Wall clock time and date at job start Sat Apr 11 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 O 1.21287 * 120.00070 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00136 * 180.02562 * 4 3 2 7 7 C 1.46928 * 120.63127 * 0.02562 * 6 4 3 8 8 C 1.53200 * 108.77670 * 126.36818 * 7 6 4 9 9 C 1.53039 * 109.31098 * 54.63393 * 8 7 6 10 10 C 1.53032 * 109.54202 * 298.63725 * 9 8 7 11 11 C 1.52999 * 109.50031 * 181.35009 * 10 9 8 12 12 O 1.42904 * 109.47435 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.49811 * 301.41299 * 10 9 8 14 14 C 1.36942 * 120.00288 * 179.97438 * 13 10 9 15 15 H 1.07992 * 119.99679 * 0.02562 * 14 13 10 16 16 C 1.38813 * 119.99822 * 180.02562 * 14 13 10 17 17 N 1.31624 * 119.99692 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00213 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46995 * 90.00367 * 18 16 14 20 20 H 1.48504 * 109.47104 * 209.99734 * 18 16 14 21 21 H 1.48494 * 109.47366 * 330.00203 * 18 16 14 22 22 C 1.46927 * 120.63214 * 179.72047 * 6 4 3 23 23 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 24 24 O 1.21283 * 119.99750 * 180.02562 * 23 2 1 25 25 C 1.50702 * 119.99928 * 0.28128 * 23 2 1 26 26 C 1.53003 * 117.49581 * 248.34706 * 25 23 2 27 27 C 1.52996 * 117.49493 * 179.72213 * 25 23 2 28 28 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 29 29 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 30 30 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 32 32 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 33 33 H 1.08997 * 109.58786 * 246.15212 * 7 6 4 34 34 H 1.08997 * 109.58364 * 6.44232 * 7 6 4 35 35 H 1.08992 * 109.49438 * 174.58974 * 8 7 6 36 36 H 1.08994 * 109.49424 * 294.65401 * 8 7 6 37 37 H 1.09004 * 109.45852 * 58.65607 * 9 8 7 38 38 H 1.09002 * 109.46060 * 178.61159 * 9 8 7 39 39 H 1.09000 * 109.47091 * 300.00008 * 11 10 9 40 40 H 1.08997 * 109.47356 * 59.99640 * 11 10 9 41 41 H 0.96695 * 114.00113 * 179.97438 * 12 11 10 42 42 H 0.97001 * 120.00063 * 0.02562 * 13 10 9 43 43 H 0.96995 * 119.99678 * 179.97438 * 17 16 14 44 44 H 1.08995 * 109.58656 * 353.41725 * 22 6 4 45 45 H 1.09000 * 109.58749 * 113.84348 * 22 6 4 46 46 H 1.09003 * 115.54961 * 34.04814 * 25 23 2 47 47 H 1.08996 * 117.49883 * 359.97438 * 26 25 23 48 48 H 1.08991 * 117.49812 * 145.02342 * 26 25 23 49 49 H 1.09006 * 117.49371 * 214.97326 * 27 25 23 50 50 H 1.08996 * 117.50542 * 359.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 8 2.0543 1.0213 -2.3427 6 7 3.1115 2.8510 -1.6671 7 6 3.5959 3.6881 -0.5610 8 6 5.0935 3.9453 -0.7565 9 6 5.3272 4.5428 -2.1459 10 6 4.8641 3.5501 -3.2145 11 6 5.1292 4.1344 -4.6035 12 8 4.6971 3.2067 -5.6009 13 7 5.5997 2.2921 -3.0648 14 6 5.3517 1.2483 -3.9159 15 1 4.6141 1.3528 -4.6978 16 6 6.0483 0.0562 -3.7736 17 7 5.8102 -0.9469 -4.5920 18 14 7.3247 -0.1242 -2.4217 19 1 6.6740 -0.6461 -1.1931 20 1 8.3817 -1.0700 -2.8618 21 1 7.9330 1.1998 -2.1354 22 6 3.3694 3.2852 -3.0469 23 6 2.1390 -1.1672 0.0005 24 8 3.3518 -1.1671 0.0010 25 6 1.3855 -2.4723 -0.0053 26 6 1.4607 -3.3370 1.2547 27 6 2.2078 -3.7625 -0.0110 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 3.0595 4.6369 -0.5587 34 1 3.4320 3.1732 0.3856 35 1 5.4449 4.6431 0.0035 36 1 5.6386 3.0057 -0.6676 37 1 4.7620 5.4699 -2.2423 38 1 6.3892 4.7498 -2.2782 39 1 4.5808 5.0698 -4.7149 40 1 6.1963 4.3227 -4.7209 41 1 4.8346 3.5121 -6.5080 42 1 6.2620 2.1981 -2.3623 43 1 6.2973 -1.7798 -4.4929 44 1 3.0584 2.5036 -3.7400 45 1 2.8140 4.2004 -3.2518 46 1 0.4472 -2.4709 -0.5599 47 1 2.0554 -2.9620 2.0876 48 1 0.5717 -3.9047 1.5293 49 1 1.8100 -4.6103 -0.5690 50 1 3.2936 -3.6675 -0.0109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724905362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:45 Heat of formation + Delta-G solvation = -84.338823 kcal Electronic energy + Delta-G solvation = -32557.379383 eV Core-core repulsion = 28392.645487 eV Total energy + Delta-G solvation = -4164.733897 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.64557 -40.84764 -39.28225 -37.28250 -37.10020 -36.44789 -35.65350 -34.02638 -32.67851 -31.31938 -30.16881 -27.61590 -26.76639 -26.41209 -25.29073 -24.41205 -23.36844 -22.95239 -21.09941 -20.04244 -19.72308 -19.56690 -18.61080 -18.29073 -17.90349 -17.49247 -16.81293 -16.64238 -16.27661 -16.06428 -15.89303 -15.64032 -15.43121 -15.00763 -14.88917 -14.59520 -14.56337 -14.19126 -13.98640 -13.81295 -13.64695 -13.58515 -13.46667 -13.20538 -13.07894 -12.86058 -12.77766 -12.58705 -12.50561 -12.11494 -11.93076 -11.78452 -11.58980 -11.46128 -11.44806 -11.36137 -11.06190 -10.96339 -10.86653 -10.59496 -9.70880 -9.56972 -9.06842 -7.87569 -5.16359 1.18139 1.30345 1.34128 1.36831 1.74041 1.87840 2.33521 2.52370 2.84865 3.33251 3.48999 3.51989 3.63041 3.68436 3.76097 3.90728 3.92976 4.05009 4.08804 4.14582 4.17630 4.25419 4.27942 4.34710 4.51994 4.58993 4.62929 4.66076 4.71036 4.73815 4.78609 4.79883 4.87752 4.90142 5.00330 5.01307 5.01861 5.15455 5.16085 5.34134 5.42757 5.43910 5.74775 6.09197 6.26457 6.41011 6.58012 7.09708 7.11139 7.28980 7.37942 7.97495 8.10840 9.35804 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010896 B = 0.005100 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.053457 B = 5488.930583 C = 6718.146774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.598 5.598 3 C 0.104 3.896 4 C 0.484 3.516 5 O -0.581 6.581 6 N -0.599 5.599 7 C 0.101 3.899 8 C -0.135 4.135 9 C -0.111 4.111 10 C 0.177 3.823 11 C 0.073 3.927 12 O -0.575 6.575 13 N -0.732 5.732 14 C -0.157 4.157 15 H 0.078 0.922 16 C -0.085 4.085 17 N -0.995 5.995 18 Si 0.933 3.067 19 H -0.308 1.308 20 H -0.303 1.303 21 H -0.245 1.245 22 C 0.120 3.880 23 C 0.529 3.471 24 O -0.592 6.592 25 C -0.203 4.203 26 C -0.110 4.110 27 C -0.174 4.174 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.159 0.841 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.030 0.970 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.039 0.961 41 H 0.373 0.627 42 H 0.356 0.644 43 H 0.243 0.757 44 H 0.042 0.958 45 H 0.083 0.917 46 H 0.149 0.851 47 H 0.092 0.908 48 H 0.147 0.853 49 H 0.125 0.875 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.008 13.421 16.432 24.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.329 5.329 3 C -0.023 4.023 4 C 0.271 3.729 5 O -0.460 6.460 6 N -0.332 5.332 7 C -0.020 4.020 8 C -0.173 4.173 9 C -0.149 4.149 10 C 0.086 3.914 11 C -0.007 4.007 12 O -0.380 6.380 13 N -0.375 5.375 14 C -0.289 4.289 15 H 0.095 0.905 16 C -0.273 4.273 17 N -0.650 5.650 18 Si 0.764 3.236 19 H -0.237 1.237 20 H -0.230 1.230 21 H -0.169 1.169 22 C -0.005 4.005 23 C 0.319 3.681 24 O -0.473 6.473 25 C -0.224 4.224 26 C -0.147 4.147 27 C -0.211 4.211 28 H 0.114 0.886 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.176 0.824 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.114 0.886 35 H 0.135 0.865 36 H 0.049 0.951 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.221 0.779 42 H 0.190 0.810 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.166 0.834 47 H 0.111 0.889 48 H 0.165 0.835 49 H 0.143 0.857 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.850 12.670 16.348 24.350 hybrid contribution 1.611 -0.745 -0.735 1.921 sum -11.240 11.925 15.612 22.634 Atomic orbital electron populations 1.22087 0.76079 1.04137 1.03804 1.47489 1.08845 1.04118 1.72468 1.21466 1.00303 0.87705 0.92807 1.21743 0.78071 0.80360 0.92681 1.90707 1.53400 1.53892 1.47994 1.48024 1.54876 1.22412 1.07843 1.22115 0.94761 0.96301 0.88815 1.21928 0.96281 1.01075 0.97997 1.21694 1.02546 0.97832 0.92806 1.20411 0.90820 0.86192 0.93939 1.22737 0.97881 0.91245 0.88794 1.86903 1.86288 1.46610 1.18235 1.42840 1.46031 1.11890 1.36691 1.19166 1.14026 0.89755 1.05906 0.90475 1.25310 1.03636 0.96833 1.01519 1.69881 1.47740 1.04624 1.42732 0.85695 0.79930 0.77959 0.79992 1.23656 1.23039 1.16924 1.21712 0.96976 0.98983 0.82842 1.20497 0.86951 0.86427 0.74249 1.90743 1.16785 1.88048 1.51710 1.22285 1.03015 0.88790 1.08267 1.23041 1.03307 0.98915 0.89423 1.22983 0.98428 0.96470 1.03233 0.88557 0.90714 0.90440 0.82384 0.88731 0.87087 0.88588 0.86489 0.95065 0.87076 0.90946 0.91008 0.94232 0.77938 0.81028 0.94843 0.93967 0.89942 0.83368 0.88944 0.83536 0.85727 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.54 10.27 127.77 1.31 2.86 16 2 N -0.60 -18.45 2.36 -851.12 -2.01 -20.46 16 3 C 0.10 3.08 4.23 85.63 0.36 3.44 16 4 C 0.48 19.41 7.77 87.66 0.68 20.09 16 5 O -0.58 -30.80 15.84 -3.05 -0.05 -30.85 16 6 N -0.60 -20.17 2.90 -819.80 -2.38 -22.54 16 7 C 0.10 2.09 6.35 86.36 0.55 2.64 16 8 C -0.13 -3.01 5.91 30.67 0.18 -2.83 16 9 C -0.11 -2.64 4.76 30.62 0.15 -2.50 16 10 C 0.18 6.39 0.68 3.52 0.00 6.39 16 11 C 0.07 2.44 6.08 71.98 0.44 2.88 16 12 O -0.57 -24.05 10.09 -148.98 -1.50 -25.56 16 13 N -0.73 -36.01 4.55 -303.72 -1.38 -37.39 16 14 C -0.16 -9.85 8.68 84.03 0.73 -9.12 16 15 H 0.08 5.44 5.49 -2.91 -0.02 5.42 16 16 C -0.08 -5.78 5.50 84.86 0.47 -5.31 16 17 N -0.99 -73.80 13.97 21.65 0.30 -73.49 16 18 Si 0.93 54.08 27.73 68.60 1.90 55.98 16 19 H -0.31 -19.07 7.11 99.48 0.71 -18.36 16 20 H -0.30 -17.67 7.11 99.48 0.71 -16.96 16 21 H -0.24 -12.30 6.52 99.48 0.65 -11.66 16 22 C 0.12 4.52 4.82 86.21 0.42 4.93 16 23 C 0.53 20.42 7.46 87.66 0.65 21.07 16 24 O -0.59 -30.42 15.84 -3.04 -0.05 -30.47 16 25 C -0.20 -5.82 5.29 -11.54 -0.06 -5.88 16 26 C -0.11 -2.27 10.24 30.60 0.31 -1.96 16 27 C -0.17 -5.09 10.04 30.60 0.31 -4.79 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.38 8.07 -2.39 -0.02 1.36 16 30 H 0.08 1.45 5.99 -2.39 -0.01 1.43 16 31 H 0.16 2.67 7.87 -2.39 -0.02 2.65 16 32 H 0.09 3.10 6.97 -2.38 -0.02 3.08 16 33 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.10 1.62 5.93 -2.39 -0.01 1.60 16 35 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.03 0.97 6.75 -2.39 -0.02 0.95 16 37 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 40 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.37 11.79 9.12 -74.06 -0.68 11.11 16 42 H 0.36 17.48 4.28 -92.71 -0.40 17.08 16 43 H 0.24 17.49 8.31 -92.71 -0.77 16.72 16 44 H 0.04 2.18 5.66 -2.39 -0.01 2.17 16 45 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.15 3.44 6.43 -2.39 -0.02 3.43 16 47 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.15 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.12 2.99 8.14 -2.38 -0.02 2.97 16 50 H 0.07 2.51 7.67 -2.39 -0.02 2.49 16 Total: -1.00 -111.90 390.21 1.18 -110.73 By element: Atomic # 1 Polarization: 42.29 SS G_CDS: -0.16 Total: 42.13 kcal Atomic # 6 Polarization: 25.43 SS G_CDS: 6.50 Total: 31.92 kcal Atomic # 7 Polarization: -148.42 SS G_CDS: -5.47 Total: -153.88 kcal Atomic # 8 Polarization: -85.28 SS G_CDS: -1.60 Total: -86.88 kcal Atomic # 14 Polarization: 54.08 SS G_CDS: 1.90 Total: 55.98 kcal Total: -111.90 1.18 -110.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724905362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.389 kcal (2) G-P(sol) polarization free energy of solvation -111.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -110.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds