Wall clock time and date at job start Sat Apr 11 2020 05:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46756 * 124.35100 * 2 1 4 4 C 1.54482 * 105.47403 * 163.00980 * 3 2 1 5 5 C 1.54617 * 101.79929 * 25.39897 * 4 3 2 6 6 H 1.09004 * 110.48716 * 93.89863 * 5 4 3 7 7 C 1.52997 * 110.48958 * 216.54079 * 5 4 3 8 8 C 1.50699 * 109.47512 * 184.99538 * 7 5 4 9 9 O 1.21286 * 119.99715 * 0.02562 * 8 7 5 10 10 N 1.34769 * 120.00329 * 179.97438 * 8 7 5 11 11 C 1.46504 * 120.00281 * 174.89640 * 10 8 7 12 12 C 1.53001 * 109.45563 * 302.69011 * 11 10 8 13 13 O 1.42906 * 109.47164 * 300.72949 * 12 11 10 14 14 C 1.53042 * 109.46065 * 182.73304 * 11 10 8 15 15 C 1.53193 * 109.30992 * 301.34208 * 14 11 10 16 16 N 1.46923 * 108.77844 * 305.36602 * 15 14 11 17 17 C 1.36942 * 120.63233 * 233.63596 * 16 15 14 18 18 H 1.07996 * 119.99968 * 31.69141 * 17 16 15 19 19 C 1.38808 * 119.99584 * 211.69714 * 17 16 15 20 20 N 1.31623 * 120.00439 * 11.03369 * 19 17 16 21 21 Si 1.86798 * 119.99757 * 191.03715 * 19 17 16 22 22 H 1.48504 * 109.47290 * 59.99842 * 21 19 17 23 23 H 1.48508 * 109.47411 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47212 * 299.99837 * 21 19 17 25 25 C 1.46923 * 118.73835 * 53.61000 * 16 15 14 26 26 C 1.53032 * 109.45881 * 62.66201 * 11 10 8 27 27 C 1.34416 * 124.34841 * 180.02562 * 2 1 3 28 28 O 1.21286 * 124.94683 * 0.38613 * 27 2 1 29 29 H 1.08994 * 109.47574 * 89.99537 * 1 2 3 30 30 H 1.09009 * 109.46870 * 209.99910 * 1 2 3 31 31 H 1.08995 * 109.46961 * 329.99130 * 1 2 3 32 32 H 1.09004 * 110.24558 * 44.01056 * 3 2 1 33 33 H 1.08996 * 110.32469 * 282.05023 * 3 2 1 34 34 H 1.09003 * 110.96782 * 143.54250 * 4 3 2 35 35 H 1.09008 * 110.96940 * 267.26032 * 4 3 2 36 36 H 1.09001 * 109.47457 * 305.00375 * 7 5 4 37 37 H 1.09006 * 109.47037 * 65.00425 * 7 5 4 38 38 H 0.97002 * 120.00011 * 354.90078 * 10 8 7 39 39 H 1.08995 * 109.47600 * 60.73725 * 12 11 10 40 40 H 1.09007 * 109.46970 * 180.73411 * 12 11 10 41 41 H 0.96698 * 113.99514 * 180.02562 * 13 12 11 42 42 H 1.08996 * 109.50068 * 61.29532 * 14 11 10 43 43 H 1.08997 * 109.49488 * 181.39266 * 14 11 10 44 44 H 1.09005 * 109.58919 * 185.57939 * 15 14 11 45 45 H 1.08998 * 109.70250 * 65.22534 * 15 14 11 46 46 H 0.97002 * 120.00012 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.58847 * 186.60689 * 25 16 15 48 48 H 1.09004 * 109.70637 * 66.24595 * 25 16 15 49 49 H 1.09004 * 109.49709 * 178.60917 * 26 11 10 50 50 H 1.09004 * 109.50199 * 298.67280 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7012 0.7485 0.4350 5 6 3.6905 -0.7380 0.0098 6 1 4.1202 -0.8533 -0.9853 7 6 4.4528 -1.5912 1.0257 8 6 4.5337 -3.0116 0.5288 9 8 4.0315 -3.3119 -0.5336 10 7 5.1649 -3.9479 1.2644 11 6 5.1477 -5.3493 0.8375 12 6 3.6993 -5.8243 0.7064 13 8 3.0371 -5.6869 1.9653 14 6 5.8735 -6.2076 1.8762 15 6 7.3133 -5.7073 2.0300 16 7 7.9524 -5.6916 0.7071 17 6 9.1419 -6.3376 0.4992 18 1 9.3745 -7.2332 1.0559 19 6 10.0486 -5.8409 -0.4271 20 7 9.8713 -4.6440 -0.9452 21 14 11.5204 -6.8713 -0.9383 22 1 11.0484 -8.1423 -1.5442 23 1 12.3293 -6.1203 -1.9319 24 1 12.3533 -7.1706 0.2541 25 6 7.2908 -4.9703 -0.3886 26 6 5.8512 -5.4788 -0.5153 27 6 2.2234 -1.1098 -0.0005 28 8 1.7946 -2.2443 -0.0077 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.8987 1.9381 0.7106 33 1 2.3306 1.6446 -0.9996 34 1 4.4754 1.3010 -0.0974 35 1 3.8277 0.8449 1.5135 36 1 5.4593 -1.1926 1.1524 37 1 3.9306 -1.5702 1.9823 38 1 5.6306 -3.6940 2.0766 39 1 3.1854 -5.2214 -0.0422 40 1 3.6863 -6.8708 0.4014 41 1 2.1126 -5.9705 1.9564 42 1 5.3583 -6.1333 2.8338 43 1 5.8826 -7.2467 1.5471 44 1 7.8632 -6.3747 2.6935 45 1 7.3097 -4.6999 2.4461 46 1 10.5052 -4.2968 -1.5922 47 1 7.8257 -5.1514 -1.3209 48 1 7.2831 -3.9017 -0.1733 49 1 5.8606 -6.5248 -0.8219 50 1 5.3198 -4.8862 -1.2600 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733914717.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:59 Heat of formation + Delta-G solvation = -115.598470 kcal Electronic energy + Delta-G solvation = -31935.933504 eV Core-core repulsion = 27769.844087 eV Total energy + Delta-G solvation = -4166.089417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.77987 -41.00873 -38.80944 -37.42238 -37.31550 -35.56883 -34.68598 -33.58271 -32.21758 -31.47830 -30.37359 -28.35637 -27.83065 -26.23559 -25.63089 -23.93106 -22.86652 -22.35050 -21.66957 -20.16038 -20.08471 -18.83524 -18.30136 -17.98858 -17.55730 -17.34783 -16.87487 -16.46752 -16.31608 -15.94280 -15.64588 -15.35708 -15.20754 -14.91387 -14.73302 -14.60656 -14.49187 -14.21068 -13.93324 -13.88476 -13.40812 -13.34972 -13.22174 -13.15164 -13.10764 -12.94150 -12.64312 -12.57758 -12.49108 -12.25455 -12.23167 -12.02618 -11.82353 -11.79769 -11.40381 -11.25868 -11.01721 -10.59769 -10.52780 -10.20146 -9.76706 -9.61910 -8.58981 -7.84317 -5.35378 1.47028 1.49659 1.55778 1.68001 1.97030 2.16219 2.39568 2.52094 3.27412 3.33776 3.43115 3.54170 3.73626 3.78499 3.90297 4.04603 4.06902 4.25659 4.30098 4.38031 4.40284 4.46818 4.51275 4.56556 4.60471 4.65120 4.68157 4.76361 4.78922 4.80852 4.84752 4.90099 5.00339 5.06064 5.12628 5.18170 5.21739 5.25705 5.33141 5.48529 5.65615 5.69227 5.72794 5.83149 6.17793 6.43073 6.82279 6.84307 7.17773 7.31363 7.56884 7.87429 8.41409 9.20981 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016833 B = 0.003197 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.955566 B = 8756.698039 C = 9795.921011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.632 5.632 3 C 0.100 3.900 4 C -0.118 4.118 5 C -0.107 4.107 6 H 0.096 0.904 7 C -0.117 4.117 8 C 0.506 3.494 9 O -0.559 6.559 10 N -0.705 5.705 11 C 0.199 3.801 12 C 0.077 3.923 13 O -0.571 6.571 14 C -0.117 4.117 15 C 0.144 3.856 16 N -0.607 5.607 17 C -0.265 4.265 18 H 0.066 0.934 19 C -0.048 4.048 20 N -0.933 5.933 21 Si 0.968 3.032 22 H -0.281 1.281 23 H -0.295 1.295 24 H -0.273 1.273 25 C 0.201 3.799 26 C -0.138 4.138 27 C 0.504 3.496 28 O -0.557 6.557 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.403 0.597 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.388 0.612 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.025 0.975 46 H 0.249 0.751 47 H 0.044 0.956 48 H 0.000 1.000 49 H 0.052 0.948 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.074 13.641 6.880 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.368 5.368 3 C -0.021 4.021 4 C -0.156 4.156 5 C -0.129 4.129 6 H 0.114 0.886 7 C -0.158 4.158 8 C 0.293 3.707 9 O -0.437 6.437 10 N -0.357 5.357 11 C 0.112 3.888 12 C -0.002 4.002 13 O -0.377 6.377 14 C -0.156 4.156 15 C 0.019 3.981 16 N -0.331 5.331 17 C -0.395 4.395 18 H 0.083 0.917 19 C -0.244 4.244 20 N -0.579 5.579 21 Si 0.796 3.204 22 H -0.207 1.207 23 H -0.221 1.221 24 H -0.198 1.198 25 C 0.075 3.925 26 C -0.178 4.178 27 C 0.291 3.709 28 O -0.434 6.434 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.142 0.858 37 H 0.124 0.876 38 H 0.239 0.761 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.236 0.764 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.043 0.957 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.018 0.982 49 H 0.071 0.929 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.080 13.141 6.207 22.426 hybrid contribution 0.467 -0.871 -0.708 1.215 sum -16.613 12.270 5.499 21.372 Atomic orbital electron populations 1.21615 0.77565 1.03568 1.02004 1.48399 1.07145 1.07791 1.73418 1.22348 0.90022 0.86384 1.03383 1.22777 0.97443 0.91170 1.04162 1.21726 0.92231 0.97713 1.01269 0.88583 1.21562 1.03896 0.90428 0.99864 1.21017 0.76951 0.88438 0.84252 1.90627 1.47180 1.82357 1.23574 1.45820 1.54925 1.06842 1.28105 1.20045 0.92508 0.81739 0.94488 1.22419 0.92989 0.98881 0.85906 1.86369 1.29578 1.89508 1.32283 1.22067 0.96240 0.98711 0.98631 1.21036 0.91908 0.98006 0.87156 1.44224 1.21986 1.61452 1.05394 1.19463 0.93841 1.04366 1.21816 0.91653 1.25904 1.00259 0.96574 1.01621 1.70143 1.38065 1.17066 1.32592 0.85349 0.79416 0.77933 0.77737 1.20720 1.22103 1.19829 1.20251 0.88312 0.92178 0.91777 1.22351 0.98060 1.00582 0.96831 1.21288 0.90245 0.84323 0.75028 1.90724 1.79091 1.23019 1.50546 0.92787 0.92804 0.87768 0.87404 0.90080 0.86783 0.87894 0.85835 0.87605 0.76131 0.93849 0.92987 0.76429 0.89544 0.91589 0.92292 0.95748 0.94234 0.93782 0.98180 0.92928 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.46 10.96 127.77 1.40 2.86 16 2 N -0.63 -12.29 3.33 -842.82 -2.81 -15.10 16 3 C 0.10 1.05 7.35 86.83 0.64 1.69 16 4 C -0.12 -1.33 6.70 31.65 0.21 -1.11 16 5 C -0.11 -2.45 2.54 -10.78 -0.03 -2.47 16 6 H 0.10 2.58 7.90 -2.38 -0.02 2.56 16 7 C -0.12 -2.82 5.09 29.85 0.15 -2.67 16 8 C 0.51 17.62 6.70 87.66 0.59 18.21 16 9 O -0.56 -23.69 10.30 17.40 0.18 -23.51 16 10 N -0.71 -24.08 3.98 -422.81 -1.68 -25.76 16 11 C 0.20 7.34 0.44 3.63 0.00 7.34 16 12 C 0.08 2.66 5.68 71.98 0.41 3.07 16 13 O -0.57 -17.37 12.84 -148.98 -1.91 -19.29 16 14 C -0.12 -4.11 4.85 30.67 0.15 -3.96 16 15 C 0.14 5.86 6.24 86.36 0.54 6.40 16 16 N -0.61 -30.73 2.98 -699.09 -2.09 -32.81 16 17 C -0.26 -14.66 9.57 84.03 0.80 -13.86 16 18 H 0.07 3.51 7.85 -2.91 -0.02 3.49 16 19 C -0.05 -2.71 5.04 84.86 0.43 -2.28 16 20 N -0.93 -55.75 11.10 21.65 0.24 -55.51 16 21 Si 0.97 45.40 29.57 68.60 2.03 47.42 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 25 C 0.20 10.23 4.99 86.37 0.43 10.66 16 26 C -0.14 -6.05 4.71 30.67 0.14 -5.91 16 27 C 0.50 14.32 7.29 87.92 0.64 14.96 16 28 O -0.56 -21.68 15.20 17.41 0.26 -21.41 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 1.05 7.93 -2.38 -0.02 1.03 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.10 0.82 7.91 -2.38 -0.02 0.80 16 36 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.11 2.21 8.12 -2.38 -0.02 2.19 16 38 H 0.40 12.28 7.20 -92.71 -0.67 11.61 16 39 H 0.04 1.76 6.17 -2.39 -0.01 1.74 16 40 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.39 8.66 9.12 -74.06 -0.68 7.99 16 42 H 0.09 2.69 7.66 -2.39 -0.02 2.67 16 43 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 44 H 0.06 2.33 7.93 -2.38 -0.02 2.31 16 45 H 0.02 0.96 6.90 -2.39 -0.02 0.94 16 46 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 47 H 0.04 2.58 6.14 -2.39 -0.01 2.57 16 48 H 0.00 0.01 7.74 -2.38 -0.02 -0.01 16 49 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 50 H 0.06 2.77 6.23 -2.38 -0.01 2.76 16 Total: -1.00 -81.70 385.18 0.35 -81.35 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: -0.38 Total: 31.70 kcal Atomic # 6 Polarization: 26.41 SS G_CDS: 6.51 Total: 32.91 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -6.34 Total: -129.18 kcal Atomic # 8 Polarization: -62.74 SS G_CDS: -1.47 Total: -64.21 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -81.70 0.35 -81.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733914717.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.253 kcal (2) G-P(sol) polarization free energy of solvation -81.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds