Wall clock time and date at job start Sat Apr 11 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99763 * 2 1 4 4 C 1.53786 * 113.61076 * 149.99867 * 3 2 1 5 5 C 1.53781 * 87.08071 * 89.19982 * 4 3 2 6 6 C 1.50696 * 113.61188 * 139.97773 * 5 4 3 7 7 O 1.21282 * 120.00284 * 1.53132 * 6 5 4 8 8 N 1.34777 * 119.99889 * 181.52675 * 6 5 4 9 9 C 1.46501 * 120.00072 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46872 * 180.02562 * 9 8 6 11 11 H 1.09000 * 110.64429 * 303.29666 * 10 9 8 12 12 C 1.54589 * 110.72520 * 66.45295 * 10 9 8 13 13 C 1.54004 * 105.13670 * 140.49308 * 12 10 9 14 14 N 1.47893 * 107.06144 * 1.22406 * 13 12 10 15 15 C 1.46899 * 111.00398 * 214.16044 * 14 13 12 16 16 C 1.50694 * 109.47286 * 176.64056 * 15 14 13 17 17 O 1.21292 * 120.00014 * 6.12947 * 16 15 14 18 18 N 1.34777 * 119.99844 * 186.13259 * 16 15 14 19 19 C 1.37100 * 119.99992 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00025 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00059 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00036 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99887 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47162 * 270.00293 * 23 21 19 25 25 H 1.48491 * 109.47070 * 30.00471 * 23 21 19 26 26 H 1.48499 * 109.46933 * 150.00742 * 23 21 19 27 27 C 1.48540 * 105.82145 * 334.67077 * 14 13 12 28 28 C 1.53784 * 87.17121 * 25.38901 * 5 4 3 29 29 H 1.08998 * 109.47016 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47413 * 300.00216 * 1 2 3 31 31 H 1.08995 * 109.46948 * 60.00135 * 1 2 3 32 32 H 1.09001 * 112.84792 * 18.80441 * 3 2 1 33 33 H 1.08996 * 113.61579 * 334.64663 * 4 3 2 34 34 H 1.09001 * 113.60954 * 203.74808 * 4 3 2 35 35 H 1.08998 * 113.61297 * 270.79727 * 5 4 3 36 36 H 0.97007 * 120.00038 * 0.02562 * 8 6 5 37 37 H 1.08996 * 109.47062 * 60.00228 * 9 8 6 38 38 H 1.08997 * 109.47213 * 299.99841 * 9 8 6 39 39 H 1.08995 * 110.31051 * 21.57887 * 12 10 9 40 40 H 1.08995 * 110.39707 * 259.44773 * 12 10 9 41 41 H 1.08997 * 109.91343 * 241.86873 * 13 12 10 42 42 H 1.09004 * 109.91460 * 120.58283 * 13 12 10 43 43 H 1.08991 * 109.47011 * 56.63316 * 15 14 13 44 44 H 1.09002 * 109.46328 * 296.63348 * 15 14 13 45 45 H 0.96997 * 120.00064 * 359.97438 * 18 16 15 46 46 H 0.96996 * 120.00239 * 179.97438 * 22 21 19 47 47 H 1.08990 * 110.67087 * 157.63980 * 27 14 13 48 48 H 1.08997 * 110.66411 * 280.77449 * 27 14 13 49 49 H 1.08999 * 113.61549 * 89.15909 * 28 5 4 50 50 H 1.09006 * 113.61101 * 220.05790 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3756 1.3719 0.7046 5 6 4.0063 1.0353 -0.6569 6 6 5.2712 1.8030 -0.9425 7 8 5.7106 2.5763 -0.1179 8 7 5.9143 1.6303 -2.1143 9 6 7.1443 2.3762 -2.3917 10 6 7.6676 1.9988 -3.7791 11 1 7.8279 0.9229 -3.8498 12 6 6.6955 2.4807 -4.8802 13 6 7.5985 2.9912 -6.0185 14 7 8.9981 2.7776 -5.5911 15 6 9.8716 3.8453 -6.0961 16 6 11.2699 3.6397 -5.5735 17 8 11.5411 2.6389 -4.9441 18 7 12.2193 4.5679 -5.8053 19 6 13.4914 4.3810 -5.3294 20 1 13.7326 3.4903 -4.7684 21 6 14.4700 5.3382 -5.5680 22 7 15.6894 5.1589 -5.1123 23 14 14.0524 6.8792 -6.5378 24 1 14.2909 6.6344 -7.9829 25 1 12.6248 7.2272 -6.3236 26 1 14.9098 8.0010 -6.0777 27 6 8.9713 2.7698 -4.1060 28 6 2.7535 1.6496 -1.3035 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.3137 2.0789 0.3238 33 1 3.5175 0.5950 1.4557 34 1 3.6304 2.3668 1.0698 35 1 4.1107 -0.0346 -0.8371 36 1 5.5627 1.0120 -2.7740 37 1 7.8952 2.1310 -1.6407 38 1 6.9355 3.4455 -2.3612 39 1 6.0680 3.2885 -4.5039 40 1 6.0774 1.6538 -5.2297 41 1 7.4194 4.0531 -6.1866 42 1 7.3990 2.4293 -6.9311 43 1 9.4962 4.8116 -5.7593 44 1 9.8836 3.8198 -7.1857 45 1 12.0025 5.3680 -6.3089 46 1 16.3726 5.8269 -5.2791 47 1 9.8392 2.2441 -3.7082 48 1 8.9245 3.7869 -3.7167 49 1 2.8381 2.7205 -1.4882 50 1 2.3942 1.0964 -2.1713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713530871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:27 Heat of formation + Delta-G solvation = -83.209383 kcal Electronic energy + Delta-G solvation = -28998.593403 eV Core-core repulsion = 24833.908482 eV Total energy + Delta-G solvation = -4164.684921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.76275 -39.53791 -38.77348 -37.75937 -36.02826 -35.09380 -33.95419 -32.13857 -31.60466 -29.55385 -27.84323 -27.17009 -26.32370 -26.13963 -24.67388 -23.75478 -21.47032 -20.90667 -20.38446 -19.68031 -19.36561 -18.29228 -17.93055 -16.61767 -16.54687 -16.26547 -15.87740 -15.62482 -15.42700 -15.27335 -15.03437 -14.72212 -14.68830 -14.14409 -13.98254 -13.69022 -13.34242 -13.04193 -12.95324 -12.82476 -12.66968 -12.48064 -12.34419 -12.26114 -11.93005 -11.85693 -11.78797 -11.36614 -11.23282 -11.11248 -11.05982 -10.88846 -10.84597 -10.63609 -10.59669 -10.08864 -9.97592 -9.81719 -9.54676 -9.23509 -8.55124 -8.19586 -8.07500 -6.31083 -3.82474 2.42683 2.96711 3.02270 3.06667 3.14959 3.15825 3.73169 3.99316 4.01468 4.10313 4.14745 4.27558 4.42698 4.47904 4.65784 4.70742 4.78201 4.85696 4.88408 4.92890 4.96537 5.16238 5.17507 5.21417 5.26703 5.27720 5.32226 5.40701 5.54520 5.58344 5.62437 5.65639 5.68180 5.72497 5.76386 5.77584 5.81880 5.91352 6.03255 6.16537 6.29437 6.47305 6.70555 7.08242 7.13333 7.30762 7.58248 8.04288 8.14394 8.59909 8.95133 9.42280 9.82762 10.82003 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026385 B = 0.001713 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.959287 B =16345.410165 C =16775.338139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.369 6.369 3 C 0.061 3.939 4 C -0.117 4.117 5 C -0.130 4.130 6 C 0.519 3.481 7 O -0.540 6.540 8 N -0.725 5.725 9 C 0.127 3.873 10 C -0.105 4.105 11 H 0.091 0.909 12 C -0.125 4.125 13 C 0.033 3.967 14 N -0.493 5.493 15 C 0.034 3.966 16 C 0.451 3.549 17 O -0.560 6.560 18 N -0.590 5.590 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.277 1.277 27 C 0.048 3.952 28 C -0.141 4.141 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.401 0.599 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.078 0.922 43 H 0.048 0.952 44 H 0.092 0.908 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.111 0.889 48 H 0.041 0.959 49 H 0.093 0.907 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.900 -5.559 4.181 32.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.003 3.997 4 C -0.155 4.155 5 C -0.151 4.151 6 C 0.306 3.694 7 O -0.417 6.417 8 N -0.377 5.377 9 C 0.003 3.997 10 C -0.125 4.125 11 H 0.109 0.891 12 C -0.163 4.163 13 C -0.095 4.095 14 N -0.217 5.217 15 C -0.098 4.098 16 C 0.237 3.763 17 O -0.442 6.442 18 N -0.230 5.230 19 C -0.433 4.433 20 H 0.138 0.862 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.202 1.202 27 C -0.080 4.080 28 C -0.179 4.179 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.235 0.765 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.129 0.871 48 H 0.059 0.941 49 H 0.112 0.888 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -30.818 -6.242 5.006 31.840 hybrid contribution -0.711 2.075 -1.016 2.417 sum -31.529 -4.167 3.990 32.052 Atomic orbital electron populations 1.22833 0.80719 1.02944 1.00131 1.87888 1.19887 1.26433 1.94546 1.23113 0.94783 0.85350 0.96471 1.23112 0.92557 1.04094 0.95689 1.22710 0.91819 1.01121 0.99497 1.20529 0.85054 0.82502 0.81362 1.90710 1.67330 1.37364 1.46321 1.46034 1.26947 1.45891 1.18791 1.21381 0.85799 0.96157 0.96315 1.22364 0.95725 1.01775 0.92630 0.89114 1.22476 0.97542 1.00829 0.95474 1.22915 0.88626 0.99347 0.98623 1.64530 1.05457 1.43088 1.08615 1.22119 0.93570 0.92915 1.01152 1.19607 0.85835 0.85288 0.85597 1.90530 1.81434 1.28955 1.43263 1.42211 1.10520 1.19613 1.50626 1.19431 0.83160 1.08236 1.32520 0.86239 1.25032 0.95158 0.98134 0.97772 1.69618 1.01817 1.35677 1.44960 0.86678 0.78467 0.83418 0.80858 1.19595 1.19578 1.20178 1.23299 0.97718 0.98959 0.88048 1.23410 0.94509 1.01674 0.98339 0.89450 0.93834 0.93888 0.90297 0.89977 0.87516 0.86501 0.76532 0.90908 0.91469 0.91478 0.91118 0.93971 0.90376 0.93387 0.88976 0.79731 0.91611 0.87125 0.94068 0.88818 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.85 101.05 1.10 1.23 16 2 O -0.37 -2.73 10.63 -35.23 -0.37 -3.11 16 3 C 0.06 0.40 4.38 -25.83 -0.11 0.28 16 4 C -0.12 -0.92 7.23 -25.92 -0.19 -1.11 16 5 C -0.13 -1.01 4.08 -90.96 -0.37 -1.39 16 6 C 0.52 5.56 7.35 -10.99 -0.08 5.48 16 7 O -0.54 -8.06 15.91 5.56 0.09 -7.97 16 8 N -0.73 -6.63 5.40 -60.30 -0.33 -6.96 16 9 C 0.13 1.42 5.02 -4.04 -0.02 1.40 16 10 C -0.11 -1.18 3.12 -88.76 -0.28 -1.46 16 11 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 12 C -0.13 -1.18 6.20 -25.37 -0.16 -1.33 16 13 C 0.03 0.38 6.70 -2.75 -0.02 0.36 16 14 N -0.49 -7.74 5.11 -231.89 -1.18 -8.92 16 15 C 0.03 0.58 5.30 -4.98 -0.03 0.55 16 16 C 0.45 10.20 7.41 -10.99 -0.08 10.12 16 17 O -0.56 -14.76 13.87 5.55 0.08 -14.68 16 18 N -0.59 -14.07 5.09 -10.97 -0.06 -14.12 16 19 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 20 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 22 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 23 Si 0.88 19.41 27.74 -169.99 -4.71 14.70 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.05 0.74 5.04 -1.89 -0.01 0.73 16 28 C -0.14 -0.87 7.47 -25.83 -0.19 -1.07 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.08 0.41 7.87 -51.93 -0.41 0.00 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 0.93 7.45 -51.93 -0.39 0.55 16 35 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.40 2.64 8.33 -40.82 -0.34 2.30 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.80 8.07 -51.93 -0.42 0.39 16 39 H 0.07 0.59 7.80 -51.93 -0.41 0.19 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.04 0.45 7.68 -51.93 -0.40 0.06 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.72 7.98 -51.93 -0.41 0.31 16 44 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 46 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.11 2.10 6.43 -51.93 -0.33 1.76 16 48 H 0.04 0.64 7.92 -51.93 -0.41 0.23 16 49 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 50 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 402.90 15.07 6.07 6.07 Total: -1.00 -34.92 402.90 -8.71 -43.64 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -8.38 Total: 10.28 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -0.69 Total: 6.09 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.79 Total: -55.01 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.21 Total: -25.76 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.70 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.92 -8.71 -43.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713530871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.574 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds