 1.02875 0.91639 0.91569 0.90993 0.88775 0.88678 0.89327 0.91819 0.91094 0.90909 0.94427 0.90281 0.82874 0.93913 0.89654 0.79757 0.91610 0.87367 0.87971 0.88832 0.88653 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 8.96 59.85 0.54 1.19 16 2 N -0.59 -6.51 2.48 -173.93 -0.43 -6.94 16 3 C 0.54 7.21 6.69 -10.99 -0.07 7.13 16 4 O -0.54 -9.10 15.20 5.55 0.08 -9.02 16 5 C -0.14 -1.64 2.37 -89.83 -0.21 -1.85 16 6 H 0.11 1.10 6.95 -51.92 -0.36 0.74 16 7 C -0.14 -1.68 6.53 -24.34 -0.16 -1.84 16 8 C 0.05 0.53 7.78 38.33 0.30 0.83 16 9 O -0.38 -4.58 11.36 -35.23 -0.40 -4.98 16 10 C 0.07 0.72 7.10 37.88 0.27 0.99 16 11 C 0.17 1.87 2.67 -67.92 -0.18 1.69 16 12 H 0.10 1.36 6.91 -51.93 -0.36 1.00 16 13 C 0.05 0.49 3.61 -3.82 -0.01 0.48 16 14 N -0.66 -9.95 5.85 -115.05 -0.67 -10.63 16 15 C 0.05 0.79 6.17 -4.97 -0.03 0.75 16 16 C 0.45 10.08 7.82 -10.98 -0.09 10.00 16 17 O -0.56 -15.04 15.78 5.55 0.09 -14.95 16 18 N -0.59 -13.93 5.09 -10.96 -0.06 -13.99 16 19 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 20 H 0.12 3.84 7.39 -52.48 -0.39 3.46 16 21 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 22 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 23 Si 0.88 19.21 27.73 -169.99 -4.71 14.49 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.27 -5.34 6.53 56.52 0.37 -4.97 16 27 C -0.16 -1.32 4.96 -90.62 -0.45 -1.77 16 28 C -0.18 -1.25 9.52 -26.70 -0.25 -1.51 16 29 C -0.17 -1.26 9.94 -26.70 -0.27 -1.52 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.44 6.09 -51.93 -0.32 0.12 16 32 H 0.07 0.48 7.21 -51.92 -0.37 0.11 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.30 7.21 -51.93 -0.37 0.92 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.76 7.81 -51.93 -0.41 0.35 16 38 H 0.07 0.58 7.73 -51.93 -0.40 0.18 16 39 H 0.04 0.38 7.44 -51.93 -0.39 -0.01 16 40 H 0.08 0.78 6.30 -51.93 -0.33 0.45 16 41 H 0.35 6.02 8.43 -39.29 -0.33 5.69 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.37 7.63 5.77 -40.82 -0.24 7.40 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.10 0.71 5.80 -51.93 -0.30 0.41 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.10 0.72 7.66 -51.93 -0.40 0.33 16 LS Contribution 398.24 15.07 6.00 6.00 Total: -1.00 -34.54 398.24 -8.13 -42.67 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -7.93 Total: 15.39 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -0.87 Total: 6.86 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.39 Total: -56.47 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.23 Total: -28.95 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.54 -8.13 -42.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700722135.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.471 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds