Wall clock time and date at job start Sat Apr 11 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46487 * 1 3 3 C 1.34777 * 120.00484 * 2 1 4 4 O 1.21279 * 120.00446 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.99706 * 0.02562 * 3 2 1 6 6 H 1.09000 * 109.49068 * 55.02483 * 5 3 2 7 7 C 1.53094 * 109.47688 * 294.99900 * 5 3 2 8 8 C 1.53183 * 109.15859 * 182.40894 * 7 5 3 9 9 C 1.53176 * 109.03838 * 56.98139 * 8 7 5 10 10 C 1.53093 * 109.16348 * 303.01796 * 9 8 7 11 11 O 1.42902 * 109.48140 * 175.04535 * 5 3 2 12 12 C 1.46503 * 120.00214 * 180.02562 * 2 1 3 13 13 H 1.08999 * 110.27968 * 177.90605 * 12 2 1 14 14 C 1.54606 * 110.30682 * 55.71346 * 12 2 1 15 15 C 1.54935 * 102.92016 * 219.13069 * 14 12 2 16 16 N 1.48533 * 103.22834 * 37.41378 * 15 14 12 17 17 C 1.46900 * 110.99752 * 200.27983 * 16 15 14 18 18 C 1.50705 * 109.47127 * 287.39446 * 17 16 15 19 19 O 1.21288 * 120.00061 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00014 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99856 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00233 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99744 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99778 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00220 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46974 * 90.00460 * 25 23 21 27 27 H 1.48501 * 109.47465 * 210.00601 * 25 23 21 28 28 H 1.48501 * 109.47352 * 330.00670 * 25 23 21 29 29 C 1.47901 * 105.81955 * 320.79260 * 16 15 14 30 30 H 1.09005 * 109.47582 * 89.99530 * 1 2 3 31 31 H 1.09004 * 109.47468 * 210.00205 * 1 2 3 32 32 H 1.09001 * 109.47191 * 329.99937 * 1 2 3 33 33 H 1.08997 * 109.52488 * 62.50980 * 7 5 3 34 34 H 1.08995 * 109.52127 * 302.30966 * 7 5 3 35 35 H 1.09002 * 109.54436 * 297.11028 * 8 7 5 36 36 H 1.09003 * 109.54353 * 176.84876 * 8 7 5 37 37 H 1.09004 * 109.52469 * 183.11228 * 9 8 7 38 38 H 1.08998 * 109.57356 * 62.95334 * 9 8 7 39 39 H 1.09002 * 109.48198 * 177.59219 * 10 9 8 40 40 H 1.08999 * 109.48029 * 297.61833 * 10 9 8 41 41 H 1.09005 * 110.71924 * 337.48765 * 14 12 2 42 42 H 1.08994 * 110.72279 * 100.76984 * 14 12 2 43 43 H 1.08999 * 110.66567 * 278.97699 * 15 14 12 44 44 H 1.09003 * 110.66522 * 155.85007 * 15 14 12 45 45 H 1.08995 * 109.47385 * 47.39703 * 17 16 15 46 46 H 1.09007 * 109.47134 * 167.40128 * 17 16 15 47 47 H 0.97000 * 120.00396 * 359.97438 * 20 18 17 48 48 H 0.97006 * 120.00362 * 179.97438 * 24 23 21 49 49 H 1.09004 * 109.91746 * 265.97524 * 29 16 15 50 50 H 1.09001 * 110.08099 * 144.77925 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3516 1.1671 0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.6938 2.4926 0.8428 7 6 0.6014 2.6097 -1.3072 8 6 -0.1131 3.9645 -1.3250 9 6 0.9234 5.0785 -1.1488 10 6 1.6949 4.8457 0.1528 11 8 2.3095 3.5560 0.1168 12 6 2.1974 -1.2687 -0.0006 13 1 3.2712 -1.0850 -0.0378 14 6 1.7584 -2.1413 -1.1990 15 6 1.7257 -3.5678 -0.5953 16 7 1.2062 -3.3439 0.7781 17 6 1.5444 -4.4698 1.6589 18 6 0.6962 -5.6622 1.2983 19 8 -0.1103 -5.5820 0.3959 20 7 0.8339 -6.8175 1.9784 21 6 0.0626 -7.9024 1.6499 22 1 -0.6555 -7.8310 0.8464 23 6 0.2042 -9.0934 2.3515 24 7 -0.5354 -10.1331 2.0370 25 14 1.4458 -9.2167 3.7416 26 1 0.7973 -8.8295 5.0202 27 1 1.9410 -10.6132 3.8408 28 1 2.5862 -8.3053 3.4691 29 6 1.8393 -2.0932 1.2497 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 -0.1347 1.8088 -1.3765 34 1 1.2880 2.5489 -2.1515 35 1 -0.8357 4.0065 -0.5099 36 1 -0.6279 4.0928 -2.2772 37 1 0.4176 6.0431 -1.1049 38 1 1.6166 5.0686 -1.9899 39 1 2.4629 5.6114 0.2622 40 1 1.0074 4.8971 0.9971 41 1 0.7684 -1.8473 -1.5478 42 1 2.4870 -2.0811 -2.0073 43 1 2.7281 -3.9947 -0.5626 44 1 1.0513 -4.2099 -1.1618 45 1 2.5976 -4.7229 1.5370 46 1 1.3556 -4.1898 2.6953 47 1 1.4792 -6.8818 2.6998 48 1 -0.4364 -10.9647 2.5264 49 1 2.7431 -2.3242 1.8136 50 1 1.1437 -1.5347 1.8761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713996402.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:51 Heat of formation + Delta-G solvation = -93.969221 kcal Electronic energy + Delta-G solvation = -30178.627619 eV Core-core repulsion = 26013.476117 eV Total energy + Delta-G solvation = -4165.151502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.91608 -39.53428 -38.58484 -37.58393 -35.48823 -34.05866 -33.88925 -32.32253 -31.67265 -30.94448 -28.71200 -27.36521 -26.89436 -25.65134 -24.32598 -23.95061 -21.44620 -21.25429 -20.72588 -19.39707 -19.33822 -18.34298 -17.72691 -17.02092 -16.41715 -16.19482 -15.85128 -15.58991 -15.43024 -14.97113 -14.82971 -14.66793 -14.51253 -14.28255 -13.95508 -13.44029 -13.37410 -13.14623 -13.12761 -12.79881 -12.66831 -12.53513 -12.41913 -12.06175 -11.98937 -11.91569 -11.79363 -11.61831 -11.58215 -11.47102 -11.25252 -11.00996 -10.87202 -10.72504 -10.59486 -9.97817 -9.97166 -9.76042 -9.55422 -8.90198 -8.60707 -8.18261 -8.09474 -6.30934 -3.82217 2.33267 2.42123 3.02625 3.06919 3.15169 3.52328 3.74495 3.95692 4.07748 4.10594 4.29816 4.33074 4.46783 4.48908 4.53187 4.62541 4.69623 4.77952 4.88387 4.96547 5.04461 5.12424 5.20583 5.21585 5.23194 5.27712 5.28933 5.32066 5.42117 5.49012 5.53934 5.56878 5.62893 5.66943 5.71163 5.75230 5.78459 5.86297 5.93099 6.07188 6.29086 6.32339 6.69779 6.99218 7.05539 7.14988 7.58597 7.92775 8.14547 8.60670 8.95645 9.42939 9.84162 10.82206 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031605 B = 0.001974 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.717785 B =14184.218072 C =14468.638599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.601 5.601 3 C 0.521 3.479 4 O -0.522 6.522 5 C 0.077 3.923 6 H 0.084 0.916 7 C -0.154 4.154 8 C -0.121 4.121 9 C -0.159 4.159 10 C 0.059 3.941 11 O -0.355 6.355 12 C 0.133 3.867 13 H 0.106 0.894 14 C -0.131 4.131 15 C 0.041 3.959 16 N -0.489 5.489 17 C 0.033 3.967 18 C 0.455 3.545 19 O -0.559 6.559 20 N -0.593 5.593 21 C -0.303 4.303 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.024 3.976 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.042 0.958 44 H 0.103 0.897 45 H 0.052 0.948 46 H 0.089 0.911 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.051 0.949 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 28.773 -3.210 29.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.336 5.336 3 C 0.308 3.692 4 O -0.397 6.397 5 C 0.016 3.984 6 H 0.101 0.899 7 C -0.191 4.191 8 C -0.158 4.158 9 C -0.197 4.197 10 C -0.017 4.017 11 O -0.273 6.273 12 C 0.029 3.971 13 H 0.124 0.876 14 C -0.170 4.170 15 C -0.087 4.087 16 N -0.214 5.214 17 C -0.099 4.099 18 C 0.240 3.760 19 O -0.440 6.440 20 N -0.233 5.233 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.105 4.105 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.061 0.939 44 H 0.121 0.879 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.069 0.931 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.013 28.615 -3.762 29.018 hybrid contribution 1.441 -0.378 1.278 1.963 sum 4.454 28.238 -2.484 28.695 Atomic orbital electron populations 1.22015 0.79081 1.04082 1.02302 1.47772 1.07215 1.05104 1.73494 1.20175 0.87925 0.84671 0.76444 1.90711 1.13713 1.86951 1.48280 1.21863 0.91079 0.86719 0.98726 0.89888 1.22300 1.00239 0.99172 0.97421 1.21587 0.97644 0.93744 1.02827 1.22227 0.98871 0.99257 0.99346 1.22666 0.97773 0.84939 0.96368 1.88064 1.31725 1.13257 1.94298 1.21997 0.97683 0.82210 0.95213 0.87555 1.22882 1.02562 0.94695 0.96866 1.23285 0.98987 0.96290 0.90144 1.64484 1.54089 1.00863 1.01920 1.22111 0.97829 0.91941 0.97997 1.19583 0.87076 0.83551 0.85742 1.90541 1.38379 1.83213 1.31877 1.42213 1.36950 1.11413 1.32681 1.19415 1.17605 0.87727 1.18458 0.86285 1.25033 0.97684 0.95347 0.98142 1.69620 1.39253 1.02376 1.40970 0.86677 0.81351 0.78524 0.82853 1.19629 1.20214 1.19562 1.23270 0.98488 0.92082 0.96710 0.91994 0.89021 0.91226 0.89354 0.90408 0.91442 0.90837 0.90615 0.90821 0.88347 0.92983 0.89944 0.90676 0.93947 0.87911 0.92961 0.89248 0.79764 0.91644 0.93064 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 7.51 59.84 0.45 0.97 16 2 N -0.60 -6.23 2.77 -172.38 -0.48 -6.70 16 3 C 0.52 6.28 7.10 -10.98 -0.08 6.21 16 4 O -0.52 -8.51 15.86 -14.30 -0.23 -8.73 16 5 C 0.08 0.71 2.24 -27.83 -0.06 0.64 16 6 H 0.08 0.60 7.13 -51.93 -0.37 0.23 16 7 C -0.15 -1.06 5.12 -26.59 -0.14 -1.20 16 8 C -0.12 -0.63 6.03 -26.55 -0.16 -0.79 16 9 C -0.16 -0.87 6.14 -26.59 -0.16 -1.03 16 10 C 0.06 0.40 6.84 37.21 0.25 0.66 16 11 O -0.36 -3.90 9.94 -55.09 -0.55 -4.45 16 12 C 0.13 1.54 3.39 -66.57 -0.23 1.32 16 13 H 0.11 1.37 6.97 -51.93 -0.36 1.01 16 14 C -0.13 -1.52 6.65 -24.87 -0.17 -1.69 16 15 C 0.04 0.59 5.93 -1.90 -0.01 0.58 16 16 N -0.49 -7.43 4.91 -231.89 -1.14 -8.56 16 17 C 0.03 0.54 5.19 -4.97 -0.03 0.52 16 18 C 0.46 10.13 7.61 -10.98 -0.08 10.05 16 19 O -0.56 -14.55 14.64 5.55 0.08 -14.47 16 20 N -0.59 -13.98 5.09 -10.96 -0.06 -14.03 16 21 C -0.30 -8.50 10.16 -14.93 -0.15 -8.66 16 22 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.66 13.96 55.50 0.77 -24.89 16 25 Si 0.88 19.33 27.74 -169.99 -4.71 14.62 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 29 C 0.02 0.29 5.82 -2.76 -0.02 0.27 16 30 H 0.06 0.41 6.80 -51.93 -0.35 0.06 16 31 H 0.09 0.83 6.98 -51.93 -0.36 0.47 16 32 H 0.07 0.39 6.05 -51.93 -0.31 0.07 16 33 H 0.09 0.50 5.17 -51.93 -0.27 0.23 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.93 6.84 -51.93 -0.36 0.57 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.04 0.59 7.81 -51.93 -0.41 0.19 16 44 H 0.10 1.78 7.10 -51.93 -0.37 1.41 16 45 H 0.05 0.77 7.83 -51.93 -0.41 0.36 16 46 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 47 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 48 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.05 0.60 7.77 -51.93 -0.40 0.19 16 50 H 0.08 0.98 7.11 -51.93 -0.37 0.61 16 LS Contribution 385.13 15.07 5.80 5.80 Total: -1.00 -35.20 385.13 -9.10 -44.31 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.93 Total: 8.24 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -0.67 Total: 8.87 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.90 Total: -54.19 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.69 Total: -27.65 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.20 -9.10 -44.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713996402.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.664 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds