Wall clock time and date at job start Sat Apr 11 2020 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46487 * 1 3 3 C 1.34777 * 120.00484 * 2 1 4 4 O 1.21279 * 120.00446 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.99706 * 0.02562 * 3 2 1 6 6 H 1.09000 * 109.49068 * 55.02483 * 5 3 2 7 7 C 1.53094 * 109.47688 * 294.99900 * 5 3 2 8 8 C 1.53183 * 109.15859 * 182.40894 * 7 5 3 9 9 C 1.53176 * 109.03838 * 56.98139 * 8 7 5 10 10 C 1.53093 * 109.16348 * 303.01796 * 9 8 7 11 11 O 1.42902 * 109.48140 * 175.04535 * 5 3 2 12 12 C 1.46503 * 120.00214 * 180.02562 * 2 1 3 13 13 H 1.08999 * 110.27968 * 177.90605 * 12 2 1 14 14 C 1.54606 * 110.30682 * 55.71346 * 12 2 1 15 15 C 1.54935 * 102.92016 * 219.13069 * 14 12 2 16 16 N 1.48533 * 103.22834 * 37.41378 * 15 14 12 17 17 C 1.46900 * 110.99752 * 200.27983 * 16 15 14 18 18 C 1.50705 * 109.47127 * 287.39446 * 17 16 15 19 19 O 1.21288 * 120.00061 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00014 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99856 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00233 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99744 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99778 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00220 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46974 * 90.00460 * 25 23 21 27 27 H 1.48501 * 109.47465 * 210.00601 * 25 23 21 28 28 H 1.48501 * 109.47352 * 330.00670 * 25 23 21 29 29 C 1.47901 * 105.81955 * 320.79260 * 16 15 14 30 30 H 1.09005 * 109.47582 * 89.99530 * 1 2 3 31 31 H 1.09004 * 109.47468 * 210.00205 * 1 2 3 32 32 H 1.09001 * 109.47191 * 329.99937 * 1 2 3 33 33 H 1.08997 * 109.52488 * 62.50980 * 7 5 3 34 34 H 1.08995 * 109.52127 * 302.30966 * 7 5 3 35 35 H 1.09002 * 109.54436 * 297.11028 * 8 7 5 36 36 H 1.09003 * 109.54353 * 176.84876 * 8 7 5 37 37 H 1.09004 * 109.52469 * 183.11228 * 9 8 7 38 38 H 1.08998 * 109.57356 * 62.95334 * 9 8 7 39 39 H 1.09002 * 109.48198 * 177.59219 * 10 9 8 40 40 H 1.08999 * 109.48029 * 297.61833 * 10 9 8 41 41 H 1.09005 * 110.71924 * 337.48765 * 14 12 2 42 42 H 1.08994 * 110.72279 * 100.76984 * 14 12 2 43 43 H 1.08999 * 110.66567 * 278.97699 * 15 14 12 44 44 H 1.09003 * 110.66522 * 155.85007 * 15 14 12 45 45 H 1.08995 * 109.47385 * 47.39703 * 17 16 15 46 46 H 1.09007 * 109.47134 * 167.40128 * 17 16 15 47 47 H 0.97000 * 120.00396 * 359.97438 * 20 18 17 48 48 H 0.97006 * 120.00362 * 179.97438 * 24 23 21 49 49 H 1.09004 * 109.91746 * 265.97524 * 29 16 15 50 50 H 1.09001 * 110.08099 * 144.77925 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3516 1.1671 0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.6938 2.4926 0.8428 7 6 0.6014 2.6097 -1.3072 8 6 -0.1131 3.9645 -1.3250 9 6 0.9234 5.0785 -1.1488 10 6 1.6949 4.8457 0.1528 11 8 2.3095 3.5560 0.1168 12 6 2.1974 -1.2687 -0.0006 13 1 3.2712 -1.0850 -0.0378 14 6 1.7584 -2.1413 -1.1990 15 6 1.7257 -3.5678 -0.5953 16 7 1.2062 -3.3439 0.7781 17 6 1.5444 -4.4698 1.6589 18 6 0.6962 -5.6622 1.2983 19 8 -0.1103 -5.5820 0.3959 20 7 0.8339 -6.8175 1.9784 21 6 0.0626 -7.9024 1.6499 22 1 -0.6555 -7.8310 0.8464 23 6 0.2042 -9.0934 2.3515 24 7 -0.5354 -10.1331 2.0370 25 14 1.4458 -9.2167 3.7416 26 1 0.7973 -8.8295 5.0202 27 1 1.9410 -10.6132 3.8408 28 1 2.5862 -8.3053 3.4691 29 6 1.8393 -2.0932 1.2497 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 -0.1347 1.8088 -1.3765 34 1 1.2880 2.5489 -2.1515 35 1 -0.8357 4.0065 -0.5099 36 1 -0.6279 4.0928 -2.2772 37 1 0.4176 6.0431 -1.1049 38 1 1.6166 5.0686 -1.9899 39 1 2.4629 5.6114 0.2622 40 1 1.0074 4.8971 0.9971 41 1 0.7684 -1.8473 -1.5478 42 1 2.4870 -2.0811 -2.0073 43 1 2.7281 -3.9947 -0.5626 44 1 1.0513 -4.2099 -1.1618 45 1 2.5976 -4.7229 1.5370 46 1 1.3556 -4.1898 2.6953 47 1 1.4792 -6.8818 2.6998 48 1 -0.4364 -10.9647 2.5264 49 1 2.7431 -2.3242 1.8136 50 1 1.1437 -1.5347 1.8761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713996402.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:50 Heat of formation + Delta-G solvation = -120.685418 kcal Electronic energy + Delta-G solvation = -30179.786120 eV Core-core repulsion = 26013.476117 eV Total energy + Delta-G solvation = -4166.310004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.75121 -40.65736 -39.80342 -38.83973 -36.49786 -35.88290 -34.58329 -33.75668 -33.13082 -31.86690 -29.70374 -28.54480 -27.84425 -26.54781 -25.64566 -24.78445 -22.46382 -22.27239 -21.25926 -21.23012 -20.24441 -20.20876 -18.57442 -17.85932 -17.75991 -17.10124 -16.86622 -16.75155 -16.47542 -16.17015 -16.10493 -15.64403 -15.38211 -15.10132 -15.08441 -14.81078 -14.51033 -14.36580 -14.26563 -13.98052 -13.66703 -13.62594 -13.34140 -13.15608 -13.08792 -12.98843 -12.82733 -12.66475 -12.48935 -12.41029 -12.21861 -12.11454 -11.97634 -11.92908 -11.76331 -11.47482 -11.35667 -10.70564 -10.48130 -10.39859 -10.22232 -9.73794 -9.36145 -8.39843 -6.00056 1.30666 1.35805 1.44300 1.45194 1.63951 1.98338 2.23533 2.62703 2.90136 3.15582 3.24646 3.39343 3.60345 3.67228 3.76449 3.86878 3.97951 4.01822 4.03020 4.16181 4.19171 4.25336 4.28743 4.35104 4.37871 4.46381 4.47197 4.60478 4.63529 4.69340 4.76393 4.78326 4.85814 4.91207 4.94557 5.03976 5.06359 5.11209 5.11714 5.17590 5.36261 5.45959 5.53878 5.84825 5.88522 6.00554 6.09036 6.34407 6.61500 6.90543 7.05398 7.42134 7.99370 8.77708 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031605 B = 0.001974 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.717785 B =14184.218072 C =14468.638599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.595 5.595 3 C 0.516 3.484 4 O -0.573 6.573 5 C 0.079 3.921 6 H 0.108 0.892 7 C -0.149 4.149 8 C -0.118 4.118 9 C -0.157 4.157 10 C 0.052 3.948 11 O -0.393 6.393 12 C 0.136 3.864 13 H 0.094 0.906 14 C -0.119 4.119 15 C 0.040 3.960 16 N -0.507 5.507 17 C 0.044 3.956 18 C 0.455 3.545 19 O -0.603 6.603 20 N -0.594 5.594 21 C -0.324 4.324 22 H 0.057 0.943 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.963 3.037 26 H -0.257 1.257 27 H -0.276 1.276 28 H -0.233 1.233 29 C 0.031 3.969 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.120 0.880 47 H 0.388 0.612 48 H 0.278 0.722 49 H 0.063 0.937 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.174 31.201 -1.217 31.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.328 5.328 3 C 0.305 3.695 4 O -0.452 6.452 5 C 0.018 3.982 6 H 0.125 0.875 7 C -0.187 4.187 8 C -0.155 4.155 9 C -0.195 4.195 10 C -0.024 4.024 11 O -0.312 6.312 12 C 0.032 3.968 13 H 0.113 0.887 14 C -0.158 4.158 15 C -0.088 4.088 16 N -0.231 5.231 17 C -0.088 4.088 18 C 0.242 3.758 19 O -0.487 6.487 20 N -0.237 5.237 21 C -0.453 4.453 22 H 0.075 0.925 23 C -0.214 4.214 24 N -0.576 5.576 25 Si 0.784 3.216 26 H -0.181 1.181 27 H -0.202 1.202 28 H -0.157 1.157 29 C -0.097 4.097 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.138 0.862 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.081 0.919 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.823 31.077 -1.774 31.362 hybrid contribution 1.079 -1.087 0.537 1.623 sum 4.902 29.991 -1.236 30.414 Atomic orbital electron populations 1.22220 0.77212 1.04913 1.03472 1.47809 1.08240 1.04291 1.72475 1.20808 0.87523 0.85908 0.75298 1.90681 1.15976 1.87704 1.50856 1.21957 0.90694 0.84830 1.00678 0.87477 1.22291 0.99947 1.01005 0.95426 1.21618 0.97582 0.92255 1.04091 1.22219 0.98712 1.00523 0.98050 1.22894 0.98383 0.83383 0.97713 1.88015 1.33620 1.14896 1.94635 1.21831 0.97264 0.82773 0.94921 0.88742 1.22781 1.03106 0.92817 0.97076 1.23177 0.98148 0.97406 0.90035 1.64407 1.55245 1.01519 1.01967 1.22037 0.97561 0.89573 0.99603 1.20782 0.86375 0.84509 0.84093 1.90528 1.40339 1.84158 1.33634 1.42047 1.37163 1.10744 1.33709 1.18988 1.18179 0.90198 1.17982 0.92519 1.26082 1.00049 0.94025 1.01283 1.69801 1.41533 1.03331 1.42913 0.85385 0.78867 0.79225 0.78173 1.18146 1.20169 1.15668 1.23248 0.99007 0.90536 0.96918 0.90684 0.90097 0.88471 0.87843 0.92396 0.89715 0.89839 0.88566 0.92236 0.87961 0.91321 0.89609 0.89714 0.93397 0.91498 0.90329 0.86226 0.77642 0.91228 0.91854 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 7.51 127.77 0.96 1.77 16 2 N -0.60 -11.30 2.77 -817.68 -2.27 -13.57 16 3 C 0.52 11.91 7.10 87.66 0.62 12.54 16 4 O -0.57 -18.81 15.86 15.96 0.25 -18.56 16 5 C 0.08 1.30 2.24 29.88 0.07 1.37 16 6 H 0.11 1.20 7.13 -2.39 -0.02 1.19 16 7 C -0.15 -1.74 5.12 30.69 0.16 -1.59 16 8 C -0.12 -0.88 6.03 30.71 0.19 -0.70 16 9 C -0.16 -1.38 6.14 30.68 0.19 -1.20 16 10 C 0.05 0.62 6.84 72.01 0.49 1.11 16 11 O -0.39 -8.26 9.94 -129.99 -1.29 -9.55 16 12 C 0.14 2.98 3.39 45.87 0.16 3.13 16 13 H 0.09 2.36 6.97 -2.39 -0.02 2.34 16 14 C -0.12 -2.65 6.65 31.80 0.21 -2.44 16 15 C 0.04 1.16 5.93 86.65 0.51 1.67 16 16 N -0.51 -14.59 4.91 -887.56 -4.35 -18.94 16 17 C 0.04 1.33 5.19 85.56 0.44 1.77 16 18 C 0.45 20.21 7.61 87.66 0.67 20.87 16 19 O -0.60 -32.59 14.64 -3.06 -0.04 -32.64 16 20 N -0.59 -27.80 5.09 -306.98 -1.56 -29.37 16 21 C -0.32 -18.86 10.16 84.04 0.85 -18.01 16 22 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 23 C -0.02 -0.88 5.50 84.93 0.47 -0.42 16 24 N -0.93 -56.27 13.96 21.66 0.30 -55.97 16 25 Si 0.96 38.81 27.74 68.60 1.90 40.71 16 26 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 27 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 29 C 0.03 0.69 5.82 86.44 0.50 1.19 16 30 H 0.07 0.80 6.80 -2.38 -0.02 0.78 16 31 H 0.08 1.28 6.98 -2.38 -0.02 1.26 16 32 H 0.10 0.72 6.05 -2.39 -0.01 0.70 16 33 H 0.10 0.85 5.17 -2.39 -0.01 0.84 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 35 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.09 1.85 6.84 -2.38 -0.02 1.83 16 42 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.05 1.30 7.81 -2.39 -0.02 1.28 16 44 H 0.07 2.41 7.10 -2.39 -0.02 2.39 16 45 H 0.08 2.03 7.83 -2.39 -0.02 2.01 16 46 H 0.12 2.97 8.08 -2.38 -0.02 2.95 16 47 H 0.39 15.10 5.76 -92.71 -0.53 14.56 16 48 H 0.28 15.33 8.31 -92.70 -0.77 14.56 16 49 H 0.06 1.27 7.77 -2.38 -0.02 1.25 16 50 H 0.09 1.91 7.11 -2.39 -0.02 1.89 16 Total: -1.00 -83.51 385.13 -0.21 -83.72 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: 0.36 Total: 33.09 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 6.49 Total: 21.08 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -7.88 Total: -117.85 kcal Atomic # 8 Polarization: -59.66 SS G_CDS: -1.08 Total: -60.75 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.90 Total: 40.71 kcal Total: -83.51 -0.21 -83.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713996402.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.968 kcal (2) G-P(sol) polarization free energy of solvation -83.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds