Wall clock time and date at job start Sat Apr 11 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46895 * 111.00042 * 2 1 4 4 C 1.50699 * 109.47320 * 293.95602 * 3 2 1 5 5 O 1.21290 * 119.99729 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00347 * 180.02562 * 4 3 2 7 7 C 1.37094 * 120.00620 * 179.97438 * 6 4 3 8 8 H 1.08001 * 119.99651 * 359.97438 * 7 6 4 9 9 C 1.38951 * 120.00695 * 179.97438 * 7 6 4 10 10 N 1.31403 * 120.00382 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 119.99533 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47294 * 90.00152 * 11 9 7 13 13 H 1.48502 * 109.47303 * 209.99822 * 11 9 7 14 14 H 1.48500 * 109.47606 * 330.00585 * 11 9 7 15 15 C 1.46897 * 111.00225 * 123.95597 * 2 1 3 16 16 C 1.53050 * 109.46023 * 66.04400 * 15 2 1 17 17 C 1.53188 * 109.31052 * 178.61799 * 16 15 2 18 18 N 1.46924 * 108.77956 * 54.63506 * 17 16 15 19 19 C 1.34779 * 120.63345 * 126.36745 * 18 17 16 20 20 O 1.21284 * 119.99688 * 359.97438 * 19 18 17 21 21 C 1.50697 * 120.00150 * 180.02562 * 19 18 17 22 22 H 1.09003 * 110.45569 * 302.59837 * 21 19 18 23 23 C 1.54510 * 110.50940 * 180.02562 * 21 19 18 24 24 C 1.54477 * 104.18108 * 241.28242 * 23 21 19 25 25 O 1.44642 * 104.69773 * 336.19290 * 24 23 21 26 26 C 1.44415 * 105.37338 * 40.34325 * 25 24 23 27 27 C 1.46922 * 118.73891 * 306.64146 * 18 17 16 28 28 C 1.52764 * 109.00865 * 53.30848 * 27 18 17 29 29 H 1.09002 * 109.47135 * 296.04198 * 1 2 3 30 30 H 1.09000 * 109.47475 * 56.04458 * 1 2 3 31 31 H 1.09007 * 109.47156 * 176.04697 * 1 2 3 32 32 H 1.08993 * 109.47401 * 53.95642 * 3 2 1 33 33 H 1.08999 * 109.47077 * 173.95622 * 3 2 1 34 34 H 0.97001 * 119.99910 * 0.02562 * 6 4 3 35 35 H 0.96999 * 120.00556 * 179.97438 * 10 9 7 36 36 H 1.08995 * 109.46286 * 186.01794 * 15 2 1 37 37 H 1.08996 * 109.49722 * 58.66519 * 16 15 2 38 38 H 1.08995 * 109.52017 * 298.58369 * 16 15 2 39 39 H 1.09001 * 109.58801 * 294.84543 * 17 16 15 40 40 H 1.09004 * 109.58535 * 174.42269 * 17 16 15 41 41 H 1.09002 * 110.51305 * 359.97438 * 23 21 19 42 42 H 1.08994 * 110.51141 * 122.57102 * 23 21 19 43 43 H 1.09006 * 110.37498 * 94.92285 * 24 23 21 44 44 H 1.09000 * 110.37254 * 217.25804 * 24 23 21 45 45 H 1.08998 * 110.37627 * 200.73568 * 26 25 24 46 46 H 1.09003 * 110.37369 * 78.39849 * 26 25 24 47 47 H 1.08998 * 109.58764 * 173.14128 * 27 18 17 48 48 H 1.08998 * 109.58660 * 293.57118 * 27 18 17 49 49 H 1.09002 * 109.56852 * 185.55541 * 28 27 18 50 50 H 1.09002 * 109.38414 * 65.51358 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0053 1.4453 -2.1411 6 7 2.0188 3.3198 -1.5237 7 6 1.6931 3.9344 -2.7051 8 1 1.1308 3.3986 -3.4554 9 6 2.0864 5.2468 -2.9372 10 7 1.7738 5.8360 -4.0693 11 14 3.0584 6.1738 -1.6390 12 1 4.5110 5.9610 -1.8624 13 1 2.7506 7.6236 -1.7316 14 1 2.6865 5.6738 -0.2911 15 6 1.9954 -0.7660 1.1375 16 6 1.6312 -2.2430 0.9699 17 6 2.2113 -3.0438 2.1400 18 7 1.7455 -2.4465 3.3989 19 6 1.1289 -3.2009 4.3302 20 8 0.9536 -4.3846 4.1327 21 6 0.6564 -2.5734 5.6162 22 1 1.4884 -2.0994 6.1371 23 6 -0.0152 -3.6314 6.5200 24 6 -1.4647 -3.1233 6.6847 25 8 -1.3841 -1.6994 6.4435 26 6 -0.4666 -1.5496 5.3384 27 6 1.9591 -1.0099 3.6209 28 6 1.3868 -0.2330 2.4366 29 1 -0.3633 0.4512 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3634 -1.0253 -0.0709 32 1 1.5612 1.9273 0.8309 33 1 3.0797 1.3443 0.1082 34 1 2.5248 3.8008 -0.8502 35 1 2.0480 6.7522 -4.2312 36 1 3.0797 -0.6614 1.1751 37 1 2.0453 -2.6158 0.0332 38 1 0.5467 -2.3515 0.9571 39 1 3.3001 -3.0111 2.1009 40 1 1.8723 -4.0779 2.0788 41 1 -0.0059 -4.6082 6.0365 42 1 0.4846 -3.6800 7.4874 43 1 -2.1181 -3.5954 5.9509 44 1 -1.8232 -3.3198 7.6951 45 1 -0.0610 -0.5381 5.3163 46 1 -0.9655 -1.7798 4.3971 47 1 1.4537 -0.7025 4.5363 48 1 3.0269 -0.8080 3.7050 49 1 1.6269 0.8249 2.5436 50 1 0.3044 -0.3595 2.4100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734266345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:07 Heat of formation + Delta-G solvation = -91.809058 kcal Electronic energy + Delta-G solvation = -30633.239087 eV Core-core repulsion = 26468.181257 eV Total energy + Delta-G solvation = -4165.057831 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.19489 -39.61412 -38.73623 -37.86634 -35.86104 -33.96345 -33.07557 -31.76274 -31.61875 -31.27138 -29.59380 -28.10794 -26.28075 -24.86257 -23.79309 -23.75629 -23.13701 -21.90745 -20.23492 -19.35784 -19.00221 -18.25647 -18.12837 -16.95988 -16.49343 -16.18088 -16.04789 -15.48373 -15.23195 -15.17210 -15.01691 -14.87012 -14.47385 -14.22856 -14.12666 -13.74009 -13.46665 -13.23997 -13.10897 -13.00997 -12.64297 -12.57206 -12.26228 -12.22944 -11.93853 -11.83171 -11.75975 -11.60127 -11.39658 -11.32758 -11.25072 -11.07331 -10.94793 -10.62388 -10.57436 -10.28790 -10.13092 -9.99679 -9.55920 -9.06533 -8.59799 -8.20180 -7.95390 -6.32922 -3.84394 2.17526 2.52474 2.99450 3.04294 3.12831 3.46068 3.71016 3.83282 3.89465 4.08006 4.09498 4.26459 4.37505 4.52241 4.60920 4.64820 4.72229 4.76973 4.79081 4.90673 4.96583 5.05921 5.13694 5.17647 5.22827 5.26349 5.30740 5.34310 5.39695 5.50420 5.51139 5.54835 5.58185 5.62567 5.69855 5.75729 5.84477 5.90437 5.96908 6.05146 6.19807 6.27155 6.49235 6.96610 7.13373 7.26900 7.56578 7.74244 8.12836 8.58262 8.93584 9.40496 9.81582 10.80221 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.002296 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.393490 B =12190.296966 C =12746.118728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.509 5.509 3 C 0.042 3.958 4 C 0.452 3.548 5 O -0.559 6.559 6 N -0.591 5.591 7 C -0.304 4.304 8 H 0.120 0.880 9 C 0.041 3.959 10 N -0.881 5.881 11 Si 0.880 3.120 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.270 1.270 15 C 0.085 3.915 16 C -0.124 4.124 17 C 0.112 3.888 18 N -0.608 5.608 19 C 0.524 3.476 20 O -0.538 6.538 21 C -0.146 4.146 22 H 0.110 0.890 23 C -0.147 4.147 24 C 0.044 3.956 25 O -0.371 6.371 26 C 0.057 3.943 27 C 0.104 3.896 28 C -0.175 4.175 29 H 0.019 0.981 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.991 -15.130 23.719 28.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.232 5.232 3 C -0.089 4.089 4 C 0.238 3.762 5 O -0.440 6.440 6 N -0.231 5.231 7 C -0.433 4.433 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.521 5.521 11 Si 0.706 3.294 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.196 1.196 15 C -0.024 4.024 16 C -0.163 4.163 17 C -0.010 4.010 18 N -0.341 5.341 19 C 0.312 3.688 20 O -0.415 6.415 21 C -0.168 4.168 22 H 0.128 0.872 23 C -0.185 4.185 24 C -0.033 4.033 25 O -0.290 6.290 26 C -0.020 4.020 27 C -0.019 4.019 28 C -0.215 4.215 29 H 0.037 0.963 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.202 0.798 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.114 0.886 45 H 0.120 0.880 46 H 0.084 0.916 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.098 0.902 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.518 -16.030 22.539 27.662 hybrid contribution 0.772 1.397 1.532 2.212 sum 1.290 -14.633 24.070 28.199 Atomic orbital electron populations 1.22612 0.86794 1.02175 1.01500 1.61792 1.08861 1.12458 1.40038 1.21910 1.00691 0.89474 0.96873 1.19642 0.85129 0.82435 0.89002 1.90533 1.42615 1.64089 1.46788 1.42213 1.51028 1.11998 1.17868 1.19419 1.33843 0.96300 0.93729 0.86288 1.25039 0.97910 0.96511 0.96749 1.69615 1.45644 1.13611 1.23254 0.86673 0.80896 0.80502 0.81292 1.19620 1.20209 1.19566 1.21766 0.99499 0.93625 0.87506 1.21953 1.01958 0.94052 0.98303 1.21685 0.98900 0.98601 0.81825 1.48123 1.58305 1.09393 1.18273 1.20306 0.77059 0.86635 0.84822 1.90676 1.56303 1.15644 1.78853 1.22716 1.00718 0.98363 0.94964 0.87224 1.22968 0.95425 1.00239 0.99825 1.23522 0.96287 0.81283 1.02170 1.89185 1.64959 1.23579 1.51235 1.23492 0.88533 0.98976 0.91004 1.21797 1.01578 0.79461 0.99045 1.22645 1.02271 1.00459 0.96123 0.96300 0.88640 0.91983 0.93327 0.89356 0.79777 0.91611 0.89874 0.89351 0.91258 0.91139 0.88728 0.88008 0.90079 0.91887 0.88629 0.88010 0.91644 0.89531 0.90774 0.90167 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.42 60.06 0.51 0.75 16 2 N -0.51 -7.41 4.45 -236.28 -1.05 -8.46 16 3 C 0.04 0.65 5.02 -4.98 -0.02 0.63 16 4 C 0.45 9.89 7.47 -10.99 -0.08 9.80 16 5 O -0.56 -14.49 13.91 5.55 0.08 -14.42 16 6 N -0.59 -13.69 5.09 -10.97 -0.06 -13.75 16 7 C -0.30 -8.45 10.16 -14.93 -0.15 -8.60 16 8 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 9 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 10 N -0.88 -25.48 13.96 55.50 0.77 -24.71 16 11 Si 0.88 18.98 27.73 -169.99 -4.71 14.26 16 12 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 15 C 0.09 0.88 2.15 -67.67 -0.15 0.74 16 16 C -0.12 -1.22 5.25 -26.61 -0.14 -1.36 16 17 C 0.11 0.99 6.43 -3.71 -0.02 0.97 16 18 N -0.61 -5.14 2.98 -173.04 -0.52 -5.65 16 19 C 0.52 5.10 6.95 -10.99 -0.08 5.03 16 20 O -0.54 -7.04 14.69 5.55 0.08 -6.96 16 21 C -0.15 -1.07 2.55 -90.21 -0.23 -1.30 16 22 H 0.11 0.61 7.86 -51.93 -0.41 0.20 16 23 C -0.15 -1.06 6.67 -25.16 -0.17 -1.23 16 24 C 0.04 0.32 7.65 37.93 0.29 0.61 16 25 O -0.37 -3.47 11.65 -35.23 -0.41 -3.88 16 26 C 0.06 0.43 6.11 37.93 0.23 0.66 16 27 C 0.10 0.68 5.97 -3.93 -0.02 0.66 16 28 C -0.18 -1.45 4.57 -26.83 -0.12 -1.58 16 29 H 0.02 0.24 6.24 -51.93 -0.32 -0.08 16 30 H 0.10 1.79 5.83 -51.93 -0.30 1.49 16 31 H 0.06 0.84 6.50 -51.92 -0.34 0.50 16 32 H 0.05 0.66 7.03 -51.93 -0.36 0.29 16 33 H 0.09 1.19 7.93 -51.93 -0.41 0.78 16 34 H 0.37 7.47 5.76 -40.82 -0.24 7.23 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.75 6.62 -51.93 -0.34 0.41 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.95 7.00 -51.93 -0.36 0.59 16 41 H 0.10 0.89 6.50 -51.93 -0.34 0.55 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.60 6.56 -51.93 -0.34 0.26 16 46 H 0.07 0.55 7.86 -51.93 -0.41 0.14 16 47 H 0.09 0.43 4.00 -51.93 -0.21 0.23 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.08 0.64 6.85 -51.93 -0.36 0.29 16 50 H 0.08 0.69 6.41 -51.93 -0.33 0.36 16 LS Contribution 377.51 15.07 5.69 5.69 Total: -1.00 -34.16 377.51 -7.96 -42.12 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -7.58 Total: 8.97 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -0.26 Total: 6.78 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.85 Total: -52.57 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.25 Total: -25.25 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.26 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.16 -7.96 -42.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734266345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.689 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds