Wall clock time and date at job start Sat Apr 11 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99444 * 2 1 4 4 C 1.53005 * 109.47045 * 175.13027 * 3 2 1 5 5 C 1.50704 * 112.84907 * 55.04924 * 4 3 2 6 6 O 1.21279 * 120.00119 * 112.20053 * 5 4 3 7 7 N 1.34781 * 119.99937 * 292.20648 * 5 4 3 8 8 C 1.46499 * 119.99882 * 185.20609 * 7 5 4 9 9 C 1.53000 * 109.47302 * 185.09582 * 8 7 5 10 10 N 1.46903 * 115.54961 * 260.05845 * 9 8 7 11 11 C 1.46902 * 110.99728 * 294.00457 * 10 9 8 12 12 C 1.50694 * 109.46935 * 183.94809 * 11 10 9 13 13 O 1.21294 * 120.00331 * 4.89478 * 12 11 10 14 14 N 1.34777 * 120.00200 * 184.89982 * 12 11 10 15 15 C 1.37093 * 120.00179 * 184.86503 * 14 12 11 16 16 H 1.07998 * 120.00010 * 354.79294 * 15 14 12 17 17 C 1.38959 * 119.99845 * 174.79957 * 15 14 12 18 18 N 1.31404 * 120.00172 * 5.19704 * 17 15 14 19 19 Si 1.86801 * 119.99787 * 185.19951 * 17 15 14 20 20 H 1.48503 * 109.46951 * 59.99772 * 19 17 15 21 21 H 1.48494 * 109.46979 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47314 * 300.00115 * 19 17 15 23 23 C 1.52992 * 117.50242 * 114.38353 * 9 8 7 24 24 C 1.53007 * 117.49853 * 45.72210 * 9 8 7 25 25 C 1.53776 * 113.61458 * 283.74773 * 4 3 2 26 26 C 1.53783 * 87.08111 * 220.01634 * 25 4 3 27 27 C 1.53771 * 113.61619 * 186.24712 * 4 3 2 28 28 H 1.08993 * 109.47250 * 304.84656 * 1 2 3 29 29 H 1.09001 * 109.47146 * 64.85240 * 1 2 3 30 30 H 1.09003 * 109.46573 * 184.84368 * 1 2 3 31 31 H 1.09000 * 109.47732 * 295.13091 * 3 2 1 32 32 H 1.09000 * 109.47195 * 55.13437 * 3 2 1 33 33 H 0.97001 * 120.00272 * 5.19925 * 7 5 4 34 34 H 1.09008 * 109.46975 * 305.09313 * 8 7 5 35 35 H 1.08999 * 109.47653 * 65.09145 * 8 7 5 36 36 H 1.00892 * 111.00118 * 170.04422 * 10 9 8 37 37 H 1.09004 * 109.46415 * 303.94315 * 11 10 9 38 38 H 1.08998 * 109.47101 * 63.94177 * 11 10 9 39 39 H 0.97005 * 119.99950 * 4.85718 * 14 12 11 40 40 H 0.96998 * 120.00213 * 180.02562 * 18 17 15 41 41 H 1.09010 * 117.49832 * 0.02562 * 23 9 8 42 42 H 1.08996 * 117.50412 * 145.02286 * 23 9 8 43 43 H 1.08993 * 117.49934 * 214.98150 * 24 9 8 44 44 H 1.09006 * 117.49513 * 359.97438 * 24 9 8 45 45 H 1.09001 * 113.61817 * 334.56310 * 25 4 3 46 46 H 1.08999 * 113.61855 * 105.46566 * 25 4 3 47 47 H 1.09001 * 113.61127 * 270.88378 * 26 25 4 48 48 H 1.08998 * 113.61734 * 139.98154 * 26 25 4 49 49 H 1.09000 * 113.61447 * 254.52917 * 27 4 3 50 50 H 1.08996 * 113.61855 * 25.43246 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5307 1.1869 0.1225 5 6 4.1369 0.3096 -0.9424 6 8 4.8484 0.7954 -1.7959 7 7 3.8881 -1.0151 -0.9463 8 6 4.5665 -1.8849 -1.9104 9 6 4.0170 -3.3076 -1.7885 10 7 4.8436 -4.2418 -1.0127 11 6 6.1236 -4.4968 -1.6869 12 6 6.9014 -5.5304 -0.9137 13 8 6.3998 -6.0724 0.0484 14 7 8.1545 -5.8524 -1.2913 15 6 8.8252 -6.8621 -0.6509 16 1 8.3837 -7.3430 0.2094 17 6 10.0732 -7.2668 -1.1088 18 7 10.6558 -6.6157 -2.0904 19 14 10.9227 -8.7364 -0.3290 20 1 10.0724 -9.9430 -0.4911 21 1 12.2318 -8.9611 -0.9929 22 1 11.1388 -8.4737 1.1165 23 6 3.2453 -3.8717 -2.9831 24 6 2.4981 -3.4738 -1.7078 25 6 4.0099 0.8528 1.5449 26 6 5.1595 1.8460 1.3062 27 6 4.2430 2.5400 0.2849 28 1 -0.3633 0.5871 0.8433 29 1 -0.3633 0.4367 -0.9303 30 1 -0.3632 -1.0241 0.0868 31 1 1.7592 1.8150 -0.9303 32 1 1.6212 1.8763 0.8432 33 1 3.2600 -1.3926 -0.3108 34 1 4.3923 -1.5134 -2.9203 35 1 5.6369 -1.8900 -1.7048 36 1 4.3487 -5.1036 -0.8384 37 1 5.9359 -4.8633 -2.6961 38 1 6.6983 -3.5720 -1.7371 39 1 8.5818 -5.3698 -2.0162 40 1 11.5268 -6.8984 -2.4103 41 1 3.1295 -3.2293 -3.8562 42 1 3.3507 -4.9360 -3.1933 43 1 2.1123 -4.2765 -1.0795 44 1 1.8904 -2.5694 -1.7411 45 1 3.3161 1.1672 2.3246 46 1 4.3415 -0.1788 1.6630 47 1 6.0441 1.3910 0.8607 48 1 5.3913 2.4625 2.1747 49 1 4.7628 2.8705 -0.6143 50 1 3.6129 3.3157 0.7200 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723538287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:52 Heat of formation + Delta-G solvation = -94.426696 kcal Electronic energy + Delta-G solvation = -30200.208702 eV Core-core repulsion = 26035.037362 eV Total energy + Delta-G solvation = -4165.171340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80426 -40.47336 -39.53645 -38.69560 -37.88303 -36.05547 -35.17259 -33.89235 -33.22276 -30.50801 -28.48269 -28.15336 -27.07449 -26.39313 -25.88898 -24.41357 -23.45873 -22.34959 -21.16324 -20.86459 -19.95543 -19.83530 -18.03881 -17.78657 -17.37613 -17.19329 -17.00538 -16.67984 -16.61546 -16.40775 -16.26703 -15.86120 -15.68384 -15.42797 -15.20043 -14.74132 -14.65878 -14.16649 -13.93610 -13.79152 -13.55419 -13.51269 -13.39600 -13.26834 -12.97568 -12.90087 -12.77573 -12.45680 -12.42883 -12.15831 -12.13632 -11.91679 -11.83501 -11.50016 -11.39273 -11.29596 -11.27468 -10.79794 -10.51305 -10.36816 -10.04604 -10.02998 -9.30100 -8.48481 -5.97695 1.38728 1.40708 1.52120 1.59738 2.00411 2.09751 2.26662 2.61772 2.74331 3.03360 3.16896 3.41652 3.52314 3.57855 3.59486 3.72404 3.79706 3.88364 3.99375 4.02556 4.25235 4.36056 4.44509 4.47701 4.49622 4.54724 4.60104 4.63166 4.65869 4.71286 4.73253 4.77844 4.78803 4.85030 4.95350 4.98540 5.03077 5.10525 5.16302 5.19066 5.38937 5.43110 5.48630 5.83327 6.03888 6.21921 6.32015 6.56534 6.62866 7.09310 7.27637 7.52066 8.06086 8.68780 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.002400 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.685845 B =11665.422425 C =12556.157145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.408 6.408 3 C 0.086 3.914 4 C -0.110 4.110 5 C 0.535 3.465 6 O -0.588 6.588 7 N -0.698 5.698 8 C 0.168 3.832 9 C 0.024 3.976 10 N -0.638 5.638 11 C 0.066 3.934 12 C 0.440 3.560 13 O -0.622 6.622 14 N -0.572 5.572 15 C -0.336 4.336 16 H 0.081 0.919 17 C -0.013 4.013 18 N -0.920 5.920 19 Si 0.994 3.006 20 H -0.270 1.270 21 H -0.270 1.270 22 H -0.271 1.271 23 C -0.198 4.198 24 C -0.142 4.142 25 C -0.112 4.112 26 C -0.147 4.147 27 C -0.107 4.107 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.416 0.584 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.352 0.648 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.395 0.605 40 H 0.278 0.722 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.058 0.942 47 H 0.053 0.947 48 H 0.094 0.906 49 H 0.063 0.937 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.813 18.151 2.084 28.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C 0.009 3.991 4 C -0.114 4.114 5 C 0.322 3.678 6 O -0.469 6.469 7 N -0.349 5.349 8 C 0.044 3.956 9 C -0.069 4.069 10 N -0.269 5.269 11 C -0.066 4.066 12 C 0.227 3.773 13 O -0.509 6.509 14 N -0.208 5.208 15 C -0.466 4.466 16 H 0.099 0.901 17 C -0.213 4.213 18 N -0.560 5.560 19 Si 0.818 3.182 20 H -0.195 1.195 21 H -0.195 1.195 22 H -0.196 1.196 23 C -0.238 4.238 24 C -0.180 4.180 25 C -0.150 4.150 26 C -0.185 4.185 27 C -0.145 4.145 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.254 0.746 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.172 0.828 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.229 0.771 40 H 0.088 0.912 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.112 0.888 49 H 0.082 0.918 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.055 18.370 2.446 28.050 hybrid contribution 0.420 -1.220 -0.778 1.507 sum -20.635 17.150 1.668 26.884 Atomic orbital electron populations 1.22896 0.79220 1.03845 1.00766 1.87778 1.21482 1.27843 1.95609 1.22441 0.89278 0.85398 1.01985 1.22099 0.95523 0.98223 0.95510 1.20356 0.79652 0.82698 0.85127 1.90659 1.40757 1.74985 1.40538 1.45899 1.45380 1.06509 1.37143 1.20585 0.96028 0.86069 0.92937 1.21756 0.92572 0.92808 0.99729 1.59888 1.03652 1.17832 1.45550 1.21494 0.91788 0.97716 0.95641 1.20727 0.82915 0.86548 0.87067 1.90481 1.70755 1.58488 1.31158 1.41915 1.12884 1.32604 1.33442 1.19644 1.01180 1.12836 1.12914 0.90142 1.26092 0.96870 1.01343 0.96965 1.69682 1.17262 1.41118 1.27982 0.84973 0.77350 0.77673 0.78249 1.19516 1.19494 1.19630 1.23704 1.04630 1.02171 0.93284 1.23215 0.90844 1.04342 0.99592 1.22981 0.98192 0.99876 0.93925 1.22849 0.96734 0.98809 1.00088 1.22865 0.97735 0.94102 0.99783 0.92542 0.93808 0.88729 0.93002 0.89235 0.74576 0.90739 0.92946 0.82752 0.91339 0.88839 0.77079 0.91228 0.87311 0.88608 0.87632 0.86495 0.86281 0.92281 0.92771 0.88758 0.91823 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -5.84 8.80 -148.98 -1.31 -7.15 16 3 C 0.09 1.12 5.29 71.98 0.38 1.50 16 4 C -0.11 -2.01 1.00 -52.40 -0.05 -2.06 16 5 C 0.53 14.14 6.33 87.66 0.55 14.70 16 6 O -0.59 -20.17 15.95 -3.03 -0.05 -20.22 16 7 N -0.70 -17.11 4.97 -463.05 -2.30 -19.41 16 8 C 0.17 4.49 5.81 86.38 0.50 4.99 16 9 C 0.02 0.59 2.04 3.53 0.01 0.60 16 10 N -0.64 -20.54 6.40 -474.15 -3.03 -23.58 16 11 C 0.07 2.38 5.95 85.55 0.51 2.89 16 12 C 0.44 21.44 7.82 87.66 0.69 22.13 16 13 O -0.62 -34.65 15.65 -3.07 -0.05 -34.70 16 14 N -0.57 -30.15 5.28 -306.99 -1.62 -31.77 16 15 C -0.34 -19.41 9.67 84.04 0.81 -18.60 16 16 H 0.08 4.91 7.17 -2.91 -0.02 4.89 16 17 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 18 N -0.92 -50.66 13.06 21.66 0.28 -50.38 16 19 Si 0.99 43.39 29.56 68.60 2.03 45.42 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 C -0.20 -4.01 10.01 30.62 0.31 -3.70 16 24 C -0.14 -2.67 9.20 30.62 0.28 -2.39 16 25 C -0.11 -1.82 7.22 31.12 0.22 -1.60 16 26 C -0.15 -2.59 7.81 31.12 0.24 -2.35 16 27 C -0.11 -1.74 7.11 31.12 0.22 -1.52 16 28 H 0.06 0.33 8.12 -2.39 -0.02 0.31 16 29 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.68 8.05 -2.39 -0.02 0.66 16 33 H 0.42 9.24 6.37 -92.71 -0.59 8.65 16 34 H 0.07 1.96 7.84 -2.38 -0.02 1.94 16 35 H 0.05 1.66 6.68 -2.39 -0.02 1.64 16 36 H 0.35 11.76 8.08 -89.70 -0.72 11.03 16 37 H 0.07 2.23 8.09 -2.38 -0.02 2.21 16 38 H 0.09 3.27 6.84 -2.39 -0.02 3.26 16 39 H 0.40 20.02 7.92 -92.70 -0.73 19.29 16 40 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.11 1.96 8.04 -2.38 -0.02 1.94 16 42 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.12 1.92 7.85 -2.38 -0.02 1.90 16 45 H 0.12 1.27 8.05 -2.39 -0.02 1.25 16 46 H 0.06 1.19 8.10 -2.39 -0.02 1.18 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.06 1.35 7.35 -2.39 -0.02 1.34 16 50 H 0.12 1.14 8.10 -2.39 -0.02 1.12 16 Total: -1.00 -73.24 410.68 -0.74 -73.98 By element: Atomic # 1 Polarization: 53.03 SS G_CDS: -1.08 Total: 51.95 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 6.39 Total: 15.86 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -6.67 Total: -125.14 kcal Atomic # 8 Polarization: -60.67 SS G_CDS: -1.41 Total: -62.07 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -73.24 -0.74 -73.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723538287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.449 kcal (2) G-P(sol) polarization free energy of solvation -73.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds