Wall clock time and date at job start Sat Apr 11 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42903 * 114.00346 * 2 1 4 4 H 1.08999 * 110.05265 * 331.41712 * 3 2 1 5 5 C 1.54267 * 110.03213 * 92.82821 * 3 2 1 6 6 C 1.54886 * 104.19345 * 142.89587 * 5 3 2 7 7 C 1.54879 * 102.75162 * 322.06051 * 6 5 3 8 8 C 1.53870 * 110.03692 * 210.00026 * 3 2 1 9 9 H 1.09005 * 110.03002 * 0.04745 * 8 3 2 10 10 C 1.50701 * 110.03187 * 121.42799 * 8 3 2 11 11 O 1.21271 * 120.00082 * 359.97438 * 10 8 3 12 12 N 1.34780 * 119.99663 * 179.97438 * 10 8 3 13 13 C 1.46499 * 119.99958 * 0.02562 * 12 10 8 14 14 C 1.46501 * 119.99771 * 179.97438 * 12 10 8 15 15 C 1.53512 * 114.16686 * 120.00257 * 14 12 10 16 16 N 1.47482 * 87.93064 * 87.62556 * 15 14 12 17 17 C 1.46901 * 111.00126 * 138.70321 * 16 15 14 18 18 C 1.50696 * 109.47252 * 169.99588 * 17 16 15 19 19 O 1.21302 * 120.00026 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00336 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00121 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00542 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99766 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00118 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00012 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46845 * 269.99991 * 25 23 21 27 27 H 1.48503 * 109.47399 * 29.99481 * 25 23 21 28 28 H 1.48498 * 109.47295 * 150.00088 * 25 23 21 29 29 C 1.47473 * 87.83897 * 27.00672 * 16 15 14 30 30 H 1.09001 * 109.47117 * 59.99910 * 1 2 3 31 31 H 1.08999 * 109.47194 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47673 * 299.99873 * 1 2 3 33 33 H 1.08994 * 110.48997 * 261.58118 * 5 3 2 34 34 H 1.09006 * 110.48779 * 24.22367 * 5 3 2 35 35 H 1.09001 * 110.75567 * 80.37980 * 6 5 3 36 36 H 1.08997 * 110.75809 * 203.55456 * 6 5 3 37 37 H 1.08998 * 110.48822 * 279.25886 * 7 6 5 38 38 H 1.09006 * 110.49041 * 156.61701 * 7 6 5 39 39 H 1.09007 * 109.46742 * 269.99419 * 13 12 10 40 40 H 1.09000 * 109.47797 * 29.99381 * 13 12 10 41 41 H 1.09002 * 109.47336 * 149.99932 * 13 12 10 42 42 H 1.08999 * 113.25751 * 347.05230 * 14 12 10 43 43 H 1.09000 * 113.48054 * 332.85794 * 15 14 12 44 44 H 1.08998 * 113.47336 * 202.39229 * 15 14 12 45 45 H 1.09004 * 109.47109 * 49.99365 * 17 16 15 46 46 H 1.08997 * 109.46839 * 289.99884 * 17 16 15 47 47 H 0.97000 * 119.99425 * 0.02562 * 20 18 17 48 48 H 0.97000 * 120.00151 * 359.97438 * 24 23 21 49 49 H 1.09008 * 113.47580 * 87.75447 * 29 16 15 50 50 H 1.08997 * 113.47830 * 218.22187 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3409 2.0126 -0.4899 5 6 2.2905 1.7591 1.4476 6 6 3.6252 2.5388 1.3495 7 6 4.4265 1.7155 0.3108 8 6 3.3683 1.2778 -0.7228 9 1 3.5837 0.2687 -1.0744 10 6 3.3541 2.2370 -1.8851 11 8 2.3580 2.8863 -2.1232 12 7 4.4486 2.3730 -2.6598 13 6 5.6517 1.5881 -2.3724 14 6 4.4346 3.3050 -3.7901 15 6 5.4922 4.4143 -3.7030 16 7 6.4330 3.4960 -4.3714 17 6 7.2384 4.2055 -5.3744 18 6 8.3456 3.3051 -5.8581 19 8 8.4531 2.1823 -5.4117 20 7 9.2160 3.7467 -6.7876 21 6 10.2230 2.9273 -7.2281 22 1 10.3192 1.9280 -6.8300 23 6 11.1205 3.3829 -8.1860 24 7 11.0038 4.5990 -8.6701 25 14 12.4922 2.2662 -8.7867 26 1 13.6924 2.4529 -7.9323 27 1 12.0471 0.8513 -8.7124 28 1 12.8277 2.6065 -10.1926 29 6 5.2665 2.8441 -4.9951 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.4931 2.4110 1.8043 34 1 2.4006 0.8955 2.1035 35 1 3.4543 3.5534 0.9896 36 1 4.1359 2.5531 2.3124 37 1 4.8816 0.8449 0.7831 38 1 5.1880 2.3357 -0.1622 39 1 6.2921 2.1428 -1.6865 40 1 5.3667 0.6398 -1.9168 41 1 6.1916 1.3978 -3.3000 42 1 3.4355 3.6598 -4.0431 43 1 5.7790 4.6616 -2.6810 44 1 5.2482 5.2945 -4.2978 45 1 7.6682 5.1020 -4.9273 46 1 6.6052 4.4870 -6.2157 47 1 9.1298 4.6444 -7.1449 48 1 10.2909 5.1785 -8.3590 49 1 4.9622 3.3053 -5.9347 50 1 5.3620 1.7608 -5.0681 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723776514.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:05 Heat of formation + Delta-G solvation = -91.555868 kcal Electronic energy + Delta-G solvation = -30293.656548 eV Core-core repulsion = 26128.609696 eV Total energy + Delta-G solvation = -4165.046851 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.20393 -41.01385 -39.84737 -38.97063 -36.85102 -36.36861 -35.88053 -33.17105 -31.72841 -30.10665 -29.21232 -28.13177 -27.24847 -27.07902 -26.73440 -25.21129 -23.08801 -21.85073 -21.48623 -20.85798 -19.96094 -19.61229 -18.64366 -18.15845 -17.70913 -17.43140 -17.04340 -16.73858 -16.40990 -16.32825 -16.02740 -15.90211 -15.45484 -15.30430 -15.16814 -14.91604 -14.77670 -14.39060 -14.12606 -13.66217 -13.59491 -13.37852 -13.34224 -13.06814 -12.89511 -12.83891 -12.63948 -12.34632 -12.21291 -12.18607 -11.96731 -11.94435 -11.91934 -11.86562 -11.80915 -11.57201 -11.49841 -10.84138 -10.58041 -10.42860 -10.08689 -9.81530 -9.71458 -8.91414 -6.05077 1.44979 1.52531 1.54828 1.77324 1.81570 2.03448 2.39569 2.72054 2.80871 3.16656 3.24854 3.33826 3.39020 3.47675 3.69825 3.73480 4.02400 4.05003 4.13069 4.24869 4.29722 4.31858 4.36126 4.39059 4.40745 4.44019 4.49064 4.53401 4.57535 4.62241 4.66731 4.70801 4.74818 4.77559 4.84072 4.92534 4.98063 5.04747 5.11815 5.20252 5.23774 5.34116 5.48567 5.60320 5.86370 5.98130 6.22644 6.32222 6.59505 6.77425 7.00975 7.46681 7.96359 8.56483 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026011 B = 0.002029 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.188950 B =13796.243742 C =14001.303276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.088 3.912 4 H 0.071 0.929 5 C -0.137 4.137 6 C -0.121 4.121 7 C -0.113 4.113 8 C -0.111 4.111 9 H 0.114 0.886 10 C 0.525 3.475 11 O -0.577 6.577 12 N -0.584 5.584 13 C 0.083 3.917 14 C 0.120 3.880 15 C -0.005 4.005 16 N -0.460 5.460 17 C 0.020 3.980 18 C 0.448 3.552 19 O -0.609 6.609 20 N -0.591 5.591 21 C -0.406 4.406 22 H 0.072 0.928 23 C -0.045 4.045 24 N -0.919 5.919 25 Si 1.135 2.865 26 H -0.271 1.271 27 H -0.278 1.278 28 H -0.274 1.274 29 C -0.006 4.006 30 H 0.036 0.964 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.109 0.891 46 H 0.085 0.915 47 H 0.383 0.617 48 H 0.259 0.741 49 H 0.094 0.906 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.772 -2.176 18.561 26.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C 0.030 3.970 4 H 0.089 0.911 5 C -0.175 4.175 6 C -0.158 4.158 7 C -0.150 4.150 8 C -0.132 4.132 9 H 0.132 0.868 10 C 0.315 3.685 11 O -0.457 6.457 12 N -0.314 5.314 13 C -0.059 4.059 14 C 0.015 3.985 15 C -0.135 4.135 16 N -0.183 5.183 17 C -0.112 4.112 18 C 0.236 3.764 19 O -0.494 6.494 20 N -0.231 5.231 21 C -0.535 4.535 22 H 0.090 0.910 23 C -0.243 4.243 24 N -0.559 5.559 25 Si 0.955 3.045 26 H -0.196 1.196 27 H -0.203 1.203 28 H -0.199 1.199 29 C -0.136 4.136 30 H 0.055 0.945 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.133 0.867 43 H 0.109 0.891 44 H 0.120 0.880 45 H 0.127 0.873 46 H 0.103 0.897 47 H 0.217 0.783 48 H 0.070 0.930 49 H 0.112 0.888 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.269 -3.239 18.068 25.202 hybrid contribution -1.877 1.315 -0.125 2.295 sum -19.146 -1.924 17.943 26.310 Atomic orbital electron populations 1.22924 0.79837 1.03741 1.00417 1.87846 1.21139 1.27934 1.95157 1.22790 0.93424 0.84717 0.96101 0.91127 1.22829 0.98417 1.00734 0.95534 1.22444 0.95227 0.98167 0.99986 1.22492 0.96124 1.01481 0.94952 1.21928 0.97595 0.99670 0.93985 0.86768 1.20832 0.81674 0.82707 0.83326 1.90617 1.33762 1.48867 1.72486 1.47425 1.14078 1.41288 1.28594 1.21976 0.85926 0.95125 1.02888 1.22000 0.99475 0.90620 0.86442 1.24357 0.91255 0.96042 1.01799 1.68841 1.11994 1.18160 1.19262 1.22408 0.95473 0.96462 0.96819 1.20749 0.85106 0.88890 0.81677 1.90489 1.75985 1.22668 1.60245 1.42024 1.27612 1.15610 1.37859 1.20503 1.09250 0.99160 1.24623 0.90997 1.27786 1.02803 0.99606 0.94061 1.70944 1.33680 1.07628 1.43616 0.82601 0.72410 0.72828 0.76675 1.19626 1.20303 1.19857 1.24323 0.90104 1.01889 0.97289 0.94505 0.88162 0.92868 0.90697 0.89707 0.92228 0.88981 0.88372 0.90445 0.91527 0.89732 0.91041 0.86674 0.89148 0.88022 0.87318 0.89666 0.78265 0.92995 0.88812 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.85 113.37 1.23 1.63 16 2 O -0.40 -8.18 10.26 -148.98 -1.53 -9.71 16 3 C 0.09 1.72 2.98 31.32 0.09 1.82 16 4 H 0.07 1.67 6.06 -2.39 -0.01 1.65 16 5 C -0.14 -2.03 6.56 31.67 0.21 -1.82 16 6 C -0.12 -1.66 6.91 31.88 0.22 -1.44 16 7 C -0.11 -1.67 5.51 31.67 0.17 -1.50 16 8 C -0.11 -2.14 2.23 -10.82 -0.02 -2.16 16 9 H 0.11 2.16 7.16 -2.38 -0.02 2.14 16 10 C 0.52 12.79 6.99 87.66 0.61 13.41 16 11 O -0.58 -17.39 14.72 -3.00 -0.04 -17.43 16 12 N -0.58 -13.66 3.08 -821.60 -2.53 -16.19 16 13 C 0.08 1.85 8.11 127.77 1.04 2.89 16 14 C 0.12 2.80 4.67 45.45 0.21 3.02 16 15 C 0.00 -0.11 7.32 83.58 0.61 0.50 16 16 N -0.46 -13.46 4.40 -932.53 -4.10 -17.57 16 17 C 0.02 0.64 5.30 85.56 0.45 1.09 16 18 C 0.45 20.75 7.85 87.66 0.69 21.44 16 19 O -0.61 -33.18 16.01 -3.10 -0.05 -33.23 16 20 N -0.59 -29.63 5.28 -306.98 -1.62 -31.25 16 21 C -0.41 -23.07 9.68 84.04 0.81 -22.26 16 22 H 0.07 4.41 7.16 -2.91 -0.02 4.39 16 23 C -0.04 -2.42 5.50 84.93 0.47 -1.95 16 24 N -0.92 -51.11 13.68 21.66 0.30 -50.81 16 25 Si 1.13 48.55 29.92 68.60 2.05 50.60 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 27 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 C -0.01 -0.17 6.72 83.58 0.56 0.39 16 30 H 0.04 0.59 8.10 -2.39 -0.02 0.57 16 31 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.16 8.08 -2.38 -0.02 1.14 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.21 5.61 -2.38 -0.01 1.20 16 39 H 0.07 1.41 6.99 -2.38 -0.02 1.40 16 40 H 0.08 1.52 6.21 -2.39 -0.01 1.51 16 41 H 0.07 2.07 5.68 -2.39 -0.01 2.05 16 42 H 0.12 2.69 7.28 -2.39 -0.02 2.67 16 43 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 44 H 0.10 1.77 7.91 -2.39 -0.02 1.75 16 45 H 0.11 3.03 8.08 -2.38 -0.02 3.02 16 46 H 0.09 2.31 7.30 -2.39 -0.02 2.29 16 47 H 0.38 17.60 6.73 -92.71 -0.62 16.98 16 48 H 0.26 13.90 6.78 -92.71 -0.63 13.27 16 49 H 0.09 2.20 7.42 -2.38 -0.02 2.18 16 50 H 0.07 2.23 7.25 -2.39 -0.02 2.21 16 Total: -1.00 -74.36 392.62 0.31 -74.06 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: 0.48 Total: 36.47 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 7.36 Total: 15.06 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -7.96 Total: -115.82 kcal Atomic # 8 Polarization: -58.75 SS G_CDS: -1.62 Total: -60.37 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.05 Total: 50.60 kcal Total: -74.36 0.31 -74.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723776514.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.501 kcal (2) G-P(sol) polarization free energy of solvation -74.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds