Wall clock time and date at job start Sat Apr 11 2020 05:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99444 * 2 1 4 4 C 1.53005 * 109.47045 * 175.13027 * 3 2 1 5 5 C 1.50704 * 112.84907 * 55.04924 * 4 3 2 6 6 O 1.21279 * 120.00119 * 112.20053 * 5 4 3 7 7 N 1.34781 * 119.99937 * 292.20648 * 5 4 3 8 8 C 1.46499 * 119.99882 * 185.20609 * 7 5 4 9 9 C 1.53000 * 109.47302 * 185.09582 * 8 7 5 10 10 N 1.46903 * 115.54961 * 260.05845 * 9 8 7 11 11 C 1.46902 * 110.99728 * 294.00457 * 10 9 8 12 12 C 1.50694 * 109.46935 * 183.94809 * 11 10 9 13 13 O 1.21294 * 120.00331 * 4.89478 * 12 11 10 14 14 N 1.34777 * 120.00200 * 184.89982 * 12 11 10 15 15 C 1.37093 * 120.00179 * 184.86503 * 14 12 11 16 16 H 1.07998 * 120.00010 * 354.79294 * 15 14 12 17 17 C 1.38959 * 119.99845 * 174.79957 * 15 14 12 18 18 N 1.31404 * 120.00172 * 5.19704 * 17 15 14 19 19 Si 1.86801 * 119.99787 * 185.19951 * 17 15 14 20 20 H 1.48503 * 109.46951 * 59.99772 * 19 17 15 21 21 H 1.48494 * 109.46979 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47314 * 300.00115 * 19 17 15 23 23 C 1.52992 * 117.50242 * 114.38353 * 9 8 7 24 24 C 1.53007 * 117.49853 * 45.72210 * 9 8 7 25 25 C 1.53776 * 113.61458 * 283.74773 * 4 3 2 26 26 C 1.53783 * 87.08111 * 220.01634 * 25 4 3 27 27 C 1.53771 * 113.61619 * 186.24712 * 4 3 2 28 28 H 1.08993 * 109.47250 * 304.84656 * 1 2 3 29 29 H 1.09001 * 109.47146 * 64.85240 * 1 2 3 30 30 H 1.09003 * 109.46573 * 184.84368 * 1 2 3 31 31 H 1.09000 * 109.47732 * 295.13091 * 3 2 1 32 32 H 1.09000 * 109.47195 * 55.13437 * 3 2 1 33 33 H 0.97001 * 120.00272 * 5.19925 * 7 5 4 34 34 H 1.09008 * 109.46975 * 305.09313 * 8 7 5 35 35 H 1.08999 * 109.47653 * 65.09145 * 8 7 5 36 36 H 1.00892 * 111.00118 * 170.04422 * 10 9 8 37 37 H 1.09004 * 109.46415 * 303.94315 * 11 10 9 38 38 H 1.08998 * 109.47101 * 63.94177 * 11 10 9 39 39 H 0.97005 * 119.99950 * 4.85718 * 14 12 11 40 40 H 0.96998 * 120.00213 * 180.02562 * 18 17 15 41 41 H 1.09010 * 117.49832 * 0.02562 * 23 9 8 42 42 H 1.08996 * 117.50412 * 145.02286 * 23 9 8 43 43 H 1.08993 * 117.49934 * 214.98150 * 24 9 8 44 44 H 1.09006 * 117.49513 * 359.97438 * 24 9 8 45 45 H 1.09001 * 113.61817 * 334.56310 * 25 4 3 46 46 H 1.08999 * 113.61855 * 105.46566 * 25 4 3 47 47 H 1.09001 * 113.61127 * 270.88378 * 26 25 4 48 48 H 1.08998 * 113.61734 * 139.98154 * 26 25 4 49 49 H 1.09000 * 113.61447 * 254.52917 * 27 4 3 50 50 H 1.08996 * 113.61855 * 25.43246 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5307 1.1869 0.1225 5 6 4.1369 0.3096 -0.9424 6 8 4.8484 0.7954 -1.7959 7 7 3.8881 -1.0151 -0.9463 8 6 4.5665 -1.8849 -1.9104 9 6 4.0170 -3.3076 -1.7885 10 7 4.8436 -4.2418 -1.0127 11 6 6.1236 -4.4968 -1.6869 12 6 6.9014 -5.5304 -0.9137 13 8 6.3998 -6.0724 0.0484 14 7 8.1545 -5.8524 -1.2913 15 6 8.8252 -6.8621 -0.6509 16 1 8.3837 -7.3430 0.2094 17 6 10.0732 -7.2668 -1.1088 18 7 10.6558 -6.6157 -2.0904 19 14 10.9227 -8.7364 -0.3290 20 1 10.0724 -9.9430 -0.4911 21 1 12.2318 -8.9611 -0.9929 22 1 11.1388 -8.4737 1.1165 23 6 3.2453 -3.8717 -2.9831 24 6 2.4981 -3.4738 -1.7078 25 6 4.0099 0.8528 1.5449 26 6 5.1595 1.8460 1.3062 27 6 4.2430 2.5400 0.2849 28 1 -0.3633 0.5871 0.8433 29 1 -0.3633 0.4367 -0.9303 30 1 -0.3632 -1.0241 0.0868 31 1 1.7592 1.8150 -0.9303 32 1 1.6212 1.8763 0.8432 33 1 3.2600 -1.3926 -0.3108 34 1 4.3923 -1.5134 -2.9203 35 1 5.6369 -1.8900 -1.7048 36 1 4.3487 -5.1036 -0.8384 37 1 5.9359 -4.8633 -2.6961 38 1 6.6983 -3.5720 -1.7371 39 1 8.5818 -5.3698 -2.0162 40 1 11.5268 -6.8984 -2.4103 41 1 3.1295 -3.2293 -3.8562 42 1 3.3507 -4.9360 -3.1933 43 1 2.1123 -4.2765 -1.0795 44 1 1.8904 -2.5694 -1.7411 45 1 3.3161 1.1672 2.3246 46 1 4.3415 -0.1788 1.6630 47 1 6.0441 1.3910 0.8607 48 1 5.3913 2.4625 2.1747 49 1 4.7628 2.8705 -0.6143 50 1 3.6129 3.3157 0.7200 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723538287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:53 Heat of formation + Delta-G solvation = -69.443152 kcal Electronic energy + Delta-G solvation = -30199.125334 eV Core-core repulsion = 26035.037362 eV Total energy + Delta-G solvation = -4164.087972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.93241 -39.14339 -38.10729 -37.75425 -37.09720 -34.19409 -33.89703 -32.52123 -31.18316 -29.84845 -27.46402 -26.57583 -26.47556 -25.70566 -24.05191 -23.65219 -22.56319 -21.49910 -19.84751 -19.24234 -18.90356 -17.87940 -17.06613 -16.67611 -16.54942 -16.34496 -15.94626 -15.77886 -15.40736 -15.23165 -14.70900 -14.54082 -14.36202 -14.06685 -14.00294 -13.78547 -13.27525 -13.17900 -12.84606 -12.70935 -12.55297 -12.44574 -12.19070 -12.06012 -11.68261 -11.65090 -11.55854 -11.45614 -11.16562 -11.06247 -10.75095 -10.71066 -10.58710 -10.43936 -10.29801 -10.20350 -10.05096 -9.70056 -9.47069 -8.95643 -8.42335 -8.06156 -7.95145 -6.40993 -3.81762 2.59011 3.01764 3.20692 3.26592 3.30744 3.32138 3.68301 3.89915 4.11188 4.22378 4.29886 4.31280 4.52589 4.56923 4.58916 4.69137 4.75191 4.87196 4.94266 4.97294 5.04062 5.11891 5.13295 5.27336 5.30428 5.36159 5.37538 5.53469 5.55654 5.63786 5.64699 5.73918 5.79683 5.83727 5.84248 5.88044 5.90323 6.01282 6.04786 6.13487 6.27800 6.51573 6.70448 7.18004 7.55816 7.57939 7.65337 8.06634 8.27628 8.61528 9.17935 9.54458 10.05243 10.76565 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.002400 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.685845 B =11665.422425 C =12556.157145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.083 3.917 4 C -0.108 4.108 5 C 0.543 3.457 6 O -0.546 6.546 7 N -0.705 5.705 8 C 0.164 3.836 9 C 0.040 3.960 10 N -0.628 5.628 11 C 0.049 3.951 12 C 0.441 3.559 13 O -0.587 6.587 14 N -0.561 5.561 15 C -0.301 4.301 16 H 0.102 0.898 17 C 0.023 3.977 18 N -0.900 5.900 19 Si 0.930 3.070 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.208 4.208 24 C -0.164 4.164 25 C -0.120 4.120 26 C -0.143 4.143 27 C -0.114 4.114 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.411 0.589 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.356 0.644 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.393 0.607 40 H 0.272 0.728 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.073 0.927 49 H 0.087 0.913 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.942 17.501 1.586 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C 0.006 3.994 4 C -0.111 4.111 5 C 0.328 3.672 6 O -0.424 6.424 7 N -0.357 5.357 8 C 0.040 3.960 9 C -0.053 4.053 10 N -0.259 5.259 11 C -0.083 4.083 12 C 0.227 3.773 13 O -0.472 6.472 14 N -0.198 5.198 15 C -0.431 4.431 16 H 0.120 0.880 17 C -0.178 4.178 18 N -0.541 5.541 19 Si 0.757 3.243 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.249 4.249 24 C -0.202 4.202 25 C -0.158 4.158 26 C -0.180 4.180 27 C -0.151 4.151 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.248 0.752 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.177 0.823 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.108 0.892 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.092 0.908 49 H 0.105 0.895 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.157 17.709 1.957 26.162 hybrid contribution -0.115 -1.050 -0.615 1.222 sum -19.273 16.660 1.342 25.510 Atomic orbital electron populations 1.22750 0.80602 1.03035 0.99944 1.87815 1.19971 1.27515 1.95432 1.22428 0.90985 0.85180 1.00845 1.22079 0.94015 0.98554 0.96451 1.19640 0.80338 0.82360 0.84889 1.90686 1.38857 1.74262 1.38617 1.45908 1.45727 1.06645 1.37434 1.20720 0.97254 0.85340 0.92646 1.21846 0.91535 0.94012 0.97896 1.59941 1.03906 1.17661 1.44441 1.21692 0.91333 0.99481 0.95794 1.19768 0.83410 0.86529 0.87593 1.90516 1.70102 1.57046 1.29494 1.41832 1.12089 1.32594 1.33248 1.19644 0.99920 1.11211 1.12327 0.87986 1.25273 0.96858 0.99056 0.96656 1.69613 1.16860 1.40177 1.27408 0.85926 0.78079 0.81179 0.79081 1.19930 1.20966 1.19856 1.23677 1.05996 1.02100 0.93077 1.23146 0.92909 1.03736 1.00410 1.22956 0.98012 1.01076 0.93742 1.22865 0.97550 0.98293 0.99288 1.22823 0.97750 0.93766 1.00802 0.93969 0.94144 0.89343 0.92808 0.92067 0.75217 0.90901 0.90454 0.82333 0.93256 0.89580 0.77394 0.91775 0.88568 0.88525 0.88283 0.87868 0.89157 0.90340 0.89685 0.90812 0.89483 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.23 8.80 -35.23 -0.31 -3.54 16 3 C 0.08 0.64 5.29 37.16 0.20 0.84 16 4 C -0.11 -1.04 1.00 -154.85 -0.15 -1.19 16 5 C 0.54 7.10 6.33 -10.98 -0.07 7.03 16 6 O -0.55 -9.01 15.95 5.56 0.09 -8.92 16 7 N -0.71 -8.68 4.97 -60.29 -0.30 -8.98 16 8 C 0.16 2.18 5.81 -4.04 -0.02 2.16 16 9 C 0.04 0.51 2.04 -131.60 -0.27 0.25 16 10 N -0.63 -10.16 6.40 -101.22 -0.65 -10.80 16 11 C 0.05 0.88 5.95 -4.98 -0.03 0.85 16 12 C 0.44 10.51 7.82 -10.99 -0.09 10.42 16 13 O -0.59 -15.91 15.65 5.55 0.09 -15.83 16 14 N -0.56 -14.41 5.28 -10.96 -0.06 -14.47 16 15 C -0.30 -8.48 9.67 -14.93 -0.14 -8.63 16 16 H 0.10 3.00 7.17 -52.49 -0.38 2.62 16 17 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 18 N -0.90 -24.74 13.06 55.50 0.72 -24.01 16 19 Si 0.93 21.20 29.56 -169.99 -5.02 16.18 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 23 C -0.21 -2.31 10.01 -26.70 -0.27 -2.57 16 24 C -0.16 -1.71 9.20 -26.69 -0.25 -1.96 16 25 C -0.12 -1.06 7.22 -25.92 -0.19 -1.25 16 26 C -0.14 -1.30 7.81 -25.92 -0.20 -1.50 16 27 C -0.11 -0.99 7.11 -25.92 -0.18 -1.18 16 28 H 0.04 0.19 8.12 -51.93 -0.42 -0.23 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.36 8.05 -51.93 -0.42 -0.06 16 33 H 0.41 4.72 6.37 -40.82 -0.26 4.46 16 34 H 0.07 0.96 7.84 -51.92 -0.41 0.55 16 35 H 0.08 1.17 6.68 -51.93 -0.35 0.83 16 36 H 0.36 5.98 8.08 -39.30 -0.32 5.66 16 37 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.09 1.48 6.84 -51.93 -0.36 1.13 16 39 H 0.39 9.69 7.92 -40.82 -0.32 9.37 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.10 0.98 8.04 -51.92 -0.42 0.56 16 42 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.10 0.98 7.85 -51.93 -0.41 0.58 16 45 H 0.09 0.63 8.05 -51.93 -0.42 0.21 16 46 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.09 0.91 7.35 -51.93 -0.38 0.53 16 50 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 LS Contribution 410.68 15.07 6.19 6.19 Total: -1.00 -32.89 410.68 -8.10 -40.99 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -8.21 Total: 18.08 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -0.65 Total: 5.11 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.28 Total: -58.26 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.13 Total: -28.29 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.89 -8.10 -40.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723538287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.453 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds