Wall clock time and date at job start Sat Apr 11 2020 05:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99762 * 2 1 4 4 C 1.53784 * 113.61580 * 209.99803 * 3 2 1 5 5 C 1.53780 * 87.08157 * 220.02062 * 4 3 2 6 6 C 1.50701 * 113.61464 * 139.98308 * 5 4 3 7 7 O 1.21279 * 119.99699 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99938 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00008 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47105 * 174.76288 * 9 8 6 11 11 N 1.46898 * 112.85047 * 312.16690 * 10 9 8 12 12 C 1.46899 * 111.00189 * 291.35856 * 11 10 9 13 13 C 1.50705 * 109.46842 * 174.44167 * 12 11 10 14 14 O 1.21292 * 120.00085 * 359.97438 * 13 12 11 15 15 N 1.34772 * 119.99714 * 180.02562 * 13 12 11 16 16 C 1.37102 * 119.99988 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99760 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99952 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99837 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00291 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46783 * 90.00219 * 20 18 16 22 22 H 1.48499 * 109.47201 * 210.00423 * 20 18 16 23 23 H 1.48501 * 109.47110 * 330.00858 * 20 18 16 24 24 C 1.53780 * 113.68891 * 83.44295 * 10 9 8 25 25 C 1.53781 * 87.08270 * 89.12678 * 24 10 9 26 26 C 1.53777 * 87.08158 * 25.42922 * 25 24 10 27 27 C 1.53781 * 87.08326 * 25.42905 * 5 4 3 28 28 H 1.09004 * 109.47017 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47438 * 300.00260 * 1 2 3 30 30 H 1.09008 * 109.47178 * 60.00435 * 1 2 3 31 31 H 1.09005 * 112.90857 * 341.24532 * 3 2 1 32 32 H 1.09001 * 113.61473 * 105.46778 * 4 3 2 33 33 H 1.09008 * 113.60921 * 334.56834 * 4 3 2 34 34 H 1.08997 * 113.60816 * 270.79596 * 5 4 3 35 35 H 0.96997 * 120.00209 * 359.97438 * 8 6 5 36 36 H 1.09006 * 109.47280 * 54.76024 * 9 8 6 37 37 H 1.09001 * 109.47466 * 294.76803 * 9 8 6 38 38 H 1.00900 * 110.99615 * 167.40027 * 11 10 9 39 39 H 1.08997 * 109.47121 * 294.43595 * 12 11 10 40 40 H 1.09000 * 109.47151 * 54.44066 * 12 11 10 41 41 H 0.96999 * 120.00418 * 359.97438 * 15 13 12 42 42 H 0.96999 * 120.00128 * 179.97438 * 19 18 16 43 43 H 1.09004 * 113.61149 * 203.67761 * 24 10 9 44 44 H 1.08997 * 113.61061 * 334.57369 * 24 10 9 45 45 H 1.09004 * 113.61369 * 270.88114 * 25 24 10 46 46 H 1.09000 * 113.61141 * 139.98287 * 25 24 10 47 47 H 1.08997 * 113.61546 * 220.01775 * 26 25 24 48 48 H 1.09007 * 113.61068 * 89.12038 * 26 25 24 49 49 H 1.08996 * 113.61183 * 89.11452 * 27 5 4 50 50 H 1.08992 * 113.61508 * 220.01898 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3755 1.3720 -0.7045 5 6 3.8226 2.3182 0.4223 6 6 5.2327 2.0719 0.8935 7 8 5.8963 1.1921 0.3871 8 7 5.7559 2.8286 1.8784 9 6 7.1265 2.5888 2.3369 10 6 7.5165 3.6579 3.3595 11 7 7.1913 5.0193 2.9138 12 6 8.0424 5.4215 1.7860 13 6 7.5909 6.7633 1.2694 14 8 6.6521 7.3287 1.7893 15 7 8.2295 7.3345 0.2291 16 6 7.8191 8.5554 -0.2405 17 1 6.9838 9.0592 0.2229 18 6 8.4779 9.1446 -1.3127 19 7 8.0842 10.3146 -1.7632 20 14 9.9232 8.2735 -2.1138 21 1 9.4304 7.4062 -3.2139 22 1 10.8663 9.2810 -2.6623 23 1 10.6218 7.4406 -1.1021 24 6 7.0421 3.3478 4.7891 25 6 8.3719 2.6005 4.9841 26 6 8.9529 3.5095 3.8883 27 6 2.7533 1.6490 1.3018 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.3142 2.0797 -0.3228 32 1 3.3384 1.8471 -1.6848 33 1 3.9088 0.4213 -0.7137 34 1 3.6234 3.3694 0.2142 35 1 5.2251 3.5320 2.2836 36 1 7.8072 2.6337 1.4867 37 1 7.1877 1.6038 2.7996 38 1 7.2660 5.6767 3.6756 39 1 9.0781 5.4901 2.1188 40 1 7.9648 4.6808 0.9901 41 1 8.9800 6.8822 -0.1869 42 1 8.5443 10.7261 -2.5114 43 1 6.9423 4.2328 5.4176 44 1 6.1669 2.6993 4.8276 45 1 8.3273 1.5488 4.7008 46 1 8.8209 2.7570 5.9649 47 1 9.6204 2.9915 3.1997 48 1 9.3757 4.4387 4.2707 49 1 3.1165 0.7741 1.8410 50 1 2.2139 2.3477 1.9411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733718541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:24 Heat of formation + Delta-G solvation = -68.600446 kcal Electronic energy + Delta-G solvation = -30044.250425 eV Core-core repulsion = 25880.198995 eV Total energy + Delta-G solvation = -4164.051430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66638 -39.96032 -38.40409 -38.16171 -35.93373 -34.35830 -34.12964 -33.26228 -31.65897 -28.55932 -27.35132 -26.86212 -25.92438 -25.90618 -25.05068 -24.03027 -22.35498 -20.92845 -19.76396 -19.38775 -18.89210 -18.35232 -17.68295 -16.77798 -16.30855 -16.14270 -15.77402 -15.57758 -15.38357 -15.01272 -14.89839 -14.79217 -14.54806 -14.25359 -14.06446 -13.46858 -13.20547 -13.11938 -12.85117 -12.66206 -12.57012 -12.43399 -12.37718 -12.19630 -12.01471 -11.99071 -11.47173 -11.35682 -11.22777 -11.07811 -11.06993 -10.94080 -10.80438 -10.60399 -10.44179 -9.99295 -9.81379 -9.64131 -9.58408 -8.97582 -8.64488 -8.20758 -8.16166 -6.32904 -3.84283 2.66356 3.01772 3.06853 3.11903 3.14773 3.62258 3.72446 4.01046 4.09436 4.25074 4.31506 4.36423 4.42869 4.45930 4.54168 4.61382 4.64655 4.82700 4.94225 5.07451 5.09880 5.19175 5.22747 5.26481 5.36406 5.41225 5.48105 5.50073 5.52830 5.59062 5.60017 5.67146 5.69843 5.75670 5.76706 5.81808 5.86635 5.90900 5.94336 6.06366 6.11623 6.49014 6.97930 7.01999 7.47467 7.56460 7.63746 8.12487 8.30604 8.58000 8.93189 9.40929 9.81013 10.80164 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008490 B = 0.003069 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3297.016833 B = 9120.472472 C =11315.198539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.061 3.939 4 C -0.113 4.113 5 C -0.138 4.138 6 C 0.526 3.474 7 O -0.549 6.549 8 N -0.709 5.709 9 C 0.152 3.848 10 C 0.080 3.920 11 N -0.651 5.651 12 C 0.049 3.951 13 C 0.451 3.549 14 O -0.565 6.565 15 N -0.591 5.591 16 C -0.305 4.305 17 H 0.119 0.881 18 C 0.042 3.958 19 N -0.881 5.881 20 Si 0.878 3.122 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.270 1.270 24 C -0.128 4.128 25 C -0.140 4.140 26 C -0.167 4.167 27 C -0.136 4.136 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.413 0.587 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.354 0.646 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.086 0.914 49 H 0.093 0.907 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.635 -19.780 9.393 22.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.003 3.997 4 C -0.151 4.151 5 C -0.159 4.159 6 C 0.312 3.688 7 O -0.426 6.426 8 N -0.361 5.361 9 C 0.027 3.973 10 C -0.012 4.012 11 N -0.283 5.283 12 C -0.084 4.084 13 C 0.237 3.763 14 O -0.447 6.447 15 N -0.230 5.230 16 C -0.433 4.433 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.521 5.521 20 Si 0.705 3.295 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.166 4.166 25 C -0.178 4.178 26 C -0.207 4.207 27 C -0.175 4.175 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.249 0.751 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.175 0.825 39 H 0.064 0.936 40 H 0.103 0.897 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.104 0.896 49 H 0.111 0.889 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.189 -20.175 8.823 23.164 hybrid contribution 1.740 0.382 -0.164 1.788 sum -5.450 -19.793 8.659 22.281 Atomic orbital electron populations 1.22797 0.81324 1.02677 0.99981 1.87971 1.19525 1.27371 1.94540 1.23724 0.94153 0.85315 0.96544 1.23116 0.94209 1.00575 0.97202 1.22490 0.92150 1.01877 0.99371 1.20264 0.88281 0.81188 0.79064 1.90676 1.62072 1.33012 1.56882 1.45764 1.15082 1.37119 1.38138 1.20989 0.83773 0.96256 0.96247 1.22569 0.94716 0.90227 0.93721 1.59799 1.56010 1.01368 1.11148 1.21660 0.94783 0.96996 0.94911 1.19695 0.86086 0.87255 0.83286 1.90556 1.29661 1.64810 1.59623 1.42220 1.30602 1.19903 1.30309 1.19414 1.16496 0.93673 1.13746 0.86291 1.25033 0.98169 0.95980 0.96935 1.69618 1.41013 1.15366 1.26128 0.86690 0.82684 0.79886 0.80247 1.19553 1.20163 1.19548 1.23097 0.97790 1.00800 0.94910 1.22766 0.96882 0.98925 0.99180 1.23632 0.97391 1.00791 0.98923 1.23409 0.95989 1.00850 0.97205 0.89796 0.94018 0.93959 0.89022 0.90344 0.87784 0.86261 0.75123 0.91313 0.91205 0.82527 0.93558 0.89662 0.79741 0.91606 0.89426 0.90840 0.89984 0.91194 0.91073 0.89576 0.88877 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.85 101.05 1.10 1.30 16 2 O -0.38 -3.96 10.71 -35.23 -0.38 -4.34 16 3 C 0.06 0.57 4.31 -25.92 -0.11 0.46 16 4 C -0.11 -1.24 7.24 -25.92 -0.19 -1.43 16 5 C -0.14 -1.49 4.15 -90.96 -0.38 -1.87 16 6 C 0.53 7.08 7.35 -10.99 -0.08 7.00 16 7 O -0.55 -9.23 15.89 5.56 0.09 -9.15 16 8 N -0.71 -8.55 5.38 -60.29 -0.32 -8.87 16 9 C 0.15 1.76 4.60 -4.04 -0.02 1.74 16 10 C 0.08 0.84 0.79 -130.79 -0.10 0.73 16 11 N -0.65 -8.84 5.32 -100.39 -0.53 -9.37 16 12 C 0.05 0.78 5.78 -4.97 -0.03 0.75 16 13 C 0.45 9.91 7.83 -10.98 -0.09 9.83 16 14 O -0.56 -14.52 15.90 5.55 0.09 -14.43 16 15 N -0.59 -13.94 5.09 -10.96 -0.06 -14.00 16 16 C -0.30 -8.54 10.16 -14.93 -0.15 -8.69 16 17 H 0.12 3.80 7.39 -52.49 -0.39 3.42 16 18 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 19 N -0.88 -25.66 13.96 55.50 0.77 -24.88 16 20 Si 0.88 19.48 27.74 -169.99 -4.71 14.77 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 24 C -0.13 -1.11 7.34 -25.92 -0.19 -1.30 16 25 C -0.14 -1.10 7.73 -25.92 -0.20 -1.30 16 26 C -0.17 -1.56 6.49 -25.92 -0.17 -1.72 16 27 C -0.14 -1.26 7.46 -25.92 -0.19 -1.45 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.04 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.09 0.70 7.87 -51.93 -0.41 0.29 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.35 7.43 -51.92 -0.39 0.96 16 34 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.41 4.78 8.09 -40.82 -0.33 4.45 16 36 H 0.07 0.90 7.36 -51.93 -0.38 0.51 16 37 H 0.07 0.76 7.36 -51.93 -0.38 0.38 16 38 H 0.35 4.93 8.38 -39.29 -0.33 4.60 16 39 H 0.05 0.66 7.59 -51.93 -0.39 0.26 16 40 H 0.09 1.32 6.91 -51.93 -0.36 0.96 16 41 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.09 0.75 7.96 -51.93 -0.41 0.34 16 44 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 45 H 0.08 0.62 7.67 -51.93 -0.40 0.22 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 48 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 49 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 50 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 405.83 15.07 6.12 6.12 Total: -1.00 -33.90 405.83 -8.06 -41.96 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -8.22 Total: 17.11 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.90 Total: 5.08 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.14 Total: -57.12 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.20 Total: -27.91 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.77 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.90 -8.06 -41.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733718541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.644 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds