Wall clock time and date at job start Sat Apr 11 2020 05:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.32964 * 117.64211 * 2 1 4 4 O 1.21275 * 118.35619 * 2.20461 * 3 2 1 5 5 C 1.50178 * 123.39514 * 182.12799 * 3 2 1 6 6 C 1.53067 * 109.89010 * 342.47408 * 5 3 2 7 7 C 1.53342 * 108.42978 * 48.89906 * 6 5 3 8 8 C 1.45755 * 117.95053 * 180.02562 * 2 1 3 9 9 H 1.08999 * 109.29973 * 281.23555 * 8 2 1 10 10 C 1.50700 * 109.30237 * 40.81462 * 8 2 1 11 11 O 1.21286 * 119.99390 * 20.41778 * 10 8 2 12 12 N 1.34769 * 120.00329 * 200.42087 * 10 8 2 13 13 C 1.46502 * 120.00094 * 180.02562 * 12 10 8 14 14 C 1.52994 * 109.47130 * 176.60619 * 13 12 10 15 15 N 1.46506 * 109.54654 * 54.53343 * 14 13 12 16 16 C 1.36936 * 119.99463 * 62.04126 * 15 14 13 17 17 H 1.08002 * 120.00455 * 354.03259 * 16 15 14 18 18 C 1.38811 * 119.99596 * 174.02336 * 16 15 14 19 19 N 1.31620 * 120.00147 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00049 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46864 * 60.00409 * 20 18 16 22 22 H 1.48506 * 109.47098 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47307 * 300.00347 * 20 18 16 24 24 C 1.53178 * 109.54751 * 294.26702 * 14 13 12 25 25 C 1.53089 * 109.16799 * 183.15207 * 24 14 13 26 26 O 1.42904 * 109.41395 * 57.60721 * 25 24 14 27 27 C 1.42899 * 114.09582 * 298.84338 * 26 25 24 28 28 C 1.53091 * 109.41814 * 61.16212 * 27 26 25 29 29 H 1.09003 * 109.47090 * 269.99062 * 1 2 3 30 30 H 1.09004 * 109.47618 * 29.99355 * 1 2 3 31 31 H 1.09001 * 109.47107 * 149.99459 * 1 2 3 32 32 H 1.08995 * 109.40243 * 222.34132 * 5 3 2 33 33 H 1.09002 * 109.39754 * 102.59796 * 5 3 2 34 34 H 1.09003 * 109.67447 * 289.16074 * 6 5 3 35 35 H 1.09001 * 109.67149 * 168.63244 * 6 5 3 36 36 H 1.08996 * 109.60883 * 172.70920 * 7 6 5 37 37 H 1.09002 * 109.73494 * 52.30173 * 7 6 5 38 38 H 0.97001 * 119.99833 * 359.97438 * 12 10 8 39 39 H 1.08995 * 109.46875 * 296.60889 * 13 12 10 40 40 H 1.08999 * 109.46826 * 56.60577 * 13 12 10 41 41 H 0.96999 * 120.00382 * 242.05451 * 15 14 13 42 42 H 0.96998 * 120.00007 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.52364 * 303.06260 * 24 14 13 44 44 H 1.09004 * 109.52422 * 63.24356 * 24 14 13 45 45 H 1.08996 * 109.48074 * 297.62829 * 25 24 14 46 46 H 1.09002 * 109.48027 * 177.59207 * 25 24 14 47 47 H 1.08994 * 109.48635 * 301.17092 * 27 26 25 48 48 H 1.09007 * 109.47671 * 181.14188 * 27 26 25 49 49 H 1.08994 * 109.52739 * 182.48402 * 28 27 26 50 50 H 1.09001 * 109.57710 * 62.31869 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.0818 1.1779 0.0000 4 8 1.4043 2.1829 0.0411 5 6 3.5752 1.3288 -0.0466 6 6 4.2445 0.0083 0.3424 7 6 3.5950 -1.1210 -0.4664 8 6 2.1481 -1.2875 -0.0006 9 1 2.1399 -1.7002 1.0083 10 6 1.4307 -2.2317 -0.9306 11 8 0.7006 -1.7938 -1.7945 12 7 1.6003 -3.5625 -0.8024 13 6 0.9033 -4.4803 -1.7070 14 6 1.3315 -5.9176 -1.4045 15 7 1.1126 -6.2058 0.0152 16 6 -0.1530 -6.1592 0.5360 17 1 -0.9758 -5.8172 -0.0742 18 6 -0.3783 -6.5519 1.8482 19 7 0.6246 -6.9685 2.5919 20 14 -2.1048 -6.4891 2.5586 21 1 -2.9997 -7.3672 1.7627 22 1 -2.0775 -6.9564 3.9679 23 1 -2.6097 -5.0934 2.5100 24 6 2.8155 -6.0921 -1.7417 25 6 3.2152 -7.5517 -1.5107 26 8 2.3906 -8.4022 -2.3100 27 6 0.9969 -8.3167 -2.0061 28 6 0.5080 -6.8878 -2.2571 29 1 -0.3633 -0.0002 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5139 32 1 3.8822 2.1092 0.6497 33 1 3.8798 1.6056 -1.0559 34 1 4.1032 -0.1749 1.4076 35 1 5.3097 0.0561 0.1159 36 1 4.1413 -2.0497 -0.3019 37 1 3.6108 -0.8703 -1.5270 38 1 2.1845 -3.9127 -0.1117 39 1 -0.1729 -4.3840 -1.5638 40 1 1.1560 -4.2353 -2.7386 41 1 1.8642 -6.4294 0.5862 42 1 0.4670 -7.2432 3.5088 43 1 2.9852 -5.8288 -2.7858 44 1 3.4134 -5.4447 -1.1001 45 1 3.0835 -7.8024 -0.4582 46 1 4.2596 -7.6911 -1.7899 47 1 0.8361 -8.5775 -0.9601 48 1 0.4432 -9.0073 -2.6423 49 1 -0.5443 -6.8096 -1.9841 50 1 0.6302 -6.6399 -3.3115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724370537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:08 Heat of formation + Delta-G solvation = -122.004484 kcal Electronic energy + Delta-G solvation = -31814.109287 eV Core-core repulsion = 27647.742084 eV Total energy + Delta-G solvation = -4166.367203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.10137 -40.89932 -40.04467 -37.53487 -37.11164 -35.35073 -34.83328 -33.87355 -31.94910 -31.28012 -30.90509 -28.38949 -28.02810 -26.07315 -25.77237 -24.38417 -23.44598 -23.22312 -21.59611 -20.17311 -19.68879 -19.11287 -18.58019 -17.80991 -17.58203 -17.12987 -16.86760 -16.65444 -16.58632 -16.16719 -16.00538 -15.79080 -15.44068 -15.29381 -15.23188 -14.92451 -14.50139 -14.39049 -14.12238 -13.82526 -13.66964 -13.49365 -13.18423 -13.11679 -12.96783 -12.82461 -12.72137 -12.67719 -12.56483 -12.25674 -12.08147 -11.97751 -11.83480 -11.73951 -11.38761 -11.19581 -11.10894 -10.96435 -10.68125 -10.30564 -10.01066 -9.75425 -8.95865 -7.90370 -5.15923 1.42904 1.45698 1.49516 1.51637 1.51880 1.89975 2.30710 2.57025 3.10921 3.42780 3.47970 3.60152 3.67144 3.78539 3.85837 3.90822 3.99984 4.06650 4.18365 4.20713 4.27347 4.34458 4.50248 4.51749 4.56695 4.63160 4.76141 4.78963 4.80114 4.83761 4.85421 4.86065 4.92399 4.96194 5.02370 5.07046 5.12951 5.21943 5.25044 5.29734 5.30408 5.37642 5.54110 5.64009 6.31773 6.33878 6.40362 6.59577 7.03295 7.22362 7.42221 8.10651 8.38009 9.31138 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010922 B = 0.003861 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.985452 B = 7250.026452 C = 8645.399234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.584 5.584 3 C 0.507 3.493 4 O -0.604 6.604 5 C -0.129 4.129 6 C -0.112 4.112 7 C -0.122 4.122 8 C 0.126 3.874 9 H 0.112 0.888 10 C 0.500 3.500 11 O -0.576 6.576 12 N -0.686 5.686 13 C 0.127 3.873 14 C 0.187 3.813 15 N -0.710 5.710 16 C -0.213 4.213 17 H 0.063 0.937 18 C -0.054 4.054 19 N -0.955 5.955 20 Si 0.942 3.058 21 H -0.286 1.286 22 H -0.301 1.301 23 H -0.291 1.291 24 C -0.141 4.141 25 C 0.062 3.938 26 O -0.399 6.399 27 C 0.076 3.924 28 C -0.151 4.151 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.074 0.926 38 H 0.411 0.589 39 H 0.035 0.965 40 H 0.068 0.932 41 H 0.379 0.621 42 H 0.248 0.752 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.037 0.963 46 H 0.112 0.888 47 H 0.035 0.965 48 H 0.095 0.905 49 H 0.058 0.942 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.534 6.718 -7.011 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.315 5.315 3 C 0.298 3.702 4 O -0.487 6.487 5 C -0.169 4.169 6 C -0.150 4.150 7 C -0.160 4.160 8 C 0.019 3.981 9 H 0.130 0.870 10 C 0.286 3.714 11 O -0.457 6.457 12 N -0.336 5.336 13 C 0.000 4.000 14 C 0.097 3.903 15 N -0.352 5.352 16 C -0.345 4.345 17 H 0.081 0.919 18 C -0.247 4.247 19 N -0.606 5.606 20 Si 0.774 3.226 21 H -0.213 1.213 22 H -0.227 1.227 23 H -0.218 1.218 24 C -0.179 4.179 25 C -0.014 4.014 26 O -0.318 6.318 27 C -0.001 4.001 28 C -0.191 4.191 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.099 0.901 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.093 0.907 38 H 0.248 0.752 39 H 0.053 0.947 40 H 0.086 0.914 41 H 0.213 0.787 42 H 0.057 0.943 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.056 0.944 46 H 0.130 0.870 47 H 0.053 0.947 48 H 0.113 0.887 49 H 0.077 0.923 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.591 7.373 -7.704 15.750 hybrid contribution -1.667 -0.219 1.464 2.229 sum 9.925 7.154 -6.240 13.734 Atomic orbital electron populations 1.21883 0.80445 1.03855 1.01391 1.46939 1.07447 1.05695 1.71430 1.21005 0.93019 0.81556 0.74635 1.90678 1.67857 1.37111 1.53048 1.21755 0.87301 1.01659 1.06141 1.21682 1.01747 0.90788 1.00736 1.21947 0.89776 1.02995 1.01234 1.21181 0.94589 0.82380 0.99999 0.87020 1.21021 0.81871 0.83585 0.84937 1.90652 1.40182 1.77654 1.37183 1.45674 1.47602 1.04651 1.35674 1.21665 0.95661 0.90181 0.92486 1.20014 0.94553 0.90804 0.84973 1.42477 1.05792 1.82887 1.04007 1.19109 0.87364 1.33573 0.94430 0.91863 1.25097 0.98721 1.02998 0.97925 1.69713 1.30468 1.52059 1.08330 0.85697 0.82535 0.77184 0.77135 1.21255 1.22715 1.21789 1.22307 0.94575 0.97745 1.03277 1.22614 0.95083 0.89171 0.94540 1.87802 1.17810 1.64652 1.61558 1.22339 0.81454 0.96379 0.99928 1.22424 1.00448 0.96352 0.99847 0.92786 0.91980 0.90080 0.86857 0.86881 0.90106 0.86525 0.86166 0.90697 0.75208 0.94658 0.91399 0.78685 0.94321 0.89341 0.89330 0.94428 0.87001 0.94666 0.88697 0.92313 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.15 9.57 127.77 1.22 3.37 16 2 N -0.58 -16.24 2.95 -832.13 -2.45 -18.69 16 3 C 0.51 13.95 7.45 87.77 0.65 14.61 16 4 O -0.60 -21.89 16.18 -3.02 -0.05 -21.93 16 5 C -0.13 -2.05 6.03 29.71 0.18 -1.87 16 6 C -0.11 -1.16 6.03 30.73 0.19 -0.97 16 7 C -0.12 -1.68 5.29 30.68 0.16 -1.52 16 8 C 0.13 2.80 3.15 44.36 0.14 2.94 16 9 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 10 C 0.50 14.33 6.24 87.66 0.55 14.87 16 11 O -0.58 -20.89 14.07 -3.05 -0.04 -20.93 16 12 N -0.69 -18.80 5.13 -463.08 -2.38 -21.17 16 13 C 0.13 3.88 4.36 86.38 0.38 4.25 16 14 C 0.19 5.69 0.41 3.72 0.00 5.69 16 15 N -0.71 -27.46 3.61 -302.80 -1.09 -28.55 16 16 C -0.21 -9.91 8.67 84.03 0.73 -9.18 16 17 H 0.06 3.02 6.78 -2.91 -0.02 3.00 16 18 C -0.05 -2.74 5.50 84.86 0.47 -2.28 16 19 N -0.96 -51.33 13.07 21.65 0.28 -51.04 16 20 Si 0.94 43.40 29.55 68.60 2.03 45.42 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 C -0.14 -3.36 4.80 30.68 0.15 -3.21 16 25 C 0.06 1.64 6.67 72.01 0.48 2.12 16 26 O -0.40 -12.24 10.77 -148.98 -1.60 -13.84 16 27 C 0.08 2.42 6.68 72.01 0.48 2.90 16 28 C -0.15 -4.65 4.78 30.69 0.15 -4.50 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 2.12 7.18 -2.38 -0.02 2.10 16 31 H 0.08 2.82 5.00 -2.39 -0.01 2.81 16 32 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 0.82 8.13 -2.39 -0.02 0.80 16 35 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 38 H 0.41 10.33 7.43 -92.71 -0.69 9.64 16 39 H 0.03 1.31 7.47 -2.39 -0.02 1.29 16 40 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.38 15.79 6.82 -92.71 -0.63 15.16 16 42 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 43 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.09 1.79 7.40 -2.38 -0.02 1.77 16 45 H 0.04 1.17 7.15 -2.39 -0.02 1.15 16 46 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.03 1.37 7.75 -2.39 -0.02 1.35 16 48 H 0.09 2.66 8.14 -2.38 -0.02 2.65 16 49 H 0.06 2.03 7.20 -2.39 -0.02 2.01 16 50 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -68.24 386.57 0.25 -67.99 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: -0.36 Total: 35.53 kcal Atomic # 6 Polarization: 21.31 SS G_CDS: 5.92 Total: 27.23 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -5.64 Total: -119.46 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -1.70 Total: -56.71 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -68.24 0.25 -67.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724370537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.013 kcal (2) G-P(sol) polarization free energy of solvation -68.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds