Wall clock time and date at job start Sat Apr 11 2020 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46760 * 124.35145 * 2 1 4 4 C 1.54476 * 105.47435 * 162.98250 * 3 2 1 5 5 C 1.54624 * 101.76920 * 25.41511 * 4 3 2 6 6 H 1.09002 * 110.48641 * 216.39251 * 5 4 3 7 7 C 1.53001 * 110.48898 * 93.87629 * 5 4 3 8 8 C 1.50699 * 109.47258 * 175.00148 * 7 5 4 9 9 O 1.21278 * 119.99874 * 0.02562 * 8 7 5 10 10 N 1.34771 * 119.99704 * 180.27785 * 8 7 5 11 11 C 1.46506 * 119.99834 * 174.61524 * 10 8 7 12 12 C 1.53002 * 109.45773 * 302.69075 * 11 10 8 13 13 O 1.42896 * 109.46963 * 300.73028 * 12 11 10 14 14 C 1.53034 * 109.46190 * 182.73176 * 11 10 8 15 15 C 1.53195 * 109.31113 * 301.34558 * 14 11 10 16 16 N 1.46920 * 108.77595 * 305.36059 * 15 14 11 17 17 C 1.36937 * 120.63378 * 233.58749 * 16 15 14 18 18 H 1.07997 * 120.00127 * 31.72603 * 17 16 15 19 19 C 1.38812 * 120.00006 * 211.72543 * 17 16 15 20 20 N 1.31621 * 120.00176 * 11.03379 * 19 17 16 21 21 Si 1.86799 * 119.99953 * 191.03551 * 19 17 16 22 22 H 1.48501 * 109.47309 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47338 * 120.00096 * 21 19 17 24 24 H 1.48495 * 109.47008 * 239.99973 * 21 19 17 25 25 C 1.46932 * 118.73462 * 53.61240 * 16 15 14 26 26 C 1.53040 * 109.45990 * 62.66145 * 11 10 8 27 27 C 1.34427 * 124.34968 * 179.97438 * 2 1 3 28 28 O 1.21279 * 124.94152 * 0.44999 * 27 2 1 29 29 H 1.08997 * 109.47113 * 90.00434 * 1 2 3 30 30 H 1.09003 * 109.47162 * 210.00492 * 1 2 3 31 31 H 1.09004 * 109.47356 * 330.00236 * 1 2 3 32 32 H 1.08998 * 110.24585 * 43.97915 * 3 2 1 33 33 H 1.09000 * 110.31806 * 282.02387 * 3 2 1 34 34 H 1.09005 * 110.96903 * 267.29098 * 4 3 2 35 35 H 1.09007 * 110.97145 * 143.53534 * 4 3 2 36 36 H 1.09008 * 109.46314 * 55.00453 * 7 5 4 37 37 H 1.08997 * 109.47237 * 295.00543 * 7 5 4 38 38 H 0.96999 * 120.00323 * 354.61804 * 10 8 7 39 39 H 1.08999 * 109.47435 * 60.73007 * 12 11 10 40 40 H 1.08997 * 109.46951 * 180.73002 * 12 11 10 41 41 H 0.96701 * 113.99702 * 180.02562 * 13 12 11 42 42 H 1.09001 * 109.50111 * 61.29237 * 14 11 10 43 43 H 1.08997 * 109.49883 * 181.39288 * 14 11 10 44 44 H 1.09005 * 109.58715 * 185.57745 * 15 14 11 45 45 H 1.08992 * 109.58965 * 65.15506 * 15 14 11 46 46 H 0.96996 * 120.00369 * 180.02562 * 20 19 17 47 47 H 1.09008 * 109.58225 * 186.60349 * 25 16 15 48 48 H 1.08992 * 109.58964 * 66.17936 * 25 16 15 49 49 H 1.09001 * 109.49771 * 178.60509 * 26 11 10 50 50 H 1.09003 * 109.50048 * 298.70668 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7010 0.7486 0.4357 5 6 3.6898 -0.7379 0.0102 6 1 4.2346 -1.3456 0.7327 7 6 4.2928 -0.8996 -1.3866 8 6 4.3837 -2.3646 -1.7280 9 8 4.0031 -3.1973 -0.9326 10 7 4.8925 -2.7496 -2.9151 11 6 5.0905 -4.1729 -3.2004 12 6 6.0022 -4.7843 -2.1345 13 8 7.2590 -4.1044 -2.1359 14 6 5.7388 -4.3316 -4.5775 15 6 4.8398 -3.6880 -5.6379 16 7 3.4947 -4.2696 -5.5337 17 6 2.8846 -4.8177 -6.6303 18 1 3.4781 -5.2936 -7.3969 19 6 1.5034 -4.7617 -6.7566 20 7 0.7986 -4.0015 -5.9456 21 14 0.6448 -5.7653 -8.0776 22 1 1.6544 -6.5313 -8.8518 23 1 -0.3096 -6.7081 -7.4410 24 1 -0.0928 -4.8549 -8.9898 25 6 2.8162 -4.2514 -4.2305 26 6 3.7379 -4.8887 -3.1859 27 6 2.2235 -1.1098 0.0005 28 8 1.7946 -2.2443 -0.0068 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.8984 1.9383 0.7101 33 1 2.3309 1.6443 -0.9998 34 1 3.8268 0.8448 1.5142 35 1 4.4754 1.3010 -0.0966 36 1 5.2901 -0.4598 -1.4049 37 1 3.6597 -0.3950 -2.1164 38 1 5.1277 -2.0843 -3.5807 39 1 5.5351 -4.6825 -1.1550 40 1 6.1600 -5.8402 -2.3538 41 1 7.8887 -4.4405 -1.4835 42 1 6.7124 -3.8415 -4.5799 43 1 5.8637 -5.3911 -4.8008 44 1 5.2468 -3.8841 -6.6299 45 1 4.7871 -2.6126 -5.4684 46 1 -0.1665 -3.9626 -6.0335 47 1 1.8880 -4.8193 -4.2939 48 1 2.5985 -3.2220 -3.9462 49 1 3.8816 -5.9430 -3.4224 50 1 3.2872 -4.7952 -2.1978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733914716.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:56 Heat of formation + Delta-G solvation = -87.865590 kcal Electronic energy + Delta-G solvation = -32204.489363 eV Core-core repulsion = 28039.602534 eV Total energy + Delta-G solvation = -4164.886829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.69563 -39.71408 -37.35162 -36.23261 -36.03389 -33.95369 -33.62045 -31.86753 -30.62434 -29.72197 -29.23345 -26.90387 -26.63886 -25.54425 -23.81052 -22.20510 -21.75405 -20.99001 -20.23728 -19.23866 -18.52458 -17.24578 -17.09247 -16.60045 -16.27141 -16.04910 -15.65865 -15.00036 -14.82675 -14.68793 -14.11525 -14.04392 -13.75757 -13.47504 -13.38711 -13.32450 -13.03316 -13.00086 -12.68290 -12.55623 -12.52024 -12.28932 -12.15371 -11.80735 -11.76111 -11.42268 -11.25954 -11.12249 -10.99660 -10.81969 -10.68941 -10.28081 -10.18293 -9.97359 -9.83107 -9.61440 -9.46615 -9.40792 -8.83818 -8.64914 -8.41545 -8.35917 -6.53907 -5.71544 -3.20408 2.82313 3.06112 3.19157 3.40008 3.47351 3.49397 3.60103 4.30736 4.34146 4.52617 4.54097 4.59422 4.86436 4.99844 5.16609 5.21600 5.29943 5.32844 5.40681 5.45277 5.47679 5.49899 5.61020 5.62989 5.64933 5.73000 5.76029 5.78175 5.87413 5.96536 6.03957 6.19431 6.35304 6.47190 6.57233 6.60842 6.75689 6.77725 6.92154 7.01498 7.19021 7.23414 7.51027 7.81557 7.82967 7.86971 8.10077 8.43702 8.54455 8.80903 9.28928 9.90683 10.49407 11.35772 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.004211 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.940780 B = 6647.689477 C = 8537.510928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.634 5.634 3 C 0.104 3.896 4 C -0.130 4.130 5 C -0.103 4.103 6 H 0.111 0.889 7 C -0.126 4.126 8 C 0.509 3.491 9 O -0.518 6.518 10 N -0.704 5.704 11 C 0.197 3.803 12 C 0.062 3.938 13 O -0.569 6.569 14 C -0.133 4.133 15 C 0.146 3.854 16 N -0.592 5.592 17 C -0.254 4.254 18 H 0.063 0.937 19 C 0.005 3.995 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.185 3.815 26 C -0.153 4.153 27 C 0.515 3.485 28 O -0.489 6.489 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.396 0.604 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.368 0.632 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.013 0.987 46 H 0.253 0.747 47 H 0.084 0.916 48 H 0.017 0.983 49 H 0.057 0.943 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.135 11.936 13.349 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.371 5.371 3 C -0.020 4.020 4 C -0.168 4.168 5 C -0.126 4.126 6 H 0.129 0.871 7 C -0.166 4.166 8 C 0.294 3.706 9 O -0.393 6.393 10 N -0.356 5.356 11 C 0.111 3.889 12 C -0.016 4.016 13 O -0.373 6.373 14 C -0.172 4.172 15 C 0.019 3.981 16 N -0.315 5.315 17 C -0.384 4.384 18 H 0.081 0.919 19 C -0.194 4.194 20 N -0.546 5.546 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.060 3.940 26 C -0.193 4.193 27 C 0.301 3.699 28 O -0.360 6.360 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.214 0.786 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.031 0.969 46 H 0.063 0.937 47 H 0.102 0.898 48 H 0.035 0.965 49 H 0.076 0.924 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.054 11.039 13.419 19.152 hybrid contribution -0.255 -0.344 -0.635 0.766 sum 7.800 10.694 12.784 18.402 Atomic orbital electron populations 1.21486 0.78292 1.02586 1.02006 1.48192 1.06306 1.07293 1.75349 1.22027 0.90730 0.87551 1.01651 1.22700 0.96743 0.94974 1.02400 1.21675 0.95142 0.97203 0.98534 0.87110 1.21536 1.02946 0.95737 0.96392 1.20273 0.77500 0.90659 0.82188 1.90714 1.46161 1.53297 1.49154 1.45846 1.64937 1.08117 1.16683 1.20225 0.94620 0.80510 0.93524 1.22768 0.83802 0.94535 1.00522 1.86464 1.25932 1.62701 1.62215 1.22234 0.98557 1.02201 0.94251 1.20884 0.87001 0.94221 0.95973 1.44067 1.13837 1.67638 1.05953 1.19202 0.89837 1.29484 0.99853 0.91893 1.25172 0.97488 0.98400 0.98310 1.70004 1.05711 1.39392 1.39463 0.86228 0.79570 0.79618 0.81370 1.20256 1.21610 1.21723 1.20607 0.94174 0.97477 0.81781 1.22594 0.95200 0.99138 1.02328 1.20712 0.88655 0.84469 0.76066 1.90815 1.77778 1.20576 1.46828 0.92571 0.90822 0.91511 0.90705 0.91246 0.89834 0.88998 0.88080 0.89030 0.76976 0.91643 0.93742 0.78637 0.91825 0.91229 0.92689 0.96923 0.93727 0.89795 0.96507 0.92439 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.09 10.96 59.85 0.66 1.74 16 2 N -0.63 -7.82 3.33 -180.29 -0.60 -8.42 16 3 C 0.10 0.83 7.35 -3.13 -0.02 0.81 16 4 C -0.13 -0.94 6.71 -25.10 -0.17 -1.11 16 5 C -0.10 -1.23 2.54 -90.63 -0.23 -1.46 16 6 H 0.11 1.40 7.90 -51.93 -0.41 0.99 16 7 C -0.13 -1.52 5.11 -27.88 -0.14 -1.67 16 8 C 0.51 8.59 7.04 -10.99 -0.08 8.51 16 9 O -0.52 -10.46 10.24 -15.01 -0.15 -10.62 16 10 N -0.70 -11.85 3.97 -47.57 -0.19 -12.03 16 11 C 0.20 3.58 0.44 -131.78 -0.06 3.52 16 12 C 0.06 1.00 5.68 37.16 0.21 1.21 16 13 O -0.57 -7.94 12.84 -35.23 -0.45 -8.39 16 14 C -0.13 -2.38 4.85 -26.61 -0.13 -2.51 16 15 C 0.15 3.05 6.24 -3.71 -0.02 3.03 16 16 N -0.59 -15.11 2.98 -172.32 -0.51 -15.63 16 17 C -0.25 -7.10 9.58 -15.06 -0.14 -7.25 16 18 H 0.06 1.73 7.85 -52.49 -0.41 1.32 16 19 C 0.01 0.15 5.04 -17.43 -0.09 0.06 16 20 N -0.90 -27.07 11.10 55.49 0.62 -26.46 16 21 Si 0.90 22.22 29.57 -169.99 -5.03 17.19 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 C 0.19 4.74 4.99 -3.71 -0.02 4.73 16 26 C -0.15 -3.32 4.71 -26.61 -0.13 -3.45 16 27 C 0.52 8.19 7.02 -10.86 -0.08 8.12 16 28 O -0.49 -10.45 15.78 -15.01 -0.24 -10.68 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.46 7.87 -51.92 -0.41 0.05 16 36 H 0.10 0.89 8.11 -51.92 -0.42 0.47 16 37 H 0.09 1.10 8.12 -51.93 -0.42 0.68 16 38 H 0.40 6.12 7.19 -40.82 -0.29 5.82 16 39 H 0.07 1.15 6.17 -51.93 -0.32 0.83 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.37 3.48 9.12 45.56 0.42 3.90 16 42 H 0.06 1.03 7.66 -51.93 -0.40 0.64 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 45 H 0.01 0.26 6.89 -51.93 -0.36 -0.09 16 46 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.08 2.46 6.15 -51.92 -0.32 2.14 16 48 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16 49 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 50 H 0.08 1.77 6.23 -51.93 -0.32 1.45 16 LS Contribution 385.70 15.07 5.81 5.81 Total: -1.00 -37.23 385.70 -8.59 -45.82 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -7.41 Total: 9.14 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: -0.44 Total: 14.27 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -0.69 Total: -62.54 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.84 Total: -29.69 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.23 -8.59 -45.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733914716.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.045 kcal (2) G-P(sol) polarization free energy of solvation -37.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds