Wall clock time and date at job start Sat Apr 11 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46756 * 124.35100 * 2 1 4 4 C 1.54482 * 105.47403 * 163.00980 * 3 2 1 5 5 C 1.54617 * 101.79929 * 25.39897 * 4 3 2 6 6 H 1.09004 * 110.48716 * 93.89863 * 5 4 3 7 7 C 1.52997 * 110.48958 * 216.54079 * 5 4 3 8 8 C 1.50699 * 109.47512 * 184.99538 * 7 5 4 9 9 O 1.21286 * 119.99715 * 0.02562 * 8 7 5 10 10 N 1.34769 * 120.00329 * 179.97438 * 8 7 5 11 11 C 1.46504 * 120.00281 * 174.89640 * 10 8 7 12 12 C 1.53001 * 109.45563 * 302.69011 * 11 10 8 13 13 O 1.42906 * 109.47164 * 300.72949 * 12 11 10 14 14 C 1.53042 * 109.46065 * 182.73304 * 11 10 8 15 15 C 1.53193 * 109.30992 * 301.34208 * 14 11 10 16 16 N 1.46923 * 108.77844 * 305.36602 * 15 14 11 17 17 C 1.36942 * 120.63233 * 233.63596 * 16 15 14 18 18 H 1.07996 * 119.99968 * 31.69141 * 17 16 15 19 19 C 1.38808 * 119.99584 * 211.69714 * 17 16 15 20 20 N 1.31623 * 120.00439 * 11.03369 * 19 17 16 21 21 Si 1.86798 * 119.99757 * 191.03715 * 19 17 16 22 22 H 1.48504 * 109.47290 * 59.99842 * 21 19 17 23 23 H 1.48508 * 109.47411 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47212 * 299.99837 * 21 19 17 25 25 C 1.46923 * 118.73835 * 53.61000 * 16 15 14 26 26 C 1.53032 * 109.45881 * 62.66201 * 11 10 8 27 27 C 1.34416 * 124.34841 * 180.02562 * 2 1 3 28 28 O 1.21286 * 124.94683 * 0.38613 * 27 2 1 29 29 H 1.08994 * 109.47574 * 89.99537 * 1 2 3 30 30 H 1.09009 * 109.46870 * 209.99910 * 1 2 3 31 31 H 1.08995 * 109.46961 * 329.99130 * 1 2 3 32 32 H 1.09004 * 110.24558 * 44.01056 * 3 2 1 33 33 H 1.08996 * 110.32469 * 282.05023 * 3 2 1 34 34 H 1.09003 * 110.96782 * 143.54250 * 4 3 2 35 35 H 1.09008 * 110.96940 * 267.26032 * 4 3 2 36 36 H 1.09001 * 109.47457 * 305.00375 * 7 5 4 37 37 H 1.09006 * 109.47037 * 65.00425 * 7 5 4 38 38 H 0.97002 * 120.00011 * 354.90078 * 10 8 7 39 39 H 1.08995 * 109.47600 * 60.73725 * 12 11 10 40 40 H 1.09007 * 109.46970 * 180.73411 * 12 11 10 41 41 H 0.96698 * 113.99514 * 180.02562 * 13 12 11 42 42 H 1.08996 * 109.50068 * 61.29532 * 14 11 10 43 43 H 1.08997 * 109.49488 * 181.39266 * 14 11 10 44 44 H 1.09005 * 109.58919 * 185.57939 * 15 14 11 45 45 H 1.08998 * 109.70250 * 65.22534 * 15 14 11 46 46 H 0.97002 * 120.00012 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.58847 * 186.60689 * 25 16 15 48 48 H 1.09004 * 109.70637 * 66.24595 * 25 16 15 49 49 H 1.09004 * 109.49709 * 178.60917 * 26 11 10 50 50 H 1.09004 * 109.50199 * 298.67280 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7012 0.7485 0.4350 5 6 3.6905 -0.7380 0.0098 6 1 4.1202 -0.8533 -0.9853 7 6 4.4528 -1.5912 1.0257 8 6 4.5337 -3.0116 0.5288 9 8 4.0315 -3.3119 -0.5336 10 7 5.1649 -3.9479 1.2644 11 6 5.1477 -5.3493 0.8375 12 6 3.6993 -5.8243 0.7064 13 8 3.0371 -5.6869 1.9653 14 6 5.8735 -6.2076 1.8762 15 6 7.3133 -5.7073 2.0300 16 7 7.9524 -5.6916 0.7071 17 6 9.1419 -6.3376 0.4992 18 1 9.3745 -7.2332 1.0559 19 6 10.0486 -5.8409 -0.4271 20 7 9.8713 -4.6440 -0.9452 21 14 11.5204 -6.8713 -0.9383 22 1 11.0484 -8.1423 -1.5442 23 1 12.3293 -6.1203 -1.9319 24 1 12.3533 -7.1706 0.2541 25 6 7.2908 -4.9703 -0.3886 26 6 5.8512 -5.4788 -0.5153 27 6 2.2234 -1.1098 -0.0005 28 8 1.7946 -2.2443 -0.0077 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.8987 1.9381 0.7106 33 1 2.3306 1.6446 -0.9996 34 1 4.4754 1.3010 -0.0974 35 1 3.8277 0.8449 1.5135 36 1 5.4593 -1.1926 1.1524 37 1 3.9306 -1.5702 1.9823 38 1 5.6306 -3.6940 2.0766 39 1 3.1854 -5.2214 -0.0422 40 1 3.6863 -6.8708 0.4014 41 1 2.1126 -5.9705 1.9564 42 1 5.3583 -6.1333 2.8338 43 1 5.8826 -7.2467 1.5471 44 1 7.8632 -6.3747 2.6935 45 1 7.3097 -4.6999 2.4461 46 1 10.5052 -4.2968 -1.5922 47 1 7.8257 -5.1514 -1.3209 48 1 7.2831 -3.9017 -0.1733 49 1 5.8606 -6.5248 -0.8219 50 1 5.3198 -4.8862 -1.2600 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733914717.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:00 Heat of formation + Delta-G solvation = -88.899674 kcal Electronic energy + Delta-G solvation = -31934.775757 eV Core-core repulsion = 27769.844087 eV Total energy + Delta-G solvation = -4164.931670 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.71283 -39.70187 -37.31780 -36.31735 -35.93097 -33.97127 -33.69274 -31.84993 -30.63887 -29.74902 -29.33712 -27.05890 -26.59838 -25.35301 -23.77805 -22.20026 -21.81829 -21.02949 -20.23968 -19.17958 -18.49165 -17.25538 -17.02043 -16.69041 -16.50050 -16.24389 -15.47619 -14.94282 -14.90685 -14.62426 -14.17667 -14.00324 -13.87071 -13.57126 -13.37727 -13.31906 -13.05125 -12.84066 -12.77335 -12.62607 -12.45719 -12.36597 -12.18365 -11.74808 -11.66834 -11.55764 -11.28386 -11.10739 -11.06812 -10.78272 -10.68083 -10.32460 -10.19144 -9.96479 -9.75256 -9.61190 -9.51767 -9.43286 -8.83278 -8.76876 -8.42259 -8.30241 -6.54774 -5.73494 -3.21489 2.70678 2.91227 3.27663 3.40458 3.45757 3.46933 3.66735 4.25289 4.27329 4.52409 4.56923 4.65098 4.81872 5.01522 5.05776 5.14747 5.25701 5.30524 5.35328 5.41377 5.47829 5.50222 5.54741 5.59433 5.65176 5.69310 5.73851 5.82338 5.92137 5.99049 6.14277 6.24096 6.39250 6.42313 6.48653 6.63715 6.77111 6.77884 6.91558 7.00962 7.03137 7.26119 7.48041 7.78082 7.83939 7.95871 8.16500 8.28883 8.53137 8.88258 9.27772 9.89349 10.48251 11.34098 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016833 B = 0.003197 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.955566 B = 8756.698039 C = 9795.921011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.636 5.636 3 C 0.105 3.895 4 C -0.131 4.131 5 C -0.105 4.105 6 H 0.117 0.883 7 C -0.124 4.124 8 C 0.518 3.482 9 O -0.524 6.524 10 N -0.705 5.705 11 C 0.198 3.802 12 C 0.063 3.937 13 O -0.568 6.568 14 C -0.133 4.133 15 C 0.146 3.854 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.062 0.938 19 C 0.005 3.995 20 N -0.903 5.903 21 Si 0.904 3.096 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.184 3.816 26 C -0.152 4.152 27 C 0.519 3.481 28 O -0.497 6.497 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.395 0.605 39 H 0.069 0.931 40 H 0.041 0.959 41 H 0.368 0.632 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.014 0.986 46 H 0.253 0.747 47 H 0.084 0.916 48 H 0.018 0.982 49 H 0.057 0.943 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.590 12.213 4.987 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.373 5.373 3 C -0.018 4.018 4 C -0.169 4.169 5 C -0.126 4.126 6 H 0.135 0.865 7 C -0.165 4.165 8 C 0.304 3.696 9 O -0.400 6.400 10 N -0.356 5.356 11 C 0.112 3.888 12 C -0.016 4.016 13 O -0.372 6.372 14 C -0.173 4.173 15 C 0.020 3.980 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.080 0.920 19 C -0.194 4.194 20 N -0.547 5.547 21 Si 0.734 3.266 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.058 3.942 26 C -0.192 4.192 27 C 0.305 3.695 28 O -0.369 6.369 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.213 0.787 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.032 0.968 46 H 0.063 0.937 47 H 0.102 0.898 48 H 0.036 0.964 49 H 0.076 0.924 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.566 11.665 4.269 20.706 hybrid contribution 0.402 -0.466 -0.121 0.627 sum -16.164 11.199 4.148 20.097 Atomic orbital electron populations 1.21459 0.78520 1.02725 1.01571 1.48202 1.06191 1.07505 1.75380 1.22031 0.90754 0.87393 1.01624 1.22719 0.96536 0.94879 1.02742 1.21711 0.93955 0.94618 1.02364 0.86468 1.21517 1.02263 0.93527 0.99200 1.20134 0.78026 0.86717 0.84767 1.90639 1.45969 1.81488 1.21940 1.45817 1.54729 1.07306 1.27783 1.20201 0.91940 0.80449 0.96212 1.22753 0.94044 0.98924 0.85873 1.86438 1.27969 1.89288 1.33515 1.22231 0.97981 0.99272 0.97782 1.20886 0.90796 0.97185 0.89175 1.44033 1.22159 1.61582 1.03688 1.19120 0.93162 1.04090 1.21935 0.92014 1.25157 0.97488 0.95499 1.01249 1.69977 1.37231 1.15515 1.32024 0.86360 0.82571 0.79597 0.78107 1.21044 1.21662 1.20928 1.20630 0.87033 0.93091 0.93448 1.22591 1.00045 1.01556 0.94999 1.20785 0.88836 0.84327 0.75514 1.90768 1.77974 1.20634 1.47568 0.92968 0.90896 0.91412 0.90623 0.91279 0.88842 0.89755 0.88045 0.89244 0.77027 0.91284 0.94107 0.78656 0.91843 0.91277 0.92737 0.96806 0.93650 0.89784 0.96402 0.92422 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 10.96 59.85 0.66 1.49 16 2 N -0.64 -6.66 3.33 -180.26 -0.60 -7.26 16 3 C 0.11 0.73 7.35 -3.13 -0.02 0.71 16 4 C -0.13 -0.94 6.70 -25.10 -0.17 -1.11 16 5 C -0.10 -1.23 2.54 -90.61 -0.23 -1.46 16 6 H 0.12 1.53 7.90 -51.93 -0.41 1.12 16 7 C -0.12 -1.56 5.09 -27.88 -0.14 -1.70 16 8 C 0.52 8.92 6.70 -10.99 -0.07 8.84 16 9 O -0.52 -10.63 10.30 -15.84 -0.16 -10.79 16 10 N -0.71 -12.15 3.98 -47.57 -0.19 -12.34 16 11 C 0.20 3.67 0.44 -131.78 -0.06 3.61 16 12 C 0.06 1.09 5.68 37.16 0.21 1.30 16 13 O -0.57 -9.08 12.84 -35.23 -0.45 -9.53 16 14 C -0.13 -2.43 4.85 -26.61 -0.13 -2.56 16 15 C 0.15 3.05 6.24 -3.71 -0.02 3.02 16 16 N -0.59 -14.86 2.98 -172.32 -0.51 -15.37 16 17 C -0.25 -6.98 9.57 -15.06 -0.14 -7.13 16 18 H 0.06 1.67 7.85 -52.49 -0.41 1.26 16 19 C 0.00 0.13 5.04 -17.43 -0.09 0.05 16 20 N -0.90 -26.31 11.10 55.49 0.62 -25.69 16 21 Si 0.90 21.88 29.57 -169.99 -5.03 16.86 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.18 4.52 4.99 -3.71 -0.02 4.50 16 26 C -0.15 -3.23 4.71 -26.61 -0.13 -3.35 16 27 C 0.52 7.36 7.29 -10.83 -0.08 7.28 16 28 O -0.50 -9.29 15.20 -15.84 -0.24 -9.53 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.71 7.93 -51.92 -0.41 0.29 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.52 7.91 -51.92 -0.41 0.11 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 38 H 0.40 6.27 7.20 -40.82 -0.29 5.97 16 39 H 0.07 1.36 6.17 -51.93 -0.32 1.04 16 40 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.37 4.41 9.12 45.56 0.42 4.82 16 42 H 0.06 1.08 7.66 -51.93 -0.40 0.68 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 45 H 0.01 0.29 6.90 -51.93 -0.36 -0.07 16 46 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.08 2.35 6.14 -51.93 -0.32 2.03 16 48 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16 49 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 50 H 0.07 1.61 6.23 -51.93 -0.32 1.29 16 LS Contribution 385.18 15.07 5.80 5.80 Total: -1.00 -35.88 385.18 -8.62 -44.49 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -7.42 Total: 9.87 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -0.43 Total: 13.50 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.69 Total: -60.67 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.86 Total: -29.86 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.88 -8.62 -44.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733914717.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.405 kcal (2) G-P(sol) polarization free energy of solvation -35.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds