Wall clock time and date at job start Sat Apr 11 2020 05:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00480 * 2 1 4 4 C 1.50704 * 109.47149 * 66.04099 * 3 2 1 5 5 O 1.21289 * 119.99977 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99754 * 180.02562 * 4 3 2 7 7 C 1.37095 * 120.00021 * 180.02562 * 6 4 3 8 8 H 1.08004 * 119.99655 * 359.97438 * 7 6 4 9 9 C 1.38948 * 120.00202 * 179.97438 * 7 6 4 10 10 N 1.31409 * 120.00178 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99875 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47366 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46904 * 120.00138 * 11 9 7 14 14 H 1.48500 * 109.47618 * 240.00034 * 11 9 7 15 15 C 1.46896 * 111.00364 * 236.03839 * 2 1 3 16 16 C 1.52997 * 109.47252 * 293.96202 * 15 2 1 17 17 H 1.08997 * 110.89009 * 57.42218 * 16 15 2 18 18 C 1.55156 * 111.00309 * 293.53903 * 16 15 2 19 19 C 1.54324 * 102.94313 * 206.38540 * 18 16 15 20 20 N 1.47014 * 107.27024 * 22.19539 * 19 18 16 21 21 C 1.34779 * 125.64968 * 181.01967 * 20 19 18 22 22 O 1.21283 * 120.00455 * 180.02562 * 21 20 19 23 23 C 1.50700 * 119.99989 * 0.02562 * 21 20 19 24 24 H 1.09003 * 110.41793 * 302.69314 * 23 21 20 25 25 C 1.54478 * 110.37139 * 64.99736 * 23 21 20 26 26 C 1.54510 * 104.06500 * 142.81210 * 25 23 21 27 27 C 1.54477 * 104.18108 * 359.93120 * 26 25 23 28 28 O 1.44415 * 110.37723 * 180.37967 * 23 21 20 29 29 C 1.47426 * 108.70560 * 1.28612 * 20 19 18 30 30 H 1.08993 * 109.47478 * 183.95908 * 1 2 3 31 31 H 1.08997 * 109.47324 * 303.96053 * 1 2 3 32 32 H 1.09007 * 109.46820 * 63.95647 * 1 2 3 33 33 H 1.08998 * 109.47609 * 186.04314 * 3 2 1 34 34 H 1.09005 * 109.46751 * 306.04061 * 3 2 1 35 35 H 0.97003 * 120.00093 * 359.97438 * 6 4 3 36 36 H 0.96999 * 120.00277 * 179.97438 * 10 9 7 37 37 H 1.08994 * 109.47197 * 173.95655 * 15 2 1 38 38 H 1.09005 * 109.46950 * 53.95869 * 15 2 1 39 39 H 1.09003 * 110.71764 * 88.02439 * 18 16 15 40 40 H 1.08994 * 110.87495 * 324.82259 * 18 16 15 41 41 H 1.09000 * 109.88203 * 262.77828 * 19 18 16 42 42 H 1.08999 * 110.00948 * 141.68617 * 19 18 16 43 43 H 1.09000 * 110.51268 * 24.16636 * 25 23 21 44 44 H 1.08999 * 110.51553 * 261.45556 * 25 23 21 45 45 H 1.09002 * 110.51305 * 118.64650 * 26 25 23 46 46 H 1.08994 * 110.51141 * 241.21979 * 26 25 23 47 47 H 1.09006 * 110.37498 * 94.92285 * 27 26 25 48 48 H 1.09000 * 110.37254 * 217.25804 * 27 26 25 49 49 H 1.09000 * 110.37061 * 94.48208 * 29 20 19 50 50 H 1.09002 * 110.36929 * 216.80461 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 8 1.0054 1.4454 2.1411 6 7 2.0182 3.3202 1.5232 7 6 1.6924 3.9349 2.7046 8 1 1.1300 3.3990 3.4549 9 6 2.0859 5.2471 2.9366 10 7 2.7706 5.8989 2.0238 11 14 1.6414 6.0847 4.5460 12 1 0.8741 5.1422 5.3992 13 1 2.8831 6.4917 5.2516 14 1 0.8143 7.2861 4.2670 15 6 1.9955 -0.7661 -1.1374 16 6 1.6314 -2.2427 -0.9701 17 1 0.5523 -2.3695 -0.8839 18 6 2.3633 -2.8611 0.2502 19 6 2.4512 -4.3565 -0.1209 20 7 2.3307 -4.4512 -1.5830 21 6 2.3402 -5.5926 -2.2997 22 8 2.2337 -5.5515 -3.5071 23 6 2.4830 -6.9200 -1.6007 24 1 3.3997 -6.9428 -1.0114 25 6 1.2574 -7.1878 -0.6993 26 6 1.0130 -8.7070 -0.8393 27 6 2.1176 -9.1801 -1.8100 28 8 2.4765 -7.9978 -2.5620 29 6 2.2043 -3.0905 -2.1361 30 1 -0.3634 -1.0251 0.0709 31 1 -0.3634 0.5740 0.8523 32 1 -0.3633 0.4512 -0.9234 33 1 3.0798 1.3444 -0.1082 34 1 1.5613 1.9273 -0.8310 35 1 2.5236 3.8013 0.8494 36 1 3.0449 6.8152 2.1856 37 1 3.0797 -0.6612 -1.1754 38 1 1.5612 -0.3874 -2.0627 39 1 1.7797 -2.7233 1.1604 40 1 3.3592 -2.4328 0.3638 41 1 1.6378 -4.9047 0.3544 42 1 3.4098 -4.7645 0.1993 43 1 0.3925 -6.6274 -1.0543 44 1 1.4814 -6.9309 0.3361 45 1 1.1161 -9.2011 0.1268 46 1 0.0263 -8.8977 -1.2614 47 1 2.9785 -9.5509 -1.2536 48 1 1.7328 -9.9534 -2.4749 49 1 3.1805 -2.7120 -2.4394 50 1 1.5159 -3.0869 -2.9812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713745304.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:39 Heat of formation + Delta-G solvation = -126.381041 kcal Electronic energy + Delta-G solvation = -29546.501148 eV Core-core repulsion = 25379.944164 eV Total energy + Delta-G solvation = -4166.556984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58367 -40.42539 -39.84367 -38.71062 -37.34300 -35.82515 -33.67275 -33.23553 -32.78132 -30.75200 -30.40559 -29.27660 -27.64410 -26.60161 -25.20564 -23.63896 -23.37148 -22.36344 -21.02939 -20.92796 -20.47090 -19.81258 -18.44337 -17.98563 -17.56643 -17.19284 -16.83475 -16.59354 -16.50019 -16.33773 -16.05078 -15.71087 -15.28381 -15.20649 -14.94838 -14.78135 -14.69709 -14.48950 -13.84234 -13.78332 -13.69743 -13.52267 -13.42214 -13.05624 -12.80132 -12.78552 -12.67577 -12.54028 -12.37340 -12.33194 -12.28497 -12.09984 -12.01611 -11.80003 -11.70377 -11.45937 -11.41425 -11.09363 -10.71650 -10.22430 -9.96179 -9.73639 -9.15201 -8.43773 -5.91847 1.38201 1.43212 1.43456 1.57168 1.66913 2.10326 2.30329 2.76866 2.96163 3.23660 3.28967 3.45523 3.60396 3.65755 3.78031 3.85523 3.88842 4.05708 4.18186 4.25786 4.28795 4.33114 4.36234 4.42738 4.45551 4.50963 4.57971 4.63293 4.64667 4.72738 4.75206 4.79073 4.80922 4.89707 4.94330 4.98246 5.03523 5.10924 5.13930 5.24121 5.32379 5.42116 5.44577 5.72499 5.91806 6.10591 6.24348 6.39344 6.64494 7.01223 7.16924 7.61316 8.17054 8.73874 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031463 B = 0.001747 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.727844 B =16020.578098 C =16450.860172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.526 5.526 3 C 0.057 3.943 4 C 0.444 3.556 5 O -0.611 6.611 6 N -0.578 5.578 7 C -0.329 4.329 8 H 0.080 0.920 9 C -0.015 4.015 10 N -0.922 5.922 11 Si 0.991 3.009 12 H -0.273 1.273 13 H -0.272 1.272 14 H -0.273 1.273 15 C 0.067 3.933 16 C -0.086 4.086 17 H 0.084 0.916 18 C -0.110 4.110 19 C 0.093 3.907 20 N -0.612 5.612 21 C 0.526 3.474 22 O -0.580 6.580 23 C 0.062 3.938 24 H 0.119 0.881 25 C -0.141 4.141 26 C -0.149 4.149 27 C 0.034 3.966 28 O -0.389 6.389 29 C 0.113 3.887 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.024 0.976 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.395 0.605 36 H 0.276 0.724 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.117 0.883 45 H 0.108 0.892 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.101 0.899 49 H 0.077 0.923 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 -25.653 -5.449 26.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.250 5.250 3 C -0.074 4.074 4 C 0.231 3.769 5 O -0.497 6.497 6 N -0.215 5.215 7 C -0.458 4.458 8 H 0.098 0.902 9 C -0.214 4.214 10 N -0.564 5.564 11 Si 0.816 3.184 12 H -0.197 1.197 13 H -0.198 1.198 14 H -0.198 1.198 15 C -0.061 4.061 16 C -0.105 4.105 17 H 0.103 0.897 18 C -0.148 4.148 19 C -0.029 4.029 20 N -0.346 5.346 21 C 0.315 3.685 22 O -0.459 6.459 23 C 0.001 3.999 24 H 0.136 0.864 25 C -0.179 4.179 26 C -0.187 4.187 27 C -0.042 4.042 28 O -0.308 6.308 29 C -0.010 4.010 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.229 0.771 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.135 0.865 45 H 0.126 0.874 46 H 0.094 0.906 47 H 0.101 0.899 48 H 0.119 0.881 49 H 0.095 0.905 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.279 -26.147 -5.362 26.692 hybrid contribution -0.269 1.500 -0.435 1.585 sum 0.009 -24.647 -5.798 25.320 Atomic orbital electron populations 1.22442 0.87180 1.02499 1.00082 1.61495 1.08501 1.11807 1.43241 1.21745 1.02155 0.89714 0.93834 1.20769 0.83567 0.82125 0.90420 1.90459 1.44975 1.65302 1.48985 1.41962 1.50239 1.11705 1.17615 1.19685 1.34133 0.96331 0.95672 0.90224 1.26010 0.96407 0.96720 1.02279 1.69678 1.38371 1.12605 1.35697 0.84888 0.78183 0.77873 0.77504 1.19708 1.19751 1.19848 1.22092 1.00965 0.92090 0.90948 1.22261 1.00646 0.93101 0.94512 0.89733 1.22511 1.01791 0.92363 0.98093 1.22471 1.03543 0.98615 0.78257 1.48456 1.71564 1.05326 1.09222 1.20492 0.75878 0.85471 0.86659 1.90701 1.51472 1.87510 1.16253 1.22955 1.01946 0.85159 0.89824 0.86371 1.22981 0.96060 0.97728 1.01110 1.22961 0.99821 0.94312 1.01572 1.23800 0.97885 0.87745 0.94792 1.89266 1.91060 1.17775 1.32680 1.22258 1.01331 0.80837 0.96549 0.90139 0.92660 0.95759 0.87136 0.91863 0.77132 0.91447 0.89274 0.93851 0.89713 0.90210 0.89278 0.89120 0.91613 0.86489 0.87355 0.90603 0.89937 0.88065 0.90521 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 8.98 127.69 1.15 1.91 16 2 N -0.53 -15.08 4.32 -927.06 -4.01 -19.09 16 3 C 0.06 1.84 5.45 85.56 0.47 2.30 16 4 C 0.44 20.26 7.47 87.66 0.66 20.91 16 5 O -0.61 -32.21 13.91 -3.06 -0.04 -32.25 16 6 N -0.58 -28.93 5.29 -306.99 -1.62 -30.56 16 7 C -0.33 -18.32 9.68 84.04 0.81 -17.50 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 10 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 11 Si 0.99 42.44 29.55 68.60 2.03 44.47 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 13 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 14 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 15 C 0.07 1.37 4.41 86.30 0.38 1.75 16 16 C -0.09 -1.53 2.91 -9.33 -0.03 -1.55 16 17 H 0.08 1.58 6.54 -2.39 -0.02 1.56 16 18 C -0.11 -1.75 6.24 31.78 0.20 -1.55 16 19 C 0.09 1.14 6.18 86.73 0.54 1.67 16 20 N -0.61 -11.39 3.32 -811.36 -2.70 -14.08 16 21 C 0.53 12.51 7.14 87.66 0.63 13.14 16 22 O -0.58 -19.84 16.81 15.34 0.26 -19.58 16 23 C 0.06 1.03 3.14 30.35 0.10 1.13 16 24 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 25 C -0.14 -1.50 5.39 31.61 0.17 -1.33 16 26 C -0.15 -1.23 7.08 31.61 0.22 -1.00 16 27 C 0.03 0.39 7.65 72.48 0.55 0.94 16 28 O -0.39 -8.53 10.91 -130.60 -1.43 -9.95 16 29 C 0.11 2.15 6.38 86.93 0.55 2.70 16 30 H 0.08 1.99 6.44 -2.39 -0.02 1.98 16 31 H 0.05 2.10 5.83 -2.39 -0.01 2.09 16 32 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.11 3.11 7.93 -2.39 -0.02 3.09 16 34 H 0.06 1.88 8.12 -2.38 -0.02 1.86 16 35 H 0.40 18.89 7.90 -92.71 -0.73 18.15 16 36 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 37 H 0.09 1.64 7.90 -2.39 -0.02 1.62 16 38 H 0.04 0.84 8.12 -2.38 -0.02 0.82 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.31 8.02 -2.39 -0.02 1.29 16 41 H 0.09 0.81 6.33 -2.39 -0.02 0.79 16 42 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.91 7.86 -2.39 -0.02 0.89 16 44 H 0.12 0.57 7.19 -2.39 -0.02 0.55 16 45 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 48 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.08 1.39 8.04 -2.39 -0.02 1.37 16 50 H 0.06 1.42 8.03 -2.39 -0.02 1.40 16 Total: -1.00 -76.72 396.95 -0.16 -76.88 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.21 Total: 29.99 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 6.86 Total: 23.21 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -8.04 Total: -112.77 kcal Atomic # 8 Polarization: -60.58 SS G_CDS: -1.21 Total: -61.79 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -76.72 -0.16 -76.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713745304.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.501 kcal (2) G-P(sol) polarization free energy of solvation -76.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds