Wall clock time and date at job start Sat Apr 11 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46895 * 111.00042 * 2 1 4 4 C 1.50699 * 109.47320 * 293.95602 * 3 2 1 5 5 O 1.21290 * 119.99729 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00347 * 180.02562 * 4 3 2 7 7 C 1.37094 * 120.00620 * 179.97438 * 6 4 3 8 8 H 1.08001 * 119.99651 * 359.97438 * 7 6 4 9 9 C 1.38951 * 120.00695 * 179.97438 * 7 6 4 10 10 N 1.31403 * 120.00382 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 119.99533 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47294 * 90.00152 * 11 9 7 13 13 H 1.48502 * 109.47303 * 209.99822 * 11 9 7 14 14 H 1.48500 * 109.47606 * 330.00585 * 11 9 7 15 15 C 1.46897 * 111.00225 * 123.95597 * 2 1 3 16 16 C 1.53050 * 109.46023 * 66.04400 * 15 2 1 17 17 C 1.53188 * 109.31052 * 178.61799 * 16 15 2 18 18 N 1.46924 * 108.77956 * 54.63506 * 17 16 15 19 19 C 1.34779 * 120.63345 * 126.36745 * 18 17 16 20 20 O 1.21284 * 119.99688 * 359.97438 * 19 18 17 21 21 C 1.50697 * 120.00150 * 180.02562 * 19 18 17 22 22 H 1.09003 * 110.45569 * 302.59837 * 21 19 18 23 23 C 1.54510 * 110.50940 * 180.02562 * 21 19 18 24 24 C 1.54477 * 104.18108 * 241.28242 * 23 21 19 25 25 O 1.44642 * 104.69773 * 336.19290 * 24 23 21 26 26 C 1.44415 * 105.37338 * 40.34325 * 25 24 23 27 27 C 1.46922 * 118.73891 * 306.64146 * 18 17 16 28 28 C 1.52764 * 109.00865 * 53.30848 * 27 18 17 29 29 H 1.09002 * 109.47135 * 296.04198 * 1 2 3 30 30 H 1.09000 * 109.47475 * 56.04458 * 1 2 3 31 31 H 1.09007 * 109.47156 * 176.04697 * 1 2 3 32 32 H 1.08993 * 109.47401 * 53.95642 * 3 2 1 33 33 H 1.08999 * 109.47077 * 173.95622 * 3 2 1 34 34 H 0.97001 * 119.99910 * 0.02562 * 6 4 3 35 35 H 0.96999 * 120.00556 * 179.97438 * 10 9 7 36 36 H 1.08995 * 109.46286 * 186.01794 * 15 2 1 37 37 H 1.08996 * 109.49722 * 58.66519 * 16 15 2 38 38 H 1.08995 * 109.52017 * 298.58369 * 16 15 2 39 39 H 1.09001 * 109.58801 * 294.84543 * 17 16 15 40 40 H 1.09004 * 109.58535 * 174.42269 * 17 16 15 41 41 H 1.09002 * 110.51305 * 359.97438 * 23 21 19 42 42 H 1.08994 * 110.51141 * 122.57102 * 23 21 19 43 43 H 1.09006 * 110.37498 * 94.92285 * 24 23 21 44 44 H 1.09000 * 110.37254 * 217.25804 * 24 23 21 45 45 H 1.08998 * 110.37627 * 200.73568 * 26 25 24 46 46 H 1.09003 * 110.37369 * 78.39849 * 26 25 24 47 47 H 1.08998 * 109.58764 * 173.14128 * 27 18 17 48 48 H 1.08998 * 109.58660 * 293.57118 * 27 18 17 49 49 H 1.09002 * 109.56852 * 185.55541 * 28 27 18 50 50 H 1.09002 * 109.38414 * 65.51358 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0053 1.4453 -2.1411 6 7 2.0188 3.3198 -1.5237 7 6 1.6931 3.9344 -2.7051 8 1 1.1308 3.3986 -3.4554 9 6 2.0864 5.2468 -2.9372 10 7 1.7738 5.8360 -4.0693 11 14 3.0584 6.1738 -1.6390 12 1 4.5110 5.9610 -1.8624 13 1 2.7506 7.6236 -1.7316 14 1 2.6865 5.6738 -0.2911 15 6 1.9954 -0.7660 1.1375 16 6 1.6312 -2.2430 0.9699 17 6 2.2113 -3.0438 2.1400 18 7 1.7455 -2.4465 3.3989 19 6 1.1289 -3.2009 4.3302 20 8 0.9536 -4.3846 4.1327 21 6 0.6564 -2.5734 5.6162 22 1 1.4884 -2.0994 6.1371 23 6 -0.0152 -3.6314 6.5200 24 6 -1.4647 -3.1233 6.6847 25 8 -1.3841 -1.6994 6.4435 26 6 -0.4666 -1.5496 5.3384 27 6 1.9591 -1.0099 3.6209 28 6 1.3868 -0.2330 2.4366 29 1 -0.3633 0.4512 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3634 -1.0253 -0.0709 32 1 1.5612 1.9273 0.8309 33 1 3.0797 1.3443 0.1082 34 1 2.5248 3.8008 -0.8502 35 1 2.0480 6.7522 -4.2312 36 1 3.0797 -0.6614 1.1751 37 1 2.0453 -2.6158 0.0332 38 1 0.5467 -2.3515 0.9571 39 1 3.3001 -3.0111 2.1009 40 1 1.8723 -4.0779 2.0788 41 1 -0.0059 -4.6082 6.0365 42 1 0.4846 -3.6800 7.4874 43 1 -2.1181 -3.5954 5.9509 44 1 -1.8232 -3.3198 7.6951 45 1 -0.0610 -0.5381 5.3163 46 1 -0.9655 -1.7798 4.3971 47 1 1.4537 -0.7025 4.5363 48 1 3.0269 -0.8080 3.7050 49 1 1.6269 0.8249 2.5436 50 1 0.3044 -0.3595 2.4100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734266345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:06 Heat of formation + Delta-G solvation = -119.228406 kcal Electronic energy + Delta-G solvation = -30634.428080 eV Core-core repulsion = 26468.181257 eV Total energy + Delta-G solvation = -4166.246823 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.88372 -40.70538 -39.80347 -38.97646 -36.87678 -35.86908 -33.78901 -33.70684 -32.45554 -31.98359 -30.20587 -29.44793 -27.35211 -26.36969 -24.68829 -24.40538 -23.93217 -22.68898 -21.24399 -20.98080 -20.10134 -19.69937 -18.78175 -17.87953 -17.52876 -17.02482 -16.76084 -16.70390 -16.58979 -16.20869 -15.98058 -15.76960 -15.59380 -15.19586 -15.10022 -14.88567 -14.57334 -14.44382 -14.29702 -13.98225 -13.83954 -13.69325 -13.38384 -13.09732 -12.92950 -12.79825 -12.68291 -12.51781 -12.38760 -12.33131 -12.28353 -12.07669 -11.95630 -11.82552 -11.74115 -11.47639 -11.36973 -10.91014 -10.86676 -10.33298 -10.20695 -9.75068 -9.08625 -8.38765 -5.99511 1.31556 1.38103 1.46664 1.47031 1.88880 2.00461 2.25527 2.63985 2.90642 3.17287 3.27677 3.31505 3.54098 3.71864 3.77327 3.87247 3.99761 4.01785 4.11151 4.16987 4.22337 4.27143 4.30482 4.35431 4.41972 4.46522 4.54000 4.55984 4.65649 4.68983 4.73316 4.78222 4.80187 4.83652 4.89336 4.98366 5.01106 5.02474 5.10739 5.22515 5.33381 5.51504 5.55997 5.69650 5.94080 6.06070 6.25167 6.32156 6.63175 6.92210 7.04887 7.43776 8.02381 8.79073 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.002296 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.393490 B =12190.296966 C =12746.118728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.534 5.534 3 C 0.055 3.945 4 C 0.450 3.550 5 O -0.608 6.608 6 N -0.593 5.593 7 C -0.326 4.326 8 H 0.052 0.948 9 C -0.019 4.019 10 N -0.937 5.937 11 Si 0.967 3.033 12 H -0.257 1.257 13 H -0.278 1.278 14 H -0.227 1.227 15 C 0.088 3.912 16 C -0.118 4.118 17 C 0.118 3.882 18 N -0.605 5.605 19 C 0.520 3.480 20 O -0.580 6.580 21 C -0.140 4.140 22 H 0.138 0.862 23 C -0.146 4.146 24 C 0.041 3.959 25 O -0.389 6.389 26 C 0.057 3.943 27 C 0.105 3.895 28 C -0.170 4.170 29 H 0.040 0.960 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.390 0.610 35 H 0.278 0.722 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.054 0.946 44 H 0.113 0.887 45 H 0.125 0.875 46 H 0.050 0.950 47 H 0.107 0.893 48 H 0.098 0.902 49 H 0.096 0.904 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.484 -14.078 28.364 31.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.257 5.257 3 C -0.075 4.075 4 C 0.238 3.762 5 O -0.492 6.492 6 N -0.235 5.235 7 C -0.455 4.455 8 H 0.070 0.930 9 C -0.217 4.217 10 N -0.578 5.578 11 Si 0.786 3.214 12 H -0.182 1.182 13 H -0.203 1.203 14 H -0.150 1.150 15 C -0.020 4.020 16 C -0.156 4.156 17 C -0.005 4.005 18 N -0.337 5.337 19 C 0.309 3.691 20 O -0.460 6.460 21 C -0.161 4.161 22 H 0.155 0.845 23 C -0.184 4.184 24 C -0.035 4.035 25 O -0.308 6.308 26 C -0.020 4.020 27 C -0.017 4.017 28 C -0.210 4.210 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.140 0.860 34 H 0.225 0.775 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.118 0.882 43 H 0.072 0.928 44 H 0.131 0.869 45 H 0.143 0.857 46 H 0.069 0.931 47 H 0.125 0.875 48 H 0.116 0.884 49 H 0.114 0.886 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.018 -14.987 27.211 31.212 hybrid contribution -0.105 0.923 -0.043 0.930 sum 2.913 -14.064 27.168 30.731 Atomic orbital electron populations 1.22398 0.87606 1.01805 1.00374 1.61687 1.08427 1.12441 1.43100 1.21840 1.02855 0.89654 0.93197 1.21018 0.82806 0.81719 0.90685 1.90528 1.44232 1.65187 1.49277 1.42033 1.51918 1.12698 1.16863 1.18970 1.34710 0.97025 0.94793 0.92951 1.26153 0.98766 0.97033 0.99741 1.69810 1.47369 1.14350 1.26297 0.85344 0.78945 0.77965 0.79114 1.18152 1.20323 1.15046 1.21842 1.00401 0.92697 0.87082 1.21861 1.00902 0.94429 0.98455 1.21579 0.99778 0.97463 0.81694 1.48214 1.57523 1.10356 1.17642 1.20760 0.76501 0.86223 0.85650 1.90664 1.57963 1.17622 1.79799 1.22754 1.01427 0.98178 0.93756 0.84456 1.22956 0.95578 0.99280 1.00568 1.23622 0.96395 0.80561 1.02968 1.89167 1.65502 1.24417 1.51674 1.23574 0.88245 1.00180 0.89994 1.21982 1.03190 0.77541 0.98957 1.22592 1.01525 1.01476 0.95397 0.94158 0.93343 0.91546 0.90007 0.85952 0.77470 0.91249 0.88072 0.90356 0.92888 0.89259 0.90526 0.89970 0.88224 0.92789 0.86878 0.85697 0.93132 0.87520 0.88430 0.88601 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 8.42 127.69 1.08 1.84 16 2 N -0.53 -14.46 4.45 -901.47 -4.01 -18.47 16 3 C 0.06 1.53 5.02 85.56 0.43 1.96 16 4 C 0.45 19.53 7.47 87.66 0.66 20.19 16 5 O -0.61 -33.05 13.91 -3.06 -0.04 -33.09 16 6 N -0.59 -27.05 5.09 -306.99 -1.56 -28.61 16 7 C -0.33 -18.83 10.16 84.04 0.85 -17.98 16 8 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 9 C -0.02 -1.03 5.50 84.93 0.47 -0.56 16 10 N -0.94 -56.32 13.96 21.66 0.30 -56.02 16 11 Si 0.97 37.73 27.73 68.60 1.90 39.63 16 12 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 13 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 14 H -0.23 -7.25 6.52 99.48 0.65 -6.60 16 15 C 0.09 1.53 2.15 44.95 0.10 1.62 16 16 C -0.12 -2.16 5.25 30.67 0.16 -2.00 16 17 C 0.12 1.87 6.43 86.36 0.56 2.42 16 18 N -0.61 -8.55 2.98 -819.75 -2.44 -10.99 16 19 C 0.52 9.20 6.95 87.66 0.61 9.81 16 20 O -0.58 -15.12 14.69 -3.04 -0.04 -15.16 16 21 C -0.14 -1.66 2.55 -10.53 -0.03 -1.69 16 22 H 0.14 0.89 7.86 -2.39 -0.02 0.87 16 23 C -0.15 -1.87 6.67 31.61 0.21 -1.66 16 24 C 0.04 0.54 7.65 72.48 0.55 1.10 16 25 O -0.39 -6.44 11.65 -148.98 -1.74 -8.17 16 26 C 0.06 0.71 6.11 72.48 0.44 1.15 16 27 C 0.11 0.86 5.97 86.22 0.51 1.38 16 28 C -0.17 -2.07 4.57 30.53 0.14 -1.93 16 29 H 0.04 0.98 6.24 -2.39 -0.01 0.96 16 30 H 0.05 1.89 5.83 -2.39 -0.01 1.87 16 31 H 0.07 1.82 6.50 -2.38 -0.02 1.81 16 32 H 0.08 1.78 7.03 -2.39 -0.02 1.76 16 33 H 0.12 2.63 7.93 -2.39 -0.02 2.61 16 34 H 0.39 14.41 5.76 -92.71 -0.53 13.88 16 35 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.10 1.46 7.93 -2.39 -0.02 1.44 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.14 6.62 -2.39 -0.02 1.12 16 39 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.53 7.00 -2.39 -0.02 1.51 16 41 H 0.08 1.42 6.50 -2.39 -0.02 1.40 16 42 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.13 0.93 6.56 -2.39 -0.02 0.91 16 46 H 0.05 0.78 7.86 -2.39 -0.02 0.76 16 47 H 0.11 0.49 4.00 -2.39 -0.01 0.48 16 48 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.10 0.95 6.85 -2.39 -0.02 0.93 16 50 H 0.06 0.96 6.41 -2.39 -0.02 0.95 16 Total: -1.00 -83.13 377.51 -0.52 -83.64 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.38 Total: 31.61 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 6.74 Total: 15.64 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -7.71 Total: -114.10 kcal Atomic # 8 Polarization: -54.60 SS G_CDS: -1.82 Total: -56.42 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 1.90 Total: 39.63 kcal Total: -83.13 -0.52 -83.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734266345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.587 kcal (2) G-P(sol) polarization free energy of solvation -83.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds