Wall clock time and date at job start Sat Apr 11 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46764 * 124.34707 * 2 1 4 4 C 1.54480 * 105.47241 * 197.03818 * 3 2 1 5 5 C 1.54784 * 101.69261 * 334.38904 * 4 3 2 6 6 H 1.09001 * 110.42713 * 143.71017 * 5 4 3 7 7 C 1.53003 * 110.61655 * 266.40173 * 5 4 3 8 8 C 1.50692 * 109.46837 * 181.21487 * 7 5 4 9 9 O 1.21279 * 120.00438 * 359.97438 * 8 7 5 10 10 N 1.34779 * 119.99714 * 179.97438 * 8 7 5 11 11 C 1.46927 * 120.63362 * 0.02562 * 10 8 7 12 12 C 1.53195 * 108.77287 * 233.58244 * 11 10 8 13 13 C 1.53034 * 109.31297 * 305.35873 * 12 11 10 14 14 C 1.53049 * 109.53787 * 61.36583 * 13 12 11 15 15 C 1.52993 * 109.49750 * 178.65033 * 14 13 12 16 16 O 1.42907 * 109.47492 * 300.00284 * 15 14 13 17 17 N 1.46504 * 109.49338 * 58.58684 * 14 13 12 18 18 C 1.36937 * 120.00084 * 60.00505 * 17 14 13 19 19 H 1.08000 * 119.99843 * 359.97438 * 18 17 14 20 20 C 1.38811 * 119.99537 * 179.97438 * 18 17 14 21 21 N 1.31622 * 119.99725 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00408 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47197 * 90.00223 * 22 20 18 24 24 H 1.48504 * 109.47289 * 209.99956 * 22 20 18 25 25 H 1.48498 * 109.47077 * 329.99871 * 22 20 18 26 26 C 1.46933 * 120.63000 * 179.71294 * 10 8 7 27 27 C 1.34420 * 124.35242 * 180.02562 * 2 1 3 28 28 O 1.21283 * 124.93917 * 359.53285 * 27 2 1 29 29 H 1.09004 * 109.46895 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46869 * 299.99955 * 1 2 3 31 31 H 1.08990 * 109.47249 * 60.00336 * 1 2 3 32 32 H 1.09003 * 110.24343 * 316.03631 * 3 2 1 33 33 H 1.09004 * 110.24843 * 77.94733 * 3 2 1 34 34 H 1.08997 * 110.97191 * 92.70203 * 4 3 2 35 35 H 1.09008 * 110.96860 * 216.42712 * 4 3 2 36 36 H 1.08999 * 109.46910 * 301.21519 * 7 5 4 37 37 H 1.08997 * 109.47083 * 61.21402 * 7 5 4 38 38 H 1.08999 * 109.58232 * 353.36484 * 11 10 8 39 39 H 1.08994 * 109.59013 * 113.65158 * 11 10 8 40 40 H 1.09000 * 109.49551 * 65.31137 * 12 11 10 41 41 H 1.09000 * 109.49262 * 185.37346 * 12 11 10 42 42 H 1.08995 * 109.45972 * 181.38553 * 13 12 11 43 43 H 1.09000 * 109.46141 * 301.36308 * 13 12 11 44 44 H 1.08999 * 109.47417 * 59.99914 * 15 14 13 45 45 H 1.08999 * 109.47223 * 180.02562 * 15 14 13 46 46 H 0.96699 * 114.00406 * 180.02562 * 16 15 14 47 47 H 0.96999 * 119.99225 * 239.99614 * 17 14 13 48 48 H 0.97001 * 120.00125 * 179.97438 * 21 20 18 49 49 H 1.08995 * 109.59103 * 246.20878 * 26 10 8 50 50 H 1.09002 * 109.58352 * 6.63897 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7489 -0.4362 5 6 3.6898 -0.7377 -0.0052 6 1 4.2356 -1.3468 -0.7258 7 6 4.2874 -0.8973 1.3942 8 6 4.2914 -2.3553 1.7753 9 8 3.8585 -3.1850 1.0039 10 7 4.7761 -2.7372 2.9735 11 6 5.3034 -1.7438 3.9190 12 6 6.7199 -2.1578 4.3300 13 6 6.6918 -3.5885 4.8724 14 6 6.2088 -4.5418 3.7768 15 6 6.2131 -5.9760 4.3095 16 8 7.5397 -6.3346 4.7016 17 7 7.1010 -4.4476 2.6186 18 6 8.4309 -4.7452 2.7527 19 1 8.8221 -5.0489 3.7124 20 6 9.2760 -4.6565 1.6551 21 7 10.5544 -4.9420 1.7841 22 14 8.5991 -4.1318 -0.0050 23 1 8.6869 -2.6548 -0.1310 24 1 9.3923 -4.7689 -1.0868 25 1 7.1800 -4.5547 -0.1170 26 6 4.7809 -4.1543 3.3619 27 6 2.2235 -1.1098 -0.0005 28 8 1.7947 -2.2442 0.0071 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.8981 1.9385 -0.7100 33 1 2.3296 1.6437 1.0001 34 1 3.8264 0.8451 -1.5147 35 1 4.4754 1.3016 0.0955 36 1 5.3092 -0.5179 1.3984 37 1 3.6884 -0.3360 2.1112 38 1 5.3330 -0.7645 3.4413 39 1 4.6627 -1.7015 4.7998 40 1 7.3788 -2.1102 3.4630 41 1 7.0864 -1.4822 5.1030 42 1 7.6943 -3.8768 5.1884 43 1 6.0134 -3.6408 5.7239 44 1 5.5484 -6.0458 5.1705 45 1 5.8695 -6.6546 3.5288 46 1 7.6176 -7.2334 5.0497 47 1 6.7495 -4.1746 1.7567 48 1 11.1449 -4.8804 1.0170 49 1 4.1000 -4.3060 4.1994 50 1 4.4658 -4.7659 2.5165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733823550.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:38 Heat of formation + Delta-G solvation = -84.315641 kcal Electronic energy + Delta-G solvation = -32162.267530 eV Core-core repulsion = 27997.534639 eV Total energy + Delta-G solvation = -4164.732892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.87882 -39.75873 -37.81904 -36.41933 -35.71234 -33.98021 -33.76078 -31.97993 -31.37882 -30.06341 -29.12043 -27.11150 -26.26052 -25.39579 -24.39761 -23.12212 -21.81237 -21.60985 -19.78654 -19.05036 -18.27217 -17.71280 -17.13530 -16.52557 -16.46562 -16.30514 -15.88737 -15.33034 -14.97197 -14.73787 -14.11903 -14.05725 -13.97970 -13.84547 -13.56239 -13.45065 -13.24393 -12.88072 -12.74774 -12.66364 -12.47762 -12.42296 -12.36777 -12.19449 -11.99463 -11.94528 -11.45668 -11.26973 -11.06193 -10.84815 -10.75135 -10.41038 -10.33818 -10.11953 -9.92567 -9.69588 -9.41775 -9.33688 -8.92156 -8.86453 -8.74349 -8.23972 -7.11664 -5.56354 -2.90454 2.61537 2.85841 2.95134 3.20302 3.46143 3.55675 3.59236 4.14709 4.21146 4.47866 4.61739 4.73995 4.81994 4.90718 4.96614 5.01126 5.07165 5.16650 5.18901 5.20664 5.22502 5.37522 5.41518 5.47379 5.49641 5.57908 5.60864 5.61752 5.71536 5.81276 5.85771 5.86523 5.92220 6.01425 6.10848 6.12711 6.34077 6.37518 6.39199 6.70513 6.82291 6.94470 6.98021 7.08610 7.68920 8.23240 8.29743 8.41601 8.51384 8.66542 9.44339 10.13290 10.31067 11.62043 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.003917 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.401830 B = 7146.898394 C = 7981.646909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.635 5.635 3 C 0.105 3.895 4 C -0.131 4.131 5 C -0.109 4.109 6 H 0.113 0.887 7 C -0.122 4.122 8 C 0.502 3.498 9 O -0.510 6.510 10 N -0.604 5.604 11 C 0.110 3.890 12 C -0.129 4.129 13 C -0.115 4.115 14 C 0.196 3.804 15 C 0.075 3.925 16 O -0.534 6.534 17 N -0.731 5.731 18 C -0.211 4.211 19 H 0.116 0.884 20 C -0.002 4.002 21 N -0.940 5.940 22 Si 0.865 3.135 23 H -0.289 1.289 24 H -0.294 1.294 25 H -0.276 1.276 26 C 0.114 3.886 27 C 0.517 3.483 28 O -0.492 6.492 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.043 0.957 44 H 0.025 0.975 45 H 0.037 0.963 46 H 0.355 0.645 47 H 0.360 0.640 48 H 0.254 0.746 49 H 0.067 0.933 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.861 15.047 3.141 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.372 5.372 3 C -0.019 4.019 4 C -0.168 4.168 5 C -0.131 4.131 6 H 0.131 0.869 7 C -0.163 4.163 8 C 0.289 3.711 9 O -0.384 6.384 10 N -0.338 5.338 11 C -0.013 4.013 12 C -0.167 4.167 13 C -0.154 4.154 14 C 0.103 3.897 15 C -0.006 4.006 16 O -0.336 6.336 17 N -0.373 5.373 18 C -0.341 4.341 19 H 0.133 0.867 20 C -0.196 4.196 21 N -0.589 5.589 22 Si 0.696 3.304 23 H -0.216 1.216 24 H -0.221 1.221 25 H -0.203 1.203 26 C -0.009 4.009 27 C 0.303 3.697 28 O -0.364 6.364 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.061 0.939 44 H 0.043 0.957 45 H 0.055 0.945 46 H 0.199 0.801 47 H 0.194 0.806 48 H 0.064 0.936 49 H 0.085 0.915 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.091 14.515 2.569 23.336 hybrid contribution -0.490 -0.071 -1.068 1.177 sum -18.581 14.444 1.501 23.583 Atomic orbital electron populations 1.21486 0.78480 1.03630 1.01018 1.48223 1.06235 1.07427 1.75341 1.22029 0.90769 0.87434 1.01624 1.22730 0.96618 0.94701 1.02793 1.21767 0.95004 0.97684 0.98686 0.86870 1.21550 1.03486 0.95285 0.95960 1.20467 0.78243 0.91009 0.81417 1.90835 1.44790 1.53418 1.49392 1.47893 1.61676 1.07713 1.16562 1.21776 0.95867 0.91249 0.92419 1.21813 0.95446 0.97174 1.02268 1.21810 1.02553 0.94376 0.96686 1.19991 0.88768 0.91869 0.89087 1.22618 0.84320 0.97599 0.96053 1.86894 1.27501 1.34034 1.85189 1.42797 1.06621 1.82050 1.05860 1.19429 0.81738 1.34835 0.98057 0.86675 1.24614 0.95455 1.02871 0.96641 1.69684 1.02941 1.56768 1.29540 0.86816 0.78485 0.78282 0.86787 1.21640 1.22110 1.20266 1.21794 0.96394 0.81791 1.00936 1.20757 0.88754 0.84408 0.75753 1.90795 1.77810 1.20611 1.47161 0.90063 0.92412 0.92404 0.90556 0.91251 0.89549 0.88740 0.87505 0.88989 0.90583 0.92031 0.89628 0.91934 0.90115 0.93858 0.95669 0.94481 0.80066 0.80640 0.93568 0.91499 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.80 11.14 59.85 0.67 1.47 16 2 N -0.63 -6.60 3.33 -180.29 -0.60 -7.20 16 3 C 0.10 0.70 7.34 -3.12 -0.02 0.68 16 4 C -0.13 -0.96 6.72 -25.01 -0.17 -1.12 16 5 C -0.11 -1.33 2.57 -90.55 -0.23 -1.56 16 6 H 0.11 1.62 8.02 -51.93 -0.42 1.21 16 7 C -0.12 -1.47 3.48 -27.89 -0.10 -1.56 16 8 C 0.50 8.52 7.48 -10.99 -0.08 8.44 16 9 O -0.51 -10.92 13.09 -16.70 -0.22 -11.14 16 10 N -0.60 -9.58 2.86 -172.48 -0.49 -10.07 16 11 C 0.11 1.38 6.34 -3.71 -0.02 1.36 16 12 C -0.13 -1.97 5.93 -26.61 -0.16 -2.13 16 13 C -0.11 -1.97 4.38 -26.69 -0.12 -2.08 16 14 C 0.20 3.69 0.69 -131.45 -0.09 3.60 16 15 C 0.08 1.34 6.08 37.15 0.23 1.57 16 16 O -0.53 -10.51 9.97 -35.23 -0.35 -10.87 16 17 N -0.73 -17.31 4.02 -46.89 -0.19 -17.50 16 18 C -0.21 -5.87 8.77 -15.06 -0.13 -6.00 16 19 H 0.12 3.45 5.54 -52.49 -0.29 3.16 16 20 C 0.00 -0.06 5.50 -17.43 -0.10 -0.16 16 21 N -0.94 -30.09 13.97 55.49 0.78 -29.31 16 22 Si 0.86 23.20 27.73 -169.99 -4.71 18.49 16 23 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 24 H -0.29 -8.08 7.11 56.52 0.40 -7.68 16 25 H -0.28 -7.45 6.52 56.52 0.37 -7.08 16 26 C 0.11 1.94 5.19 -3.46 -0.02 1.92 16 27 C 0.52 7.51 6.98 -10.86 -0.08 7.44 16 28 O -0.49 -9.64 15.18 -16.70 -0.25 -9.89 16 29 H 0.08 0.83 7.53 -51.93 -0.39 0.44 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.50 7.91 -51.92 -0.41 0.09 16 36 H 0.11 1.11 7.69 -51.93 -0.40 0.71 16 37 H 0.09 0.87 7.94 -51.93 -0.41 0.46 16 38 H 0.08 0.76 5.93 -51.93 -0.31 0.46 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.63 7.53 -51.93 -0.39 1.23 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.08 1.64 6.82 -51.93 -0.35 1.29 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.35 5.31 9.12 45.56 0.42 5.73 16 47 H 0.36 9.03 5.52 -40.82 -0.23 8.81 16 48 H 0.25 7.86 8.31 -40.82 -0.34 7.52 16 49 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.09 1.80 7.00 -51.93 -0.36 1.44 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -39.65 383.92 -8.05 -47.70 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -7.37 Total: 12.16 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: -0.42 Total: 11.86 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -0.51 Total: -64.09 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.82 Total: -31.90 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.71 Total: 18.49 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.65 -8.05 -47.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733823550.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.616 kcal (2) G-P(sol) polarization free energy of solvation -39.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds