Wall clock time and date at job start Sat Apr 11 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46505 * 120.00297 * 2 1 4 4 C 1.52996 * 109.46902 * 270.00212 * 3 2 1 5 5 H 1.09000 * 109.47456 * 304.99271 * 4 3 2 6 6 O 1.42894 * 109.47339 * 65.00015 * 4 3 2 7 7 C 1.53006 * 109.46577 * 184.99832 * 4 3 2 8 8 N 1.46907 * 109.46490 * 180.02562 * 7 4 3 9 9 C 1.46907 * 110.99631 * 180.02562 * 8 7 4 10 10 C 1.50696 * 109.47059 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00251 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99944 * 179.97438 * 10 9 8 13 13 C 1.37095 * 119.99744 * 180.02562 * 12 10 9 14 14 H 1.07994 * 120.00148 * 359.97438 * 13 12 10 15 15 C 1.38950 * 119.99715 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00132 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99878 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47035 * 90.00689 * 17 15 13 19 19 H 1.48506 * 109.46972 * 210.00285 * 17 15 13 20 20 H 1.48494 * 109.47372 * 330.00096 * 17 15 13 21 21 C 1.34780 * 119.99752 * 180.02562 * 2 1 3 22 22 O 1.21284 * 119.99721 * 180.02562 * 21 2 1 23 23 C 1.50698 * 120.00350 * 359.97438 * 21 2 1 24 24 H 1.08995 * 109.80942 * 60.52515 * 23 21 2 25 25 C 1.53026 * 109.63852 * 300.00095 * 23 21 2 26 26 C 1.50072 * 110.14449 * 190.87710 * 25 23 21 27 27 C 1.29446 * 124.07576 * 17.13099 * 26 25 23 28 28 C 1.50061 * 124.07264 * 359.53010 * 27 26 25 29 29 C 1.53019 * 110.15324 * 17.13191 * 28 27 26 30 30 H 1.09001 * 109.47205 * 269.99781 * 1 2 3 31 31 H 1.08997 * 109.47255 * 29.99917 * 1 2 3 32 32 H 1.09002 * 109.47655 * 149.99776 * 1 2 3 33 33 H 1.08993 * 109.46892 * 30.00277 * 3 2 1 34 34 H 1.08996 * 109.46998 * 150.00261 * 3 2 1 35 35 H 0.96701 * 114.00393 * 59.99751 * 6 4 3 36 36 H 1.08994 * 109.47100 * 299.99598 * 7 4 3 37 37 H 1.08995 * 109.47376 * 60.00254 * 7 4 3 38 38 H 1.00902 * 111.00089 * 303.94684 * 8 7 4 39 39 H 1.08999 * 109.46924 * 299.99961 * 9 8 7 40 40 H 1.08998 * 109.46865 * 59.99921 * 9 8 7 41 41 H 0.97000 * 119.99840 * 359.97438 * 12 10 9 42 42 H 0.97000 * 120.00250 * 179.97438 * 16 15 13 43 43 H 1.09000 * 109.35986 * 311.08315 * 25 23 21 44 44 H 1.09002 * 109.36098 * 70.67418 * 25 23 21 45 45 H 1.08000 * 117.96229 * 197.11256 * 26 25 23 46 46 H 1.07999 * 117.96106 * 179.50910 * 27 26 25 47 47 H 1.08998 * 109.35728 * 256.92105 * 28 27 26 48 48 H 1.09002 * 109.35240 * 137.34040 * 28 27 26 49 49 H 1.08994 * 109.65036 * 190.87408 * 29 28 27 50 50 H 1.09005 * 109.64113 * 70.24685 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9642 0.9131 -1.9816 6 8 1.2060 1.9935 -2.0813 7 6 3.3238 2.9681 -1.4442 8 7 3.5681 3.3924 -2.8293 9 6 4.4039 4.5999 -2.8702 10 6 4.6320 5.0045 -4.3038 11 8 4.1465 4.3512 -5.2030 12 7 5.3755 6.0925 -4.5868 13 6 5.5826 6.4609 -5.8910 14 1 5.1503 5.8792 -6.6916 15 6 6.3495 7.5823 -6.1828 16 7 6.5484 7.9352 -7.4329 17 14 7.0979 8.5881 -4.7979 18 1 8.4461 8.0572 -4.4732 19 1 7.2135 10.0064 -5.2228 20 1 6.2289 8.5005 -3.5969 21 6 2.1388 -1.1673 -0.0005 22 8 3.3516 -1.1672 -0.0001 23 6 1.3853 -2.4723 -0.0005 24 1 0.7633 -2.5398 -0.8930 25 6 0.5045 -2.5577 1.2479 26 6 -0.0438 -3.9464 1.3996 27 6 0.4341 -4.9852 0.7928 28 6 1.5968 -4.9443 -0.1549 29 6 2.3784 -3.6411 0.0254 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 1.6085 2.0283 0.5138 34 1 3.1499 1.1383 0.5138 35 1 0.6955 2.6950 -1.6542 36 1 2.8121 3.7653 -0.9052 37 1 4.2746 2.7521 -0.9570 38 1 3.9834 2.6472 -3.3679 39 1 3.9003 5.4085 -2.3405 40 1 5.3623 4.3946 -2.3933 41 1 5.7635 6.6152 -3.8677 42 1 7.0835 8.7182 -7.6365 43 1 1.0980 -2.3056 2.1268 44 1 -0.3207 -1.8514 1.1570 45 1 -0.8896 -4.0880 2.0561 46 1 -0.0329 -5.9407 0.9806 47 1 1.2302 -5.0069 -1.1795 48 1 2.2546 -5.7905 0.0436 49 1 3.0970 -3.5294 -0.7864 50 1 2.9010 -3.6567 0.9819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717910482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:43 Heat of formation + Delta-G solvation = -100.338675 kcal Electronic energy + Delta-G solvation = -29182.167592 eV Core-core repulsion = 25016.739890 eV Total energy + Delta-G solvation = -4165.427703 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83749 -38.73895 -38.28385 -37.53423 -35.66852 -34.77585 -33.81413 -32.08879 -31.63990 -31.26851 -30.32993 -27.82892 -26.85916 -25.24993 -23.97512 -23.44544 -22.58953 -21.81446 -19.59402 -19.35899 -18.42615 -18.33974 -17.52415 -17.03079 -16.49758 -16.25086 -16.07078 -15.73366 -15.30479 -15.00027 -14.76893 -14.51141 -14.41737 -14.09770 -13.75887 -13.66654 -13.47047 -13.33446 -13.16800 -13.14272 -12.82086 -12.67053 -12.59571 -12.45454 -12.11014 -12.01804 -11.83378 -11.63646 -11.40181 -11.18651 -11.14537 -11.12968 -10.77520 -10.58403 -10.44432 -9.95810 -9.90639 -9.55102 -9.43714 -8.87851 -8.54165 -8.17100 -8.09982 -6.28856 -3.80180 1.84037 2.31852 2.61148 3.03814 3.07934 3.16038 3.76867 3.95952 4.01378 4.11983 4.20688 4.34693 4.38981 4.56349 4.70741 4.75261 4.77700 4.78838 4.87209 4.90927 4.99190 5.00627 5.05446 5.10770 5.17636 5.22090 5.27482 5.31894 5.36954 5.44630 5.49352 5.51033 5.54562 5.63953 5.81657 5.81894 5.86635 5.90398 5.94905 6.13887 6.19760 6.48709 7.00400 7.08230 7.52287 7.60712 7.66940 7.86362 8.17092 8.62410 8.97522 9.44807 9.85667 10.84363 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028751 B = 0.001687 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.645591 B =16590.912881 C =16796.759389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.607 5.607 3 C 0.084 3.916 4 C 0.098 3.902 5 H 0.100 0.900 6 O -0.540 6.540 7 C 0.029 3.971 8 N -0.658 5.658 9 C 0.048 3.952 10 C 0.450 3.550 11 O -0.562 6.562 12 N -0.592 5.592 13 C -0.305 4.305 14 H 0.120 0.880 15 C 0.041 3.959 16 N -0.882 5.882 17 Si 0.880 3.120 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.270 1.270 21 C 0.518 3.482 22 O -0.537 6.537 23 C -0.106 4.106 24 H 0.100 0.900 25 C -0.089 4.089 26 C -0.157 4.157 27 C -0.152 4.152 28 C -0.094 4.094 29 C -0.100 4.100 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.368 0.632 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.352 0.648 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.154 -20.506 24.280 34.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.340 5.340 3 C -0.040 4.040 4 C 0.037 3.963 5 H 0.117 0.883 6 O -0.344 6.344 7 C -0.102 4.102 8 N -0.291 5.291 9 C -0.085 4.085 10 C 0.236 3.764 11 O -0.443 6.443 12 N -0.231 5.231 13 C -0.433 4.433 14 H 0.137 0.863 15 C -0.162 4.162 16 N -0.522 5.522 17 Si 0.707 3.293 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.195 1.195 21 C 0.306 3.694 22 O -0.414 6.414 23 C -0.127 4.127 24 H 0.118 0.882 25 C -0.126 4.126 26 C -0.176 4.176 27 C -0.170 4.170 28 C -0.131 4.131 29 C -0.138 4.138 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.215 0.785 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.172 0.828 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.132 -20.928 23.050 34.191 hybrid contribution 1.265 1.137 1.676 2.388 sum -12.867 -19.791 24.726 34.185 Atomic orbital electron populations 1.22004 0.79203 1.04090 1.01296 1.47681 1.07153 1.05580 1.73572 1.22186 0.98667 0.85316 0.97793 1.22287 0.85481 0.96316 0.92256 0.88256 1.86677 1.31622 1.59002 1.57116 1.22606 0.98897 0.97300 0.91376 1.59985 1.51607 1.07597 1.09864 1.21724 0.95745 0.94359 0.96690 1.19704 0.83432 0.83449 0.89839 1.90578 1.51939 1.54233 1.47575 1.42205 1.47242 1.25524 1.08165 1.19441 1.30292 1.10815 0.82790 0.86285 1.25036 0.97528 0.97144 0.96474 1.69623 1.39135 1.26433 1.17012 0.86664 0.80019 0.80806 0.81842 1.19688 1.20177 1.19517 1.20689 0.87943 0.85264 0.75488 1.90710 1.13944 1.87325 1.49376 1.21374 0.98108 0.92659 1.00559 0.88157 1.20651 0.99040 0.96015 0.96929 1.21973 1.00447 0.94183 1.00950 1.22121 0.98016 0.98389 0.98517 1.20514 0.95597 0.98090 0.98916 1.21431 0.96781 0.91969 1.03589 0.92559 0.90236 0.90742 0.89986 0.88951 0.78533 0.90742 0.94505 0.82818 0.89580 0.93856 0.79729 0.91642 0.90547 0.89657 0.87603 0.87838 0.90591 0.90583 0.90501 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.40 8.61 59.84 0.52 0.91 16 2 N -0.61 -4.97 2.84 -181.58 -0.52 -5.48 16 3 C 0.08 0.69 5.07 -4.04 -0.02 0.67 16 4 C 0.10 1.04 3.42 -26.73 -0.09 0.95 16 5 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 6 O -0.54 -6.07 12.03 -35.23 -0.42 -6.50 16 7 C 0.03 0.33 5.35 -3.82 -0.02 0.31 16 8 N -0.66 -10.53 5.99 -115.05 -0.69 -11.22 16 9 C 0.05 0.81 6.17 -4.97 -0.03 0.77 16 10 C 0.45 10.51 7.82 -10.98 -0.09 10.42 16 11 O -0.56 -15.61 15.78 5.55 0.09 -15.52 16 12 N -0.59 -14.38 5.09 -10.97 -0.06 -14.44 16 13 C -0.30 -8.79 10.16 -14.93 -0.15 -8.94 16 14 H 0.12 3.93 7.39 -52.49 -0.39 3.54 16 15 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 16 N -0.88 -26.09 13.96 55.50 0.77 -25.31 16 17 Si 0.88 19.59 27.74 -169.99 -4.71 14.87 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 20 H -0.27 -5.46 6.52 56.52 0.37 -5.10 16 21 C 0.52 5.28 7.06 -10.99 -0.08 5.20 16 22 O -0.54 -7.51 15.48 5.55 0.09 -7.42 16 23 C -0.11 -0.80 1.76 -91.56 -0.16 -0.96 16 24 H 0.10 0.70 7.42 -51.93 -0.39 0.31 16 25 C -0.09 -0.51 4.93 -28.17 -0.14 -0.65 16 26 C -0.16 -0.88 9.80 -35.90 -0.35 -1.23 16 27 C -0.15 -0.88 9.80 -35.90 -0.35 -1.24 16 28 C -0.09 -0.58 6.11 -28.18 -0.17 -0.75 16 29 C -0.10 -0.80 4.70 -26.52 -0.12 -0.93 16 30 H 0.06 0.20 7.21 -51.93 -0.37 -0.18 16 31 H 0.08 0.39 7.11 -51.93 -0.37 0.02 16 32 H 0.07 0.35 5.90 -51.93 -0.31 0.04 16 33 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 34 H 0.09 0.87 7.42 -51.93 -0.39 0.48 16 35 H 0.37 2.84 9.04 45.56 0.41 3.26 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.35 6.14 8.43 -39.29 -0.33 5.81 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.37 7.87 5.76 -40.82 -0.24 7.63 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 44 H 0.09 0.35 4.92 -51.93 -0.26 0.10 16 45 H 0.11 0.46 8.06 -52.49 -0.42 0.04 16 46 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.08 0.71 7.89 -51.93 -0.41 0.30 16 50 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 LS Contribution 400.08 15.07 6.03 6.03 Total: -1.00 -36.64 400.08 -8.04 -44.68 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -7.26 Total: 14.72 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.36 Total: 5.59 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.49 Total: -56.45 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.25 Total: -29.44 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.71 Total: 14.87 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.64 -8.04 -44.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717910482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.656 kcal (2) G-P(sol) polarization free energy of solvation -36.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds