Wall clock time and date at job start Sat Apr 11 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46505 * 120.00297 * 2 1 4 4 C 1.52996 * 109.46902 * 270.00212 * 3 2 1 5 5 H 1.09000 * 109.47456 * 304.99271 * 4 3 2 6 6 O 1.42894 * 109.47339 * 65.00015 * 4 3 2 7 7 C 1.53006 * 109.46577 * 184.99832 * 4 3 2 8 8 N 1.46907 * 109.46490 * 180.02562 * 7 4 3 9 9 C 1.46907 * 110.99631 * 180.02562 * 8 7 4 10 10 C 1.50696 * 109.47059 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00251 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99944 * 179.97438 * 10 9 8 13 13 C 1.37095 * 119.99744 * 180.02562 * 12 10 9 14 14 H 1.07994 * 120.00148 * 359.97438 * 13 12 10 15 15 C 1.38950 * 119.99715 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00132 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99878 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47035 * 90.00689 * 17 15 13 19 19 H 1.48506 * 109.46972 * 210.00285 * 17 15 13 20 20 H 1.48494 * 109.47372 * 330.00096 * 17 15 13 21 21 C 1.34780 * 119.99752 * 180.02562 * 2 1 3 22 22 O 1.21284 * 119.99721 * 180.02562 * 21 2 1 23 23 C 1.50698 * 120.00350 * 359.97438 * 21 2 1 24 24 H 1.08995 * 109.80942 * 60.52515 * 23 21 2 25 25 C 1.53026 * 109.63852 * 300.00095 * 23 21 2 26 26 C 1.50072 * 110.14449 * 190.87710 * 25 23 21 27 27 C 1.29446 * 124.07576 * 17.13099 * 26 25 23 28 28 C 1.50061 * 124.07264 * 359.53010 * 27 26 25 29 29 C 1.53019 * 110.15324 * 17.13191 * 28 27 26 30 30 H 1.09001 * 109.47205 * 269.99781 * 1 2 3 31 31 H 1.08997 * 109.47255 * 29.99917 * 1 2 3 32 32 H 1.09002 * 109.47655 * 149.99776 * 1 2 3 33 33 H 1.08993 * 109.46892 * 30.00277 * 3 2 1 34 34 H 1.08996 * 109.46998 * 150.00261 * 3 2 1 35 35 H 0.96701 * 114.00393 * 59.99751 * 6 4 3 36 36 H 1.08994 * 109.47100 * 299.99598 * 7 4 3 37 37 H 1.08995 * 109.47376 * 60.00254 * 7 4 3 38 38 H 1.00902 * 111.00089 * 303.94684 * 8 7 4 39 39 H 1.08999 * 109.46924 * 299.99961 * 9 8 7 40 40 H 1.08998 * 109.46865 * 59.99921 * 9 8 7 41 41 H 0.97000 * 119.99840 * 359.97438 * 12 10 9 42 42 H 0.97000 * 120.00250 * 179.97438 * 16 15 13 43 43 H 1.09000 * 109.35986 * 311.08315 * 25 23 21 44 44 H 1.09002 * 109.36098 * 70.67418 * 25 23 21 45 45 H 1.08000 * 117.96229 * 197.11256 * 26 25 23 46 46 H 1.07999 * 117.96106 * 179.50910 * 27 26 25 47 47 H 1.08998 * 109.35728 * 256.92105 * 28 27 26 48 48 H 1.09002 * 109.35240 * 137.34040 * 28 27 26 49 49 H 1.08994 * 109.65036 * 190.87408 * 29 28 27 50 50 H 1.09005 * 109.64113 * 70.24685 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9642 0.9131 -1.9816 6 8 1.2060 1.9935 -2.0813 7 6 3.3238 2.9681 -1.4442 8 7 3.5681 3.3924 -2.8293 9 6 4.4039 4.5999 -2.8702 10 6 4.6320 5.0045 -4.3038 11 8 4.1465 4.3512 -5.2030 12 7 5.3755 6.0925 -4.5868 13 6 5.5826 6.4609 -5.8910 14 1 5.1503 5.8792 -6.6916 15 6 6.3495 7.5823 -6.1828 16 7 6.5484 7.9352 -7.4329 17 14 7.0979 8.5881 -4.7979 18 1 8.4461 8.0572 -4.4732 19 1 7.2135 10.0064 -5.2228 20 1 6.2289 8.5005 -3.5969 21 6 2.1388 -1.1673 -0.0005 22 8 3.3516 -1.1672 -0.0001 23 6 1.3853 -2.4723 -0.0005 24 1 0.7633 -2.5398 -0.8930 25 6 0.5045 -2.5577 1.2479 26 6 -0.0438 -3.9464 1.3996 27 6 0.4341 -4.9852 0.7928 28 6 1.5968 -4.9443 -0.1549 29 6 2.3784 -3.6411 0.0254 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 1.6085 2.0283 0.5138 34 1 3.1499 1.1383 0.5138 35 1 0.6955 2.6950 -1.6542 36 1 2.8121 3.7653 -0.9052 37 1 4.2746 2.7521 -0.9570 38 1 3.9834 2.6472 -3.3679 39 1 3.9003 5.4085 -2.3405 40 1 5.3623 4.3946 -2.3933 41 1 5.7635 6.6152 -3.8677 42 1 7.0835 8.7182 -7.6365 43 1 1.0980 -2.3056 2.1268 44 1 -0.3207 -1.8514 1.1570 45 1 -0.8896 -4.0880 2.0561 46 1 -0.0329 -5.9407 0.9806 47 1 1.2302 -5.0069 -1.1795 48 1 2.2546 -5.7905 0.0436 49 1 3.0970 -3.5294 -0.7864 50 1 2.9010 -3.6567 0.9819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717910482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:42 Heat of formation + Delta-G solvation = -131.099666 kcal Electronic energy + Delta-G solvation = -29183.501489 eV Core-core repulsion = 25016.739890 eV Total energy + Delta-G solvation = -4166.761599 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52841 -40.34452 -39.22384 -38.33328 -36.58331 -36.09684 -35.58061 -33.76303 -32.69254 -31.80638 -31.16514 -28.95360 -27.60432 -26.63346 -25.02158 -24.27948 -23.37913 -22.65177 -21.30660 -20.30185 -20.25335 -18.93595 -18.28367 -18.00014 -17.43287 -17.27633 -16.99433 -16.88847 -16.60701 -16.15709 -16.03124 -15.52130 -15.21096 -15.09478 -14.87339 -14.64068 -14.54016 -14.44935 -14.19844 -14.05214 -13.88262 -13.67914 -13.32668 -13.27139 -13.21797 -13.04679 -12.95858 -12.73657 -12.50691 -12.42518 -12.06156 -11.98420 -11.95900 -11.67649 -11.53011 -11.33594 -11.26022 -10.66721 -10.45256 -10.26542 -9.86054 -9.54498 -9.32843 -8.42399 -6.03835 1.29487 1.35192 1.42382 1.44362 1.56678 1.93953 1.98418 2.22424 2.69925 3.13724 3.29921 3.41931 3.63484 3.68490 3.81765 3.82849 4.03807 4.10264 4.16934 4.20676 4.28216 4.34153 4.38263 4.39564 4.47853 4.48938 4.50901 4.58353 4.64430 4.69118 4.73964 4.79113 4.87927 4.95428 5.00408 5.04286 5.12131 5.24514 5.30432 5.49794 5.52426 5.77996 5.88078 6.02142 6.06484 6.26250 6.35198 6.58450 6.86554 6.97969 7.13528 7.37926 7.95205 8.75384 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028751 B = 0.001687 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.645591 B =16590.912881 C =16796.759389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.604 5.604 3 C 0.089 3.911 4 C 0.107 3.893 5 H 0.062 0.938 6 O -0.558 6.558 7 C 0.033 3.967 8 N -0.678 5.678 9 C 0.062 3.938 10 C 0.446 3.554 11 O -0.616 6.616 12 N -0.590 5.590 13 C -0.332 4.332 14 H 0.053 0.947 15 C -0.015 4.015 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.258 1.258 19 H -0.274 1.274 20 H -0.229 1.229 21 C 0.509 3.491 22 O -0.586 6.586 23 C -0.102 4.102 24 H 0.108 0.892 25 C -0.084 4.084 26 C -0.159 4.159 27 C -0.163 4.163 28 C -0.092 4.092 29 C -0.100 4.100 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.385 0.615 36 H 0.104 0.896 37 H 0.046 0.954 38 H 0.337 0.663 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.390 0.610 42 H 0.280 0.720 43 H 0.070 0.930 44 H 0.107 0.893 45 H 0.124 0.876 46 H 0.117 0.883 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.054 0.946 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.433 -19.443 28.587 37.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.335 5.335 3 C -0.034 4.034 4 C 0.046 3.954 5 H 0.080 0.920 6 O -0.365 6.365 7 C -0.097 4.097 8 N -0.310 5.310 9 C -0.070 4.070 10 C 0.234 3.766 11 O -0.501 6.501 12 N -0.231 5.231 13 C -0.461 4.461 14 H 0.071 0.929 15 C -0.214 4.214 16 N -0.575 5.575 17 Si 0.787 3.213 18 H -0.182 1.182 19 H -0.199 1.199 20 H -0.153 1.153 21 C 0.298 3.702 22 O -0.466 6.466 23 C -0.123 4.123 24 H 0.126 0.874 25 C -0.121 4.121 26 C -0.176 4.176 27 C -0.180 4.180 28 C -0.129 4.129 29 C -0.138 4.138 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.234 0.766 36 H 0.122 0.878 37 H 0.064 0.936 38 H 0.155 0.845 39 H 0.137 0.863 40 H 0.092 0.908 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.125 0.875 45 H 0.142 0.858 46 H 0.135 0.865 47 H 0.098 0.902 48 H 0.099 0.901 49 H 0.073 0.927 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.469 -19.856 27.402 37.208 hybrid contribution 1.585 0.734 0.213 1.760 sum -13.884 -19.122 27.615 36.346 Atomic orbital electron populations 1.22260 0.77063 1.04784 1.03120 1.47806 1.08511 1.05006 1.72202 1.22146 0.99052 0.86186 0.96060 1.22078 0.85084 0.95091 0.93158 0.92015 1.86645 1.31895 1.59956 1.57999 1.22707 0.99754 0.98296 0.88899 1.60023 1.51379 1.07028 1.12575 1.21659 0.98049 0.95689 0.91585 1.21045 0.81223 0.81931 0.92408 1.90554 1.53584 1.55658 1.50261 1.42015 1.47927 1.26374 1.06830 1.19014 1.31882 1.11525 0.83694 0.92911 1.26153 0.97153 0.97929 1.00162 1.69809 1.39976 1.27354 1.20340 0.85333 0.79660 0.77866 0.78438 1.18239 1.19875 1.15258 1.21199 0.87575 0.86621 0.74788 1.90681 1.16055 1.88076 1.51822 1.21373 0.97958 0.90969 1.01982 0.87441 1.20655 0.99103 0.96962 0.95388 1.22137 1.00777 0.93750 1.00980 1.22232 0.97885 0.99262 0.98670 1.20493 0.95850 0.97021 0.99495 1.21384 0.96852 0.93613 1.01969 0.90032 0.89509 0.90231 0.86311 0.90188 0.76589 0.87827 0.93554 0.84503 0.86257 0.90778 0.77388 0.91099 0.91194 0.87514 0.85836 0.86536 0.90237 0.90093 0.92711 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 8.61 127.77 1.10 1.62 16 2 N -0.60 -9.01 2.84 -846.79 -2.40 -11.41 16 3 C 0.09 1.29 5.07 86.38 0.44 1.73 16 4 C 0.11 2.16 3.42 30.60 0.10 2.26 16 5 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 6 O -0.56 -11.70 12.03 -148.98 -1.79 -13.49 16 7 C 0.03 0.66 5.35 86.30 0.46 1.12 16 8 N -0.68 -20.81 5.99 -517.91 -3.10 -23.91 16 9 C 0.06 1.94 6.17 85.55 0.53 2.47 16 10 C 0.45 20.81 7.82 87.65 0.69 21.49 16 11 O -0.62 -35.73 15.78 -3.06 -0.05 -35.78 16 12 N -0.59 -28.41 5.09 -306.99 -1.56 -29.97 16 13 C -0.33 -19.90 10.16 84.04 0.85 -19.05 16 14 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 15 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 16 N -0.93 -57.11 13.96 21.66 0.30 -56.80 16 17 Si 0.97 39.08 27.74 68.60 1.90 40.98 16 18 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 19 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 20 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 21 C 0.51 10.41 7.06 87.66 0.62 11.03 16 22 O -0.59 -17.24 15.48 -3.04 -0.05 -17.29 16 23 C -0.10 -1.50 1.76 -11.40 -0.02 -1.52 16 24 H 0.11 1.41 7.42 -2.39 -0.02 1.40 16 25 C -0.08 -0.81 4.93 29.66 0.15 -0.66 16 26 C -0.16 -1.42 9.80 27.04 0.27 -1.16 16 27 C -0.16 -1.64 9.80 27.03 0.27 -1.38 16 28 C -0.09 -1.10 6.11 29.65 0.18 -0.92 16 29 C -0.10 -1.69 4.70 30.73 0.14 -1.55 16 30 H 0.08 0.24 7.21 -2.39 -0.02 0.22 16 31 H 0.09 0.57 7.11 -2.39 -0.02 0.55 16 32 H 0.08 0.53 5.90 -2.39 -0.01 0.52 16 33 H 0.12 0.86 8.07 -2.39 -0.02 0.84 16 34 H 0.08 1.41 7.42 -2.39 -0.02 1.39 16 35 H 0.39 4.85 9.04 -74.06 -0.67 4.18 16 36 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.34 11.96 8.43 -89.69 -0.76 11.20 16 39 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.39 15.40 5.76 -92.71 -0.53 14.87 16 42 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 43 H 0.07 0.79 8.10 -2.39 -0.02 0.78 16 44 H 0.11 0.55 4.92 -2.39 -0.01 0.53 16 45 H 0.12 0.70 8.06 -2.91 -0.02 0.68 16 46 H 0.12 0.87 8.06 -2.91 -0.02 0.85 16 47 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.05 1.14 7.89 -2.39 -0.02 1.12 16 50 H 0.06 1.08 8.12 -2.38 -0.02 1.06 16 Total: -1.00 -88.17 400.08 -1.56 -89.73 By element: Atomic # 1 Polarization: 43.90 SS G_CDS: -1.04 Total: 42.85 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 6.24 Total: 15.09 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -6.77 Total: -122.10 kcal Atomic # 8 Polarization: -64.67 SS G_CDS: -1.89 Total: -66.55 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 1.90 Total: 40.98 kcal Total: -88.17 -1.56 -89.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717910482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.372 kcal (2) G-P(sol) polarization free energy of solvation -88.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds