Wall clock time and date at job start Sat Apr 11 2020 05:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46762 * 124.35003 * 2 1 4 4 C 1.54663 * 105.38356 * 162.85677 * 3 2 1 5 5 C 1.54625 * 101.68159 * 25.77128 * 4 3 2 6 6 H 1.08999 * 110.59928 * 93.72086 * 5 4 3 7 7 C 1.53004 * 110.48553 * 216.30858 * 5 4 3 8 8 C 1.50704 * 109.47315 * 181.22739 * 7 5 4 9 9 O 1.21284 * 119.99445 * 359.97438 * 8 7 5 10 10 N 1.34771 * 120.00299 * 179.97438 * 8 7 5 11 11 C 1.46493 * 120.00246 * 174.88258 * 10 8 7 12 12 C 1.52994 * 109.49728 * 302.88700 * 11 10 8 13 13 O 1.42900 * 109.47269 * 300.68999 * 12 11 10 14 14 C 1.53046 * 109.49671 * 62.95089 * 11 10 8 15 15 C 1.53106 * 109.50309 * 58.62102 * 14 11 10 16 16 C 1.53192 * 109.33162 * 61.34003 * 15 14 11 17 17 N 1.46923 * 108.77677 * 305.36699 * 16 15 14 18 18 C 1.36941 * 120.62747 * 233.58373 * 17 16 15 19 19 H 1.08001 * 120.00008 * 31.70735 * 18 17 16 20 20 C 1.38813 * 119.99961 * 211.70258 * 18 17 16 21 21 N 1.31619 * 119.99865 * 11.01841 * 20 18 17 22 22 Si 1.86792 * 120.00125 * 191.01305 * 20 18 17 23 23 H 1.48499 * 109.47375 * 90.00389 * 22 20 18 24 24 H 1.48501 * 109.46982 * 210.00300 * 22 20 18 25 25 H 1.48499 * 109.47358 * 330.00278 * 22 20 18 26 26 C 1.46923 * 118.74237 * 53.60826 * 17 16 15 27 27 C 1.34417 * 124.34955 * 180.30852 * 2 1 3 28 28 O 1.21284 * 124.94494 * 0.41983 * 27 2 1 29 29 H 1.08996 * 109.46901 * 179.72130 * 1 2 3 30 30 H 1.09005 * 109.46490 * 299.72143 * 1 2 3 31 31 H 1.08993 * 109.47474 * 59.71755 * 1 2 3 32 32 H 1.09000 * 110.25356 * 281.99038 * 3 2 1 33 33 H 1.09004 * 110.24376 * 43.98941 * 3 2 1 34 34 H 1.09002 * 111.19277 * 267.59744 * 4 3 2 35 35 H 1.08994 * 110.85301 * 143.79518 * 4 3 2 36 36 H 1.09001 * 109.46804 * 301.22576 * 7 5 4 37 37 H 1.08996 * 109.47168 * 61.22682 * 7 5 4 38 38 H 0.97008 * 119.99625 * 354.88362 * 10 8 7 39 39 H 1.09004 * 109.47351 * 60.69171 * 12 11 10 40 40 H 1.09004 * 109.47213 * 180.69521 * 12 11 10 41 41 H 0.96696 * 114.00197 * 180.02562 * 13 12 11 42 42 H 1.09000 * 109.45742 * 178.60607 * 14 11 10 43 43 H 1.09001 * 109.45593 * 298.56585 * 14 11 10 44 44 H 1.09005 * 109.48969 * 301.38619 * 15 14 11 45 45 H 1.08997 * 109.51370 * 181.31420 * 15 14 11 46 46 H 1.09006 * 109.58684 * 185.57400 * 16 15 14 47 47 H 1.08999 * 109.70002 * 65.22157 * 16 15 14 48 48 H 0.96999 * 120.00538 * 179.97438 * 21 20 18 49 49 H 1.09000 * 109.59028 * 186.60320 * 26 17 16 50 50 H 1.09000 * 109.70572 * 66.24406 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7011 0.7464 0.4396 5 6 3.6898 -0.7378 0.0061 6 1 4.1200 -0.8499 -0.9892 7 6 4.4518 -1.5968 1.0172 8 6 4.4524 -3.0321 0.5577 9 8 3.8975 -3.3378 -0.4765 10 7 5.0695 -3.9758 1.2960 11 6 4.9754 -5.3857 0.9096 12 6 3.5039 -5.7988 0.8396 13 8 2.8919 -5.5992 2.1154 14 6 5.6275 -5.5845 -0.4606 15 6 7.0914 -5.1403 -0.3992 16 6 7.8402 -6.0013 0.6229 17 7 7.1338 -5.9300 1.9092 18 6 7.7991 -5.5731 3.0517 19 1 8.6277 -4.8823 3.0006 20 6 7.4085 -6.0991 4.2754 21 7 6.5511 -7.0969 4.3194 22 14 8.0996 -5.3912 5.8598 23 1 7.2229 -4.2904 6.3340 24 1 8.1597 -6.4561 6.8930 25 1 9.4656 -4.8642 5.6121 26 6 5.7002 -6.2495 1.9466 27 6 2.2234 -1.1097 -0.0060 28 8 1.7946 -2.2442 -0.0194 29 1 -0.3633 -1.0276 -0.0050 30 1 -0.3632 0.5095 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 2.3306 1.6431 -1.0003 33 1 1.8984 1.9382 0.7103 34 1 3.8269 0.8367 1.5185 35 1 4.4758 1.3014 -0.0893 36 1 5.4788 -1.2401 1.0960 37 1 3.9673 -1.5273 1.9911 38 1 5.5760 -3.7213 2.0832 39 1 2.9916 -5.1930 0.0921 40 1 3.4347 -6.8512 0.5641 41 1 1.9561 -5.8413 2.1449 42 1 5.5791 -6.6379 -0.7363 43 1 5.0976 -4.9898 -1.2046 44 1 7.1416 -4.0935 -0.0994 45 1 7.5497 -5.2599 -1.3809 46 1 8.8564 -5.6255 0.7427 47 1 7.8711 -7.0354 0.2799 48 1 6.2784 -7.4648 5.1744 49 1 5.3043 -6.0375 2.9398 50 1 5.5523 -7.3036 1.7117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724635826.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:31 Heat of formation + Delta-G solvation = -115.259362 kcal Electronic energy + Delta-G solvation = -32319.301780 eV Core-core repulsion = 28153.227068 eV Total energy + Delta-G solvation = -4166.074712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.72604 -40.91333 -38.76421 -37.35938 -37.28292 -35.34285 -34.63193 -34.10645 -32.10023 -31.52087 -30.22821 -27.81242 -27.30393 -26.62989 -26.18679 -23.95671 -22.71093 -22.21989 -21.51280 -20.12836 -19.97105 -18.77016 -18.20202 -18.11240 -17.60637 -17.35721 -16.84995 -16.42278 -16.25872 -15.85471 -15.68936 -15.34239 -15.14033 -14.74530 -14.65679 -14.56092 -14.46431 -14.13726 -13.92581 -13.85329 -13.52044 -13.39274 -13.19257 -13.12627 -12.96337 -12.82930 -12.73278 -12.63987 -12.50769 -12.24144 -12.17583 -11.93188 -11.78769 -11.65307 -11.44503 -11.17390 -11.01627 -10.58526 -10.51968 -10.15430 -9.63070 -9.59100 -8.59181 -7.81365 -5.33857 1.51171 1.51535 1.60626 1.71822 2.00903 2.19159 2.49435 2.54572 3.34007 3.35119 3.46050 3.56020 3.68678 3.86775 3.98714 4.13142 4.20863 4.27763 4.29696 4.36350 4.40593 4.43116 4.49340 4.54383 4.63209 4.66403 4.70084 4.78202 4.84574 4.85115 4.88002 4.91847 4.98217 5.01391 5.13312 5.15754 5.22933 5.27298 5.36694 5.52245 5.67154 5.70809 5.78685 5.90925 6.20891 6.45529 6.86370 6.95012 7.18482 7.35390 7.62456 7.87312 8.43227 9.23971 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013788 B = 0.003659 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.305228 B = 7650.118907 C = 8112.808389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.635 5.635 3 C 0.100 3.900 4 C -0.118 4.118 5 C -0.101 4.101 6 H 0.107 0.893 7 C -0.120 4.120 8 C 0.504 3.496 9 O -0.554 6.554 10 N -0.696 5.696 11 C 0.166 3.834 12 C 0.076 3.924 13 O -0.576 6.576 14 C -0.114 4.114 15 C -0.112 4.112 16 C 0.140 3.860 17 N -0.603 5.603 18 C -0.260 4.260 19 H 0.072 0.928 20 C -0.045 4.045 21 N -0.933 5.933 22 Si 0.967 3.033 23 H -0.283 1.283 24 H -0.302 1.302 25 H -0.266 1.266 26 C 0.197 3.803 27 C 0.499 3.501 28 O -0.554 6.554 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.091 0.909 38 H 0.400 0.600 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.383 0.617 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.010 0.990 48 H 0.247 0.753 49 H 0.067 0.933 50 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.402 19.723 -8.994 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.371 5.371 3 C -0.021 4.021 4 C -0.155 4.155 5 C -0.123 4.123 6 H 0.125 0.875 7 C -0.160 4.160 8 C 0.291 3.709 9 O -0.433 6.433 10 N -0.346 5.346 11 C 0.077 3.923 12 C -0.003 4.003 13 O -0.382 6.382 14 C -0.152 4.152 15 C -0.151 4.151 16 C 0.015 3.985 17 N -0.326 5.326 18 C -0.391 4.391 19 H 0.089 0.911 20 C -0.241 4.241 21 N -0.579 5.579 22 Si 0.796 3.204 23 H -0.210 1.210 24 H -0.229 1.229 25 H -0.190 1.190 26 C 0.070 3.930 27 C 0.287 3.713 28 O -0.431 6.431 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.110 0.890 38 H 0.235 0.765 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.231 0.769 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.028 0.972 48 H 0.057 0.943 49 H 0.086 0.914 50 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges -7.555 19.026 -9.438 22.542 hybrid contribution -0.434 -0.812 1.186 1.502 sum -7.989 18.214 -8.252 21.533 Atomic orbital electron populations 1.21599 0.77891 1.02496 1.03031 1.48418 1.07056 1.07934 1.73659 1.22366 0.90042 0.86322 1.03391 1.22809 0.97490 0.91394 1.03811 1.21699 0.91907 0.97320 1.01405 0.87466 1.21579 1.04183 0.90491 0.99755 1.20984 0.77498 0.88522 0.83903 1.90610 1.44678 1.82917 1.25102 1.45784 1.52868 1.05708 1.30253 1.20874 0.92489 0.82639 0.96295 1.22473 0.94053 0.98507 0.85301 1.86506 1.28927 1.89902 1.32862 1.21695 0.96841 1.00858 0.95817 1.21774 0.94431 0.99812 0.99059 1.21100 0.95284 0.96092 0.86063 1.44204 1.04325 1.80097 1.03939 1.19473 1.14257 1.19867 0.85454 0.91074 1.25917 1.00091 0.96521 1.01521 1.70151 1.37084 1.26053 1.24563 0.85275 0.78647 0.77049 0.79475 1.20997 1.22862 1.19028 1.20543 0.83240 0.92317 0.96873 1.21406 0.90547 0.84316 0.75064 1.90752 1.79043 1.23014 1.50296 0.92840 0.90273 0.90359 0.89555 0.88052 0.88646 0.86053 0.85373 0.89025 0.76543 0.92811 0.93801 0.76947 0.92391 0.91201 0.92497 0.90521 0.92253 0.97172 0.94338 0.91427 0.98590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.54 11.14 127.77 1.42 2.96 16 2 N -0.64 -12.79 3.33 -842.53 -2.81 -15.59 16 3 C 0.10 1.05 7.36 86.90 0.64 1.69 16 4 C -0.12 -1.24 6.71 31.71 0.21 -1.03 16 5 C -0.10 -2.19 2.57 -10.80 -0.03 -2.22 16 6 H 0.11 2.44 8.02 -2.39 -0.02 2.42 16 7 C -0.12 -2.98 5.13 29.85 0.15 -2.83 16 8 C 0.50 17.84 6.68 87.66 0.59 18.42 16 9 O -0.55 -22.61 9.96 18.99 0.19 -22.42 16 10 N -0.70 -26.92 4.04 -422.57 -1.71 -28.62 16 11 C 0.17 6.92 0.45 3.68 0.00 6.92 16 12 C 0.08 3.11 5.68 71.98 0.41 3.52 16 13 O -0.58 -23.88 12.98 -148.98 -1.93 -25.81 16 14 C -0.11 -4.34 4.52 30.65 0.14 -4.20 16 15 C -0.11 -3.98 5.93 30.69 0.18 -3.80 16 16 C 0.14 5.84 6.52 86.36 0.56 6.41 16 17 N -0.60 -29.76 2.85 -699.09 -1.99 -31.75 16 18 C -0.26 -13.77 9.58 84.03 0.80 -12.96 16 19 H 0.07 3.61 7.85 -2.91 -0.02 3.59 16 20 C -0.04 -2.44 5.04 84.86 0.43 -2.01 16 21 N -0.93 -55.35 11.10 21.65 0.24 -55.11 16 22 Si 0.97 43.96 29.57 68.60 2.03 45.99 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 26 C 0.20 9.81 3.75 86.36 0.32 10.13 16 27 C 0.50 14.45 7.29 87.90 0.64 15.09 16 28 O -0.55 -22.32 14.51 18.98 0.28 -22.04 16 29 H 0.05 1.20 7.53 -2.39 -0.02 1.19 16 30 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.10 0.60 8.14 -2.38 -0.02 0.59 16 34 H 0.09 0.86 7.91 -2.39 -0.02 0.85 16 35 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.40 16.01 8.43 -92.70 -0.78 15.23 16 39 H 0.05 2.34 6.16 -2.38 -0.01 2.33 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.38 12.30 9.12 -74.06 -0.68 11.62 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 43 H 0.07 2.73 6.26 -2.39 -0.01 2.71 16 44 H 0.06 2.04 7.53 -2.38 -0.02 2.02 16 45 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.06 2.37 7.93 -2.38 -0.02 2.35 16 47 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 49 H 0.07 3.87 5.88 -2.39 -0.01 3.85 16 50 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 Total: -1.00 -79.01 386.63 0.27 -78.74 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: -0.50 Total: 40.51 kcal Atomic # 6 Polarization: 29.63 SS G_CDS: 6.48 Total: 36.11 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -6.26 Total: -131.07 kcal Atomic # 8 Polarization: -68.80 SS G_CDS: -1.47 Total: -70.27 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -79.01 0.27 -78.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724635826.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.522 kcal (2) G-P(sol) polarization free energy of solvation -79.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds