Wall clock time and date at job start Sat Apr 11 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.32964 * 117.64211 * 2 1 4 4 O 1.21275 * 118.35619 * 2.20461 * 3 2 1 5 5 C 1.50178 * 123.39514 * 182.12799 * 3 2 1 6 6 C 1.53067 * 109.89010 * 342.47408 * 5 3 2 7 7 C 1.53342 * 108.42978 * 48.89906 * 6 5 3 8 8 C 1.45755 * 117.95053 * 180.02562 * 2 1 3 9 9 H 1.08999 * 109.29973 * 281.23555 * 8 2 1 10 10 C 1.50700 * 109.30237 * 40.81462 * 8 2 1 11 11 O 1.21286 * 119.99390 * 20.41778 * 10 8 2 12 12 N 1.34769 * 120.00329 * 200.42087 * 10 8 2 13 13 C 1.46502 * 120.00094 * 180.02562 * 12 10 8 14 14 C 1.52994 * 109.47130 * 176.60619 * 13 12 10 15 15 N 1.46506 * 109.54654 * 54.53343 * 14 13 12 16 16 C 1.36936 * 119.99463 * 62.04126 * 15 14 13 17 17 H 1.08002 * 120.00455 * 354.03259 * 16 15 14 18 18 C 1.38811 * 119.99596 * 174.02336 * 16 15 14 19 19 N 1.31620 * 120.00147 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00049 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46864 * 60.00409 * 20 18 16 22 22 H 1.48506 * 109.47098 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47307 * 300.00347 * 20 18 16 24 24 C 1.53178 * 109.54751 * 294.26702 * 14 13 12 25 25 C 1.53089 * 109.16799 * 183.15207 * 24 14 13 26 26 O 1.42904 * 109.41395 * 57.60721 * 25 24 14 27 27 C 1.42899 * 114.09582 * 298.84338 * 26 25 24 28 28 C 1.53091 * 109.41814 * 61.16212 * 27 26 25 29 29 H 1.09003 * 109.47090 * 269.99062 * 1 2 3 30 30 H 1.09004 * 109.47618 * 29.99355 * 1 2 3 31 31 H 1.09001 * 109.47107 * 149.99459 * 1 2 3 32 32 H 1.08995 * 109.40243 * 222.34132 * 5 3 2 33 33 H 1.09002 * 109.39754 * 102.59796 * 5 3 2 34 34 H 1.09003 * 109.67447 * 289.16074 * 6 5 3 35 35 H 1.09001 * 109.67149 * 168.63244 * 6 5 3 36 36 H 1.08996 * 109.60883 * 172.70920 * 7 6 5 37 37 H 1.09002 * 109.73494 * 52.30173 * 7 6 5 38 38 H 0.97001 * 119.99833 * 359.97438 * 12 10 8 39 39 H 1.08995 * 109.46875 * 296.60889 * 13 12 10 40 40 H 1.08999 * 109.46826 * 56.60577 * 13 12 10 41 41 H 0.96999 * 120.00382 * 242.05451 * 15 14 13 42 42 H 0.96998 * 120.00007 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.52364 * 303.06260 * 24 14 13 44 44 H 1.09004 * 109.52422 * 63.24356 * 24 14 13 45 45 H 1.08996 * 109.48074 * 297.62829 * 25 24 14 46 46 H 1.09002 * 109.48027 * 177.59207 * 25 24 14 47 47 H 1.08994 * 109.48635 * 301.17092 * 27 26 25 48 48 H 1.09007 * 109.47671 * 181.14188 * 27 26 25 49 49 H 1.08994 * 109.52739 * 182.48402 * 28 27 26 50 50 H 1.09001 * 109.57710 * 62.31869 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.0818 1.1779 0.0000 4 8 1.4043 2.1829 0.0411 5 6 3.5752 1.3288 -0.0466 6 6 4.2445 0.0083 0.3424 7 6 3.5950 -1.1210 -0.4664 8 6 2.1481 -1.2875 -0.0006 9 1 2.1399 -1.7002 1.0083 10 6 1.4307 -2.2317 -0.9306 11 8 0.7006 -1.7938 -1.7945 12 7 1.6003 -3.5625 -0.8024 13 6 0.9033 -4.4803 -1.7070 14 6 1.3315 -5.9176 -1.4045 15 7 1.1126 -6.2058 0.0152 16 6 -0.1530 -6.1592 0.5360 17 1 -0.9758 -5.8172 -0.0742 18 6 -0.3783 -6.5519 1.8482 19 7 0.6246 -6.9685 2.5919 20 14 -2.1048 -6.4891 2.5586 21 1 -2.9997 -7.3672 1.7627 22 1 -2.0775 -6.9564 3.9679 23 1 -2.6097 -5.0934 2.5100 24 6 2.8155 -6.0921 -1.7417 25 6 3.2152 -7.5517 -1.5107 26 8 2.3906 -8.4022 -2.3100 27 6 0.9969 -8.3167 -2.0061 28 6 0.5080 -6.8878 -2.2571 29 1 -0.3633 -0.0002 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5139 32 1 3.8822 2.1092 0.6497 33 1 3.8798 1.6056 -1.0559 34 1 4.1032 -0.1749 1.4076 35 1 5.3097 0.0561 0.1159 36 1 4.1413 -2.0497 -0.3019 37 1 3.6108 -0.8703 -1.5270 38 1 2.1845 -3.9127 -0.1117 39 1 -0.1729 -4.3840 -1.5638 40 1 1.1560 -4.2353 -2.7386 41 1 1.8642 -6.4294 0.5862 42 1 0.4670 -7.2432 3.5088 43 1 2.9852 -5.8288 -2.7858 44 1 3.4134 -5.4447 -1.1001 45 1 3.0835 -7.8024 -0.4582 46 1 4.2596 -7.6911 -1.7899 47 1 0.8361 -8.5775 -0.9601 48 1 0.4432 -9.0073 -2.6423 49 1 -0.5443 -6.8096 -1.9841 50 1 0.6302 -6.6399 -3.3115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724370537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:10 Heat of formation + Delta-G solvation = -100.437779 kcal Electronic energy + Delta-G solvation = -31813.174084 eV Core-core repulsion = 27647.742084 eV Total energy + Delta-G solvation = -4165.432000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01001 -39.62664 -38.80045 -36.38089 -35.85763 -34.19203 -33.53652 -32.32296 -30.71386 -30.26760 -29.26755 -27.28751 -26.81896 -24.94894 -24.14747 -23.09416 -22.42905 -22.14513 -20.37270 -18.89231 -18.64114 -17.57309 -17.20063 -16.73044 -16.51946 -15.76259 -15.64835 -15.43430 -15.31398 -14.91217 -14.64896 -14.38918 -14.36703 -14.10963 -13.83350 -13.65133 -13.64703 -13.23738 -12.76572 -12.56643 -12.32115 -12.22294 -12.16523 -11.88179 -11.75621 -11.60321 -11.49559 -11.23943 -11.12004 -10.98347 -10.96317 -10.86093 -10.45552 -10.12041 -10.00189 -9.83130 -9.78622 -9.58006 -9.28966 -8.88821 -8.75151 -8.53249 -7.20390 -5.96191 -3.27339 2.57109 2.61785 2.97717 3.32655 3.38203 3.39896 3.45923 4.32237 4.35417 4.42394 4.45039 4.51799 4.54835 4.94800 5.02741 5.09360 5.15325 5.18281 5.28268 5.42977 5.43841 5.46443 5.47539 5.54172 5.57472 5.57909 5.70728 5.71180 5.78281 5.89032 5.92404 5.99589 6.02473 6.10342 6.13055 6.23049 6.30665 6.34401 6.44367 6.47935 6.64474 6.70759 6.82407 7.40539 7.55476 7.66240 7.78404 8.12496 8.20825 8.40881 9.33789 9.83133 10.19897 11.25111 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010922 B = 0.003861 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.985452 B = 7250.026452 C = 8645.399234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.580 5.580 3 C 0.517 3.483 4 O -0.558 6.558 5 C -0.135 4.135 6 C -0.121 4.121 7 C -0.126 4.126 8 C 0.125 3.875 9 H 0.100 0.900 10 C 0.500 3.500 11 O -0.540 6.540 12 N -0.692 5.692 13 C 0.118 3.882 14 C 0.189 3.811 15 N -0.712 5.712 16 C -0.240 4.240 17 H 0.069 0.931 18 C -0.003 4.003 19 N -0.929 5.929 20 Si 0.901 3.099 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.150 4.150 25 C 0.066 3.934 26 O -0.393 6.393 27 C 0.070 3.930 28 C -0.152 4.152 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.404 0.596 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.385 0.615 42 H 0.257 0.743 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.748 6.477 -6.004 13.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.312 5.312 3 C 0.305 3.695 4 O -0.437 6.437 5 C -0.175 4.175 6 C -0.159 4.159 7 C -0.164 4.164 8 C 0.017 3.983 9 H 0.118 0.882 10 C 0.285 3.715 11 O -0.418 6.418 12 N -0.342 5.342 13 C -0.009 4.009 14 C 0.097 3.903 15 N -0.355 5.355 16 C -0.371 4.371 17 H 0.087 0.913 18 C -0.200 4.200 19 N -0.576 5.576 20 Si 0.732 3.268 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.188 4.188 25 C -0.011 4.011 26 O -0.312 6.312 27 C -0.007 4.007 28 C -0.192 4.192 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.240 0.760 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.219 0.781 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.099 0.901 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.783 7.150 -6.669 13.143 hybrid contribution -0.764 -0.150 1.264 1.485 sum 8.019 7.000 -5.405 11.938 Atomic orbital electron populations 1.22067 0.78787 1.05386 1.01629 1.46771 1.08063 1.04544 1.71790 1.19995 0.90941 0.82502 0.76035 1.90705 1.66362 1.35677 1.50965 1.21678 0.91256 0.99736 1.04830 1.21660 1.00365 0.93083 1.00794 1.21852 0.92272 1.00926 1.01360 1.20959 0.93022 0.84131 1.00160 0.88187 1.20511 0.82489 0.83385 0.85158 1.90661 1.38612 1.77105 1.35453 1.45746 1.47843 1.04790 1.35813 1.21862 0.97334 0.90151 0.91510 1.19830 0.92273 0.91020 0.87200 1.42476 1.07352 1.83266 1.02361 1.18994 0.86129 1.36828 0.95107 0.91271 1.24687 0.97053 1.01211 0.97008 1.69624 1.29674 1.49670 1.08621 0.86371 0.84454 0.77766 0.78193 1.21192 1.21732 1.21304 1.22348 0.96834 0.97920 1.01743 1.22461 0.93778 0.88999 0.95891 1.87802 1.18086 1.63930 1.61396 1.22450 0.80723 0.95832 1.01648 1.22449 1.01667 0.96506 0.98622 0.93173 0.90528 0.88618 0.88137 0.88280 0.90599 0.89910 0.88858 0.90247 0.75959 0.91531 0.92588 0.78056 0.93341 0.91234 0.91312 0.92176 0.90083 0.91208 0.90388 0.90447 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 9.57 59.84 0.57 1.55 16 2 N -0.58 -8.23 2.95 -176.63 -0.52 -8.75 16 3 C 0.52 7.33 7.45 -12.04 -0.09 7.24 16 4 O -0.56 -9.98 16.18 5.56 0.09 -9.89 16 5 C -0.14 -1.27 6.03 -28.10 -0.17 -1.44 16 6 C -0.12 -0.89 6.03 -26.52 -0.16 -1.05 16 7 C -0.13 -1.11 5.29 -26.60 -0.14 -1.25 16 8 C 0.13 1.52 3.15 -69.53 -0.22 1.30 16 9 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 10 C 0.50 7.45 6.24 -10.99 -0.07 7.39 16 11 O -0.54 -9.81 14.07 5.55 0.08 -9.73 16 12 N -0.69 -10.05 5.13 -60.30 -0.31 -10.36 16 13 C 0.12 1.88 4.36 -4.04 -0.02 1.86 16 14 C 0.19 3.02 0.41 -131.63 -0.05 2.97 16 15 N -0.71 -13.97 3.61 -47.06 -0.17 -14.14 16 16 C -0.24 -5.57 8.67 -15.06 -0.13 -5.70 16 17 H 0.07 1.63 6.78 -52.49 -0.36 1.28 16 18 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 19 N -0.93 -24.66 13.07 55.49 0.73 -23.93 16 20 Si 0.90 20.78 29.55 -169.99 -5.02 15.75 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.15 -2.03 4.80 -26.59 -0.13 -2.16 16 25 C 0.07 0.95 6.67 37.20 0.25 1.20 16 26 O -0.39 -6.46 10.77 -35.23 -0.38 -6.84 16 27 C 0.07 1.15 6.68 37.20 0.25 1.40 16 28 C -0.15 -2.45 4.78 -26.59 -0.13 -2.57 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.24 7.18 -51.93 -0.37 0.87 16 31 H 0.10 1.60 5.00 -51.93 -0.26 1.34 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 38 H 0.40 5.56 7.43 -40.82 -0.30 5.26 16 39 H 0.07 1.23 7.47 -51.93 -0.39 0.85 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.38 8.14 6.82 -40.82 -0.28 7.86 16 42 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.83 7.40 -51.93 -0.38 0.45 16 45 H 0.06 0.98 7.15 -51.93 -0.37 0.61 16 46 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.07 1.35 7.75 -51.93 -0.40 0.95 16 48 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 49 H 0.08 1.35 7.20 -51.93 -0.37 0.97 16 50 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -30.28 386.57 -8.13 -38.42 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -8.12 Total: 13.09 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -0.33 Total: 10.56 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.27 Total: -57.19 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.21 Total: -26.46 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.28 -8.13 -38.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724370537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.020 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds