Wall clock time and date at job start Sat Apr 11 2020 05:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34777 * 119.99838 * 2 1 4 4 O 1.21284 * 119.99907 * 185.31349 * 3 2 1 5 5 C 1.50700 * 120.00240 * 5.31271 * 3 2 1 6 6 H 1.09009 * 110.74814 * 29.81468 * 5 3 2 7 7 C 1.55304 * 110.85033 * 153.28243 * 5 3 2 8 8 C 1.55209 * 100.82792 * 152.18187 * 7 5 3 9 9 O 1.43651 * 105.25643 * 323.82060 * 8 7 5 10 10 C 1.43230 * 109.97266 * 24.28260 * 9 8 7 11 11 C 1.46501 * 120.00488 * 179.97438 * 2 1 3 12 12 H 1.08992 * 109.47389 * 180.02562 * 11 2 1 13 13 C 1.53004 * 109.47012 * 300.00670 * 11 2 1 14 14 N 1.46905 * 109.46847 * 304.99605 * 13 11 2 15 15 C 1.46899 * 110.99917 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47078 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00012 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99822 * 179.97438 * 16 15 14 19 19 C 1.37093 * 119.99936 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99750 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00093 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99800 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99839 * 359.72776 * 21 19 18 24 24 H 1.48498 * 109.47093 * 90.00373 * 23 21 19 25 25 H 1.48499 * 109.47029 * 209.99872 * 23 21 19 26 26 H 1.48492 * 109.47110 * 329.99966 * 23 21 19 27 27 C 1.53006 * 109.46782 * 60.00029 * 11 2 1 28 28 C 1.52993 * 117.49916 * 248.75058 * 27 11 2 29 29 C 1.52996 * 117.49525 * 180.09002 * 27 11 2 30 30 H 1.08990 * 109.47214 * 269.25830 * 1 2 3 31 31 H 1.09003 * 109.46914 * 29.26505 * 1 2 3 32 32 H 1.09009 * 109.46951 * 149.25782 * 1 2 3 33 33 H 1.09001 * 111.12259 * 270.24824 * 7 5 3 34 34 H 1.09006 * 111.12253 * 34.40592 * 7 5 3 35 35 H 1.08994 * 110.36612 * 204.80169 * 8 7 5 36 36 H 1.08995 * 110.21001 * 82.75022 * 8 7 5 37 37 H 1.09006 * 109.83265 * 238.77310 * 10 9 8 38 38 H 1.09002 * 109.83206 * 117.80516 * 10 9 8 39 39 H 1.08995 * 109.47165 * 184.99757 * 13 11 2 40 40 H 1.09004 * 109.47208 * 64.99413 * 13 11 2 41 41 H 1.00899 * 110.99742 * 303.95835 * 14 13 11 42 42 H 1.09004 * 109.47078 * 60.00146 * 15 14 13 43 43 H 1.08999 * 109.47315 * 300.00262 * 15 14 13 44 44 H 0.96997 * 119.99923 * 0.02562 * 18 16 15 45 45 H 0.97001 * 119.99410 * 179.97438 * 22 21 19 46 46 H 1.08997 * 115.54871 * 34.42057 * 27 11 2 47 47 H 1.09003 * 117.50224 * 359.97438 * 28 27 11 48 48 H 1.08998 * 117.50290 * 145.02448 * 28 27 11 49 49 H 1.09002 * 117.49663 * 214.97775 * 29 27 11 50 50 H 1.09001 * 117.50557 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3478 1.1695 -0.0973 5 6 1.3902 2.4695 0.1208 6 1 0.4747 2.3366 0.6974 7 6 2.2882 3.5666 0.7548 8 6 1.6686 4.8463 0.1324 9 8 1.2901 4.4724 -1.2020 10 6 1.0814 3.0572 -1.2729 11 6 2.1976 -1.2687 0.0006 12 1 3.2692 -1.0695 0.0009 13 6 1.8279 -2.0705 1.2501 14 7 2.0713 -1.2531 2.4462 15 6 1.7273 -1.9924 3.6681 16 6 1.9901 -1.1241 4.8714 17 8 2.4211 0.0002 4.7255 18 7 1.7452 -1.5965 6.1097 19 6 1.9848 -0.8068 7.2044 20 1 2.3694 0.1941 7.0745 21 6 1.7329 -1.2941 8.4811 22 7 1.9621 -0.5368 9.5305 23 14 1.0606 -3.0224 8.7053 24 1 2.1887 -3.9797 8.8320 25 1 0.2274 -3.0739 9.9335 26 1 0.2313 -3.3874 7.5289 27 6 1.8280 -2.0715 -1.2484 28 6 1.0117 -3.3502 -1.0503 29 6 2.4915 -3.4379 -1.4317 30 1 -0.3633 -0.0133 1.0275 31 1 -0.3633 0.8965 -0.5024 32 1 -0.3633 -0.8833 -0.5254 33 1 2.1965 3.5701 1.8410 34 1 3.3282 3.4472 0.4507 35 1 2.4046 5.6498 0.1058 36 1 0.7921 5.1555 0.7017 37 1 1.7508 2.6213 -2.0146 38 1 0.0454 2.8491 -1.5406 39 1 2.4377 -2.9727 1.2964 40 1 0.7741 -2.3459 1.2065 41 1 3.0271 -0.9310 2.4757 42 1 2.3367 -2.8940 3.7310 43 1 0.6730 -2.2677 3.6415 44 1 1.4002 -2.4955 6.2263 45 1 1.7858 -0.8769 10.4216 46 1 1.6318 -1.4829 -2.1446 47 1 0.7382 -3.6198 -0.0301 48 1 0.2787 -3.6032 -1.8163 49 1 2.7314 -3.7484 -2.4487 50 1 3.1916 -3.7648 -0.6629 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700722135.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:26 Heat of formation + Delta-G solvation = -100.327860 kcal Electronic energy + Delta-G solvation = -30637.510270 eV Core-core repulsion = 26472.083037 eV Total energy + Delta-G solvation = -4165.427234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.64995 -40.39050 -39.95111 -38.77197 -36.54498 -36.02972 -35.60939 -33.75928 -33.36659 -31.02292 -30.07228 -28.28217 -27.45487 -25.95169 -24.43377 -23.83408 -23.29982 -23.04887 -21.34846 -20.85168 -20.32608 -19.74479 -18.66138 -18.03470 -17.48845 -17.38480 -17.01564 -16.86595 -16.58968 -16.38485 -15.87606 -15.73192 -15.40078 -15.11069 -14.98132 -14.73088 -14.54780 -14.38917 -14.26693 -14.13139 -13.86818 -13.74119 -13.32003 -13.11150 -13.01436 -12.83270 -12.68351 -12.53212 -12.42569 -12.36585 -12.24022 -12.03643 -11.97958 -11.92292 -11.52403 -11.39013 -10.98758 -10.75908 -10.52194 -10.45972 -10.26062 -9.57705 -9.34150 -8.42208 -6.03434 1.29293 1.35033 1.44231 1.53465 1.94882 1.97229 2.22434 2.67245 2.81548 2.93489 3.14206 3.28997 3.33709 3.60233 3.81582 3.85871 3.90156 4.04782 4.07656 4.10833 4.12874 4.13975 4.23636 4.28083 4.35415 4.43515 4.48480 4.59469 4.61912 4.64560 4.72157 4.79634 4.81107 4.84104 4.87390 4.96374 5.03826 5.07462 5.08147 5.21227 5.30948 5.51262 5.61929 5.88040 5.88365 6.01957 6.23741 6.41424 6.58721 6.87241 7.17607 7.38651 7.96009 8.75608 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009922 B = 0.003149 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.261410 B = 8890.038556 C =11132.522913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.585 5.585 3 C 0.527 3.473 4 O -0.586 6.586 5 C -0.141 4.141 6 H 0.122 0.878 7 C -0.144 4.144 8 C 0.056 3.944 9 O -0.398 6.398 10 C 0.075 3.925 11 C 0.175 3.825 12 H 0.070 0.930 13 C 0.051 3.949 14 N -0.678 5.678 15 C 0.064 3.936 16 C 0.447 3.553 17 O -0.615 6.615 18 N -0.590 5.590 19 C -0.329 4.329 20 H 0.052 0.948 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.229 1.229 27 C -0.167 4.167 28 C -0.165 4.165 29 C -0.175 4.175 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.054 0.946 40 H 0.102 0.898 41 H 0.334 0.666 42 H 0.074 0.926 43 H 0.119 0.881 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.109 0.891 49 H 0.104 0.896 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.709 -7.354 -25.064 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.314 5.314 3 C 0.315 3.685 4 O -0.467 6.467 5 C -0.163 4.163 6 H 0.140 0.860 7 C -0.183 4.183 8 C -0.019 4.019 9 O -0.318 6.318 10 C -0.001 4.001 11 C 0.070 3.930 12 H 0.088 0.912 13 C -0.078 4.078 14 N -0.309 5.309 15 C -0.068 4.068 16 C 0.235 3.765 17 O -0.499 6.499 18 N -0.232 5.232 19 C -0.459 4.459 20 H 0.070 0.930 21 C -0.214 4.214 22 N -0.576 5.576 23 Si 0.786 3.214 24 H -0.183 1.183 25 H -0.200 1.200 26 H -0.152 1.152 27 C -0.186 4.186 28 C -0.201 4.201 29 C -0.213 4.213 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.152 0.848 42 H 0.092 0.908 43 H 0.137 0.863 44 H 0.226 0.774 45 H 0.089 0.911 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.128 0.872 49 H 0.122 0.878 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.462 -6.121 -25.199 27.277 hybrid contribution 0.998 -1.104 1.305 1.980 sum -7.464 -7.225 -23.893 26.054 Atomic orbital electron populations 1.21987 0.77530 1.04648 1.02664 1.47570 1.08049 1.04416 1.71405 1.20452 0.87200 0.85968 0.74836 1.90651 1.16235 1.87710 1.52060 1.22909 1.00843 0.92869 0.99632 0.85963 1.23236 0.99933 0.93657 1.01426 1.23530 0.99803 0.96464 0.82139 1.88360 1.90220 1.22644 1.30587 1.23029 1.02457 0.80703 0.93956 1.20462 0.96430 0.82888 0.93177 0.91213 1.22578 1.03127 0.94038 0.88033 1.60040 1.30380 1.39792 1.00725 1.21629 1.03979 0.93990 0.87180 1.21021 0.82001 0.88588 0.84868 1.90560 1.50230 1.22800 1.86324 1.42008 1.60275 1.15653 1.05226 1.18990 1.43117 0.98575 0.85192 0.92959 1.26145 0.97251 1.04243 0.93780 1.69815 1.48907 1.39561 0.99294 0.85344 0.79432 0.76662 0.79931 1.18275 1.20025 1.15167 1.22417 1.07599 0.90443 0.98178 1.23266 0.94086 0.98814 1.03983 1.23051 0.96575 0.98233 1.03420 0.92533 0.89732 0.88595 0.89896 0.91094 0.88422 0.90102 0.91982 0.87738 0.92850 0.88022 0.84837 0.90781 0.86310 0.77446 0.91143 0.87437 0.87456 0.87217 0.87784 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 8.96 127.77 1.15 2.17 16 2 N -0.58 -12.43 2.48 -822.57 -2.04 -14.48 16 3 C 0.53 14.57 6.69 87.66 0.59 15.16 16 4 O -0.59 -21.34 15.20 -3.04 -0.05 -21.39 16 5 C -0.14 -3.21 2.37 -10.28 -0.02 -3.24 16 6 H 0.12 2.38 6.95 -2.38 -0.02 2.36 16 7 C -0.14 -3.71 6.53 32.14 0.21 -3.50 16 8 C 0.06 1.17 7.78 72.74 0.57 1.74 16 9 O -0.40 -9.26 11.36 -148.98 -1.69 -10.95 16 10 C 0.08 1.47 7.10 72.45 0.51 1.99 16 11 C 0.17 3.57 2.67 44.99 0.12 3.69 16 12 H 0.07 1.92 6.91 -2.39 -0.02 1.90 16 13 C 0.05 0.98 3.61 86.30 0.31 1.29 16 14 N -0.68 -19.53 5.85 -517.91 -3.03 -22.56 16 15 C 0.06 1.87 6.17 85.56 0.53 2.40 16 16 C 0.45 20.01 7.82 87.66 0.69 20.69 16 17 O -0.61 -34.44 15.78 -3.06 -0.05 -34.48 16 18 N -0.59 -27.50 5.09 -306.98 -1.56 -29.06 16 19 C -0.33 -19.32 10.16 84.04 0.85 -18.47 16 20 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 21 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 22 N -0.94 -56.45 13.96 21.66 0.30 -56.15 16 23 Si 0.97 38.24 27.73 68.60 1.90 40.14 16 24 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 25 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.23 -7.47 6.53 99.48 0.65 -6.82 16 27 C -0.17 -2.37 4.96 -10.80 -0.05 -2.42 16 28 C -0.16 -1.57 9.52 30.62 0.29 -1.28 16 29 C -0.18 -2.11 9.94 30.62 0.30 -1.81 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 0.87 6.09 -2.39 -0.01 0.85 16 32 H 0.10 0.90 7.21 -2.38 -0.02 0.88 16 33 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.07 2.15 7.21 -2.38 -0.02 2.13 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.32 7.81 -2.38 -0.02 1.30 16 38 H 0.10 1.38 7.73 -2.39 -0.02 1.36 16 39 H 0.05 0.89 7.44 -2.39 -0.02 0.87 16 40 H 0.10 1.52 6.30 -2.39 -0.02 1.51 16 41 H 0.33 11.69 8.43 -89.69 -0.76 10.93 16 42 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.39 14.84 5.77 -92.71 -0.53 14.31 16 45 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 46 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.11 0.94 5.80 -2.39 -0.01 0.93 16 48 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.09 1.19 7.66 -2.39 -0.02 1.17 16 Total: -1.00 -83.82 398.24 -0.09 -83.91 By element: Atomic # 1 Polarization: 47.38 SS G_CDS: -0.38 Total: 47.00 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 6.51 Total: 18.02 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -6.33 Total: -122.24 kcal Atomic # 8 Polarization: -65.03 SS G_CDS: -1.79 Total: -66.82 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 1.90 Total: 40.14 kcal Total: -83.82 -0.09 -83.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700722135.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.417 kcal (2) G-P(sol) polarization free energy of solvation -83.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds