Wall clock time and date at job start Sat Apr 11 2020 05:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46901 * 110.99569 * 2 1 4 4 C 1.53008 * 109.46899 * 293.95065 * 3 2 1 5 5 N 1.46498 * 109.47068 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00182 * 179.72586 * 5 4 3 7 7 O 1.21281 * 119.99781 * 0.27609 * 6 5 4 8 8 C 1.50703 * 120.00504 * 180.27589 * 6 5 4 9 9 H 1.09006 * 115.55037 * 60.06141 * 8 6 5 10 10 C 1.53055 * 117.51159 * 205.77320 * 8 6 5 11 11 C 1.52718 * 117.50684 * 274.36267 * 8 6 5 12 12 C 1.53253 * 117.83356 * 144.66830 * 11 8 6 13 13 C 1.53331 * 108.48267 * 265.31838 * 12 11 8 14 14 O 1.42872 * 109.32021 * 306.01694 * 13 12 11 15 15 C 1.42877 * 114.51540 * 64.36531 * 14 13 12 16 16 C 1.53248 * 117.83311 * 0.39047 * 11 8 6 17 17 C 1.46896 * 111.00190 * 123.94803 * 2 1 3 18 18 C 1.50698 * 109.46926 * 66.05125 * 17 2 1 19 19 O 1.21295 * 120.00419 * 359.97438 * 18 17 2 20 20 N 1.34777 * 120.00067 * 180.02562 * 18 17 2 21 21 C 1.37103 * 120.00200 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99560 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00106 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00007 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99934 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47452 * 59.99439 * 25 23 21 27 27 H 1.48501 * 109.47307 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46938 * 299.99372 * 25 23 21 29 29 H 1.08998 * 109.47089 * 60.00226 * 1 2 3 30 30 H 1.08998 * 109.46524 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47012 * 299.99938 * 1 2 3 32 32 H 1.08998 * 109.47200 * 173.95992 * 3 2 1 33 33 H 1.09001 * 109.47536 * 53.95049 * 3 2 1 34 34 H 1.08998 * 109.46851 * 60.00803 * 4 3 2 35 35 H 1.08992 * 109.47092 * 300.00556 * 4 3 2 36 36 H 0.97002 * 119.99913 * 0.02562 * 5 4 3 37 37 H 1.08990 * 117.50807 * 214.93601 * 10 8 6 38 38 H 1.09006 * 117.50059 * 359.97438 * 10 8 6 39 39 H 1.08998 * 109.63173 * 25.01740 * 12 11 8 40 40 H 1.09006 * 109.63203 * 145.62070 * 12 11 8 41 41 H 1.08997 * 109.49812 * 186.06604 * 13 12 11 42 42 H 1.08994 * 109.49678 * 65.96987 * 13 12 11 43 43 H 1.08999 * 109.49145 * 175.67539 * 15 14 13 44 44 H 1.09002 * 109.49181 * 55.58763 * 15 14 13 45 45 H 1.09007 * 109.63477 * 214.37458 * 16 11 8 46 46 H 1.08995 * 109.64058 * 334.98282 * 16 11 8 47 47 H 1.08994 * 109.47221 * 186.04850 * 17 2 1 48 48 H 1.09003 * 109.47273 * 306.05158 * 17 2 1 49 49 H 0.97003 * 120.00270 * 359.97438 * 20 18 17 50 50 H 0.97005 * 120.00296 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3184 5 7 2.1568 3.4249 -1.3187 6 6 1.9608 4.2220 -2.3876 7 8 1.3450 3.8087 -3.3473 8 6 2.5066 5.6267 -2.3905 9 1 3.5884 5.7109 -2.2867 10 6 1.7985 6.6585 -3.2718 11 6 1.6496 6.7177 -1.7521 12 6 2.3682 7.8466 -1.0053 13 6 2.4255 7.4850 0.4837 14 8 1.1064 7.1978 0.9515 15 6 0.5013 6.0509 0.3517 16 6 0.3029 6.3073 -1.1469 17 6 1.9955 -0.7658 1.1376 18 6 1.6371 -2.2203 0.9729 19 8 1.0049 -2.5832 0.0035 20 7 2.0182 -3.1178 1.9034 21 6 1.6926 -4.4411 1.7533 22 1 1.1304 -4.7642 0.8897 23 6 2.0860 -5.3665 2.7123 24 7 2.7706 -4.9733 3.7628 25 14 1.6430 -7.1695 2.5075 26 1 2.2357 -7.6849 1.2472 27 1 2.1755 -7.9439 3.6573 28 1 0.1659 -7.3134 2.4548 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.0797 1.3445 0.1081 33 1 1.5610 1.9274 0.8309 34 1 0.5471 2.0844 -1.4266 35 1 2.0657 1.5015 -2.1492 36 1 2.6496 3.7553 -0.5512 37 1 2.4144 7.4217 -3.7473 38 1 0.9381 6.3210 -3.8498 39 1 3.3802 7.9572 -1.3946 40 1 1.8188 8.7792 -1.1348 41 1 2.8364 8.3234 1.0461 42 1 3.0590 6.6088 0.6211 43 1 -0.4649 5.8628 0.8197 44 1 1.1479 5.1843 0.4900 45 1 -0.4219 7.1091 -1.2884 46 1 -0.0539 5.3977 -1.6300 47 1 3.0798 -0.6609 1.1756 48 1 1.5612 -0.3871 2.0628 49 1 2.5236 -2.8276 2.6789 50 1 3.0455 -5.6194 4.4322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713479051.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:16 Heat of formation + Delta-G solvation = -88.806347 kcal Electronic energy + Delta-G solvation = -29585.546253 eV Core-core repulsion = 25420.618630 eV Total energy + Delta-G solvation = -4164.927623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.96397 -39.22487 -38.64661 -37.08887 -36.52765 -34.68890 -33.81624 -31.74195 -31.26741 -30.68483 -29.63395 -27.74432 -25.78287 -24.71798 -24.22447 -23.54774 -22.97186 -21.28723 -20.67196 -19.30016 -19.18217 -17.86577 -17.42911 -16.73522 -16.51024 -16.37739 -16.03259 -15.76426 -15.43428 -15.18057 -14.96394 -14.63987 -14.35246 -14.26145 -13.85088 -13.78564 -13.54119 -13.44788 -13.31168 -12.98849 -12.89607 -12.43794 -12.15150 -11.91264 -11.84348 -11.56812 -11.53067 -11.43063 -11.29947 -11.21884 -11.09020 -10.93821 -10.85020 -10.53563 -10.44596 -10.22352 -10.08006 -9.69856 -9.47984 -9.25226 -8.50119 -8.00583 -7.91092 -6.42690 -3.83492 2.27754 2.75959 3.19655 3.21372 3.25423 3.29979 3.43044 3.88506 3.95509 4.08182 4.15965 4.24892 4.29410 4.35730 4.51589 4.60630 4.71965 4.81862 4.95535 4.96916 4.99444 5.09757 5.09939 5.18990 5.22424 5.23392 5.33483 5.35215 5.39279 5.56420 5.57439 5.60636 5.66194 5.67255 5.73074 5.80116 5.86363 5.90136 5.97669 6.18748 6.25945 6.53144 6.77134 7.15221 7.23738 7.29968 7.54285 7.98165 8.05054 8.60607 9.17107 9.52996 10.04888 10.74943 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023483 B = 0.001841 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.057931 B =15203.248898 C =15800.305560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.045 3.955 4 C 0.121 3.879 5 N -0.725 5.725 6 C 0.544 3.456 7 O -0.534 6.534 8 C -0.183 4.183 9 H 0.129 0.871 10 C -0.134 4.134 11 C -0.106 4.106 12 C -0.118 4.118 13 C 0.062 3.938 14 O -0.381 6.381 15 C 0.064 3.936 16 C -0.123 4.123 17 C 0.047 3.953 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.015 0.985 32 H 0.078 0.922 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.398 0.602 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.051 0.949 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.049 0.951 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.563 28.098 -4.967 28.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.002 4.002 5 N -0.376 5.376 6 C 0.330 3.670 7 O -0.410 6.410 8 C -0.204 4.204 9 H 0.146 0.854 10 C -0.172 4.172 11 C -0.107 4.107 12 C -0.155 4.155 13 C -0.015 4.015 14 O -0.300 6.300 15 C -0.012 4.012 16 C -0.160 4.160 17 C -0.084 4.084 18 C 0.228 3.772 19 O -0.460 6.460 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.034 0.966 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.232 0.768 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.070 0.930 43 H 0.114 0.886 44 H 0.070 0.930 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.107 0.893 48 H 0.067 0.933 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.818 27.272 -6.438 28.033 hybrid contribution 0.469 -0.431 1.334 1.478 sum 1.287 26.840 -5.104 27.351 Atomic orbital electron populations 1.22625 0.86456 1.04785 0.99070 1.61446 1.08959 1.10360 1.43110 1.22251 1.00749 0.89843 0.95583 1.21365 0.99597 0.80552 0.98734 1.45932 1.57970 1.14420 1.19322 1.19553 0.79361 0.85852 0.82244 1.90737 1.40732 1.75328 1.34242 1.22441 0.99882 0.89200 1.08857 0.85371 1.23049 1.02776 0.99131 0.92211 1.21532 0.96581 0.97009 0.95575 1.21867 1.00574 0.97309 0.95763 1.22612 0.84499 1.00809 0.93603 1.87899 1.29952 1.47595 1.64536 1.22604 0.98626 0.87917 0.92093 1.21876 0.95026 1.02613 0.96500 1.21866 1.00661 0.94260 0.91620 1.19697 0.85581 0.86589 0.85288 1.90495 1.43853 1.80082 1.31614 1.41857 1.49429 1.07363 1.21396 1.19652 1.33027 0.82261 1.07914 0.87940 1.25260 0.96800 1.00595 0.95298 1.69600 1.37985 1.35881 1.10898 0.85913 0.78908 0.81660 0.77715 1.19879 1.20998 1.19912 0.91891 0.88348 0.96617 0.90310 0.94593 0.91121 0.90182 0.76818 0.87716 0.87467 0.90384 0.90038 0.88615 0.93023 0.88563 0.93043 0.90013 0.90439 0.89340 0.93339 0.77504 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.96 60.07 0.54 0.83 16 2 N -0.51 -8.25 4.50 -244.37 -1.10 -9.35 16 3 C 0.04 0.51 5.07 -3.82 -0.02 0.49 16 4 C 0.12 1.39 5.60 -4.04 -0.02 1.37 16 5 N -0.72 -6.58 5.43 -60.29 -0.33 -6.91 16 6 C 0.54 5.81 5.84 -10.99 -0.06 5.74 16 7 O -0.53 -8.04 16.57 5.56 0.09 -7.95 16 8 C -0.18 -1.36 5.87 -91.89 -0.54 -1.90 16 9 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 10 C -0.13 -0.96 9.52 -26.80 -0.26 -1.21 16 11 C -0.11 -0.70 2.03 -154.49 -0.31 -1.01 16 12 C -0.12 -0.59 5.92 -26.43 -0.16 -0.74 16 13 C 0.06 0.35 6.84 37.33 0.26 0.60 16 14 O -0.38 -3.16 10.69 -35.23 -0.38 -3.53 16 15 C 0.06 0.47 6.84 37.33 0.26 0.73 16 16 C -0.12 -0.92 5.59 -26.43 -0.15 -1.06 16 17 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 18 C 0.44 10.30 7.47 -10.99 -0.08 10.22 16 19 O -0.58 -15.38 13.91 5.54 0.08 -15.30 16 20 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 21 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 25 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 H 0.06 0.90 6.47 -51.93 -0.34 0.57 16 30 H 0.10 1.93 5.82 -51.93 -0.30 1.63 16 31 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.82 7.93 -51.93 -0.41 0.41 16 33 H 0.04 0.37 8.12 -51.93 -0.42 -0.06 16 34 H 0.07 0.89 6.55 -51.93 -0.34 0.55 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.40 2.58 8.18 -40.82 -0.33 2.25 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.11 0.93 7.90 -51.93 -0.41 0.52 16 39 H 0.08 0.28 8.08 -51.93 -0.42 -0.14 16 40 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.36 7.72 -51.93 -0.40 -0.05 16 45 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 46 H 0.08 0.70 6.83 -51.93 -0.35 0.35 16 47 H 0.09 1.36 7.93 -51.93 -0.41 0.95 16 48 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 49 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 50 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 402.81 15.07 6.07 6.07 Total: -1.00 -33.59 402.81 -8.94 -42.53 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -8.20 Total: 9.34 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -0.82 Total: 6.92 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.76 Total: -54.04 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.21 Total: -26.78 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.59 -8.94 -42.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713479051.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.276 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds