Wall clock time and date at job start Sat Apr 11 2020 05:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46500 * 120.00019 * 2 1 4 4 C 1.53002 * 109.47270 * 89.99508 * 3 2 1 5 5 H 1.09008 * 109.46695 * 60.00052 * 4 3 2 6 6 O 1.42901 * 109.47077 * 300.00602 * 4 3 2 7 7 C 1.52993 * 109.47169 * 179.97438 * 4 3 2 8 8 N 1.46905 * 109.47039 * 185.00340 * 7 4 3 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 4 10 10 C 1.50697 * 109.46943 * 180.02562 * 9 8 7 11 11 O 1.21292 * 120.00024 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99767 * 180.02562 * 10 9 8 13 13 C 1.37097 * 119.99759 * 179.97438 * 12 10 9 14 14 H 1.08000 * 120.00171 * 359.97438 * 13 12 10 15 15 C 1.38951 * 120.00074 * 179.97438 * 13 12 10 16 16 N 1.31416 * 119.99768 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00310 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47100 * 90.00351 * 17 15 13 19 19 H 1.48501 * 109.47251 * 210.00371 * 17 15 13 20 20 H 1.48503 * 109.46881 * 330.00485 * 17 15 13 21 21 C 1.34778 * 119.99924 * 179.97438 * 2 1 3 22 22 O 1.21282 * 119.99791 * 180.02562 * 21 2 1 23 23 C 1.50697 * 120.00249 * 0.02562 * 21 2 1 24 24 H 1.09000 * 115.55857 * 34.34083 * 23 21 2 25 25 C 1.53118 * 117.51307 * 248.61045 * 23 21 2 26 26 C 1.52455 * 117.51391 * 180.14281 * 23 21 2 27 27 C 1.53259 * 128.58809 * 349.85296 * 26 23 21 28 28 C 1.53889 * 86.88302 * 194.88487 * 27 26 23 29 29 C 1.53258 * 128.58805 * 225.04475 * 26 23 21 30 30 H 1.09005 * 109.46620 * 90.00471 * 1 2 3 31 31 H 1.09001 * 109.46740 * 209.99927 * 1 2 3 32 32 H 1.08996 * 109.46792 * 330.00013 * 1 2 3 33 33 H 1.08998 * 109.46665 * 329.99857 * 3 2 1 34 34 H 1.08994 * 109.47087 * 210.00294 * 3 2 1 35 35 H 0.96697 * 113.99359 * 299.99075 * 6 4 3 36 36 H 1.09001 * 109.47393 * 65.00621 * 7 4 3 37 37 H 1.08998 * 109.47408 * 305.00267 * 7 4 3 38 38 H 1.00901 * 110.99869 * 56.04956 * 8 7 4 39 39 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 40 40 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 41 41 H 0.96997 * 120.00713 * 359.97438 * 12 10 9 42 42 H 0.96999 * 119.99907 * 179.97438 * 16 15 13 43 43 H 1.08994 * 117.51906 * 359.97438 * 25 23 21 44 44 H 1.09006 * 117.51367 * 145.06029 * 25 23 21 45 45 H 1.08992 * 113.64086 * 309.38293 * 27 26 23 46 46 H 1.09000 * 113.64679 * 80.38607 * 27 26 23 47 47 H 1.09005 * 113.58676 * 270.38792 * 28 27 26 48 48 H 1.09002 * 113.65787 * 139.58214 * 28 27 26 49 49 H 1.08996 * 113.64786 * 279.61804 * 29 26 23 50 50 H 1.08996 * 113.64240 * 50.61803 * 29 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 1 3.0416 0.9508 1.9564 6 8 1.2038 1.8813 2.1161 7 6 3.2180 3.0351 1.4425 8 7 3.5674 3.3988 2.8223 9 6 4.3046 4.6689 2.8613 10 6 4.6454 5.0081 4.2895 11 8 4.3070 4.2652 5.1866 12 7 5.3253 6.1375 4.5700 13 6 5.6349 6.4463 5.8694 14 1 5.3336 5.7849 6.6682 15 6 6.3363 7.6104 6.1586 16 7 6.7025 8.4155 5.1866 17 14 6.7576 8.0317 7.9290 18 1 8.0770 7.4458 8.2768 19 1 6.8141 9.5072 8.0868 20 1 5.7164 7.4769 8.8310 21 6 2.1390 -1.1672 0.0005 22 8 3.3518 -1.1672 0.0010 23 6 1.3855 -2.4723 0.0005 24 1 0.4474 -2.4738 -0.5546 25 6 1.4603 -3.3322 1.2652 26 6 2.2044 -3.7583 0.0045 27 6 3.7130 -3.9315 -0.2025 28 6 3.4270 -5.4286 -0.4148 29 6 2.0060 -5.0205 -0.8419 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6085 2.0283 -0.5139 34 1 3.1499 1.1384 -0.5139 35 1 0.6268 2.5440 1.7125 36 1 2.5935 3.8157 1.0080 37 1 4.1288 2.9285 0.8532 38 1 4.0924 2.6618 3.2686 39 1 5.2229 4.5739 2.2818 40 1 3.6872 5.4605 2.4368 41 1 5.5956 6.7318 3.8527 42 1 7.1918 9.2283 5.3885 43 1 2.0548 -2.9541 2.0969 44 1 0.5714 -3.8993 1.5419 45 1 4.0928 -3.4286 -1.0917 46 1 4.3036 -3.7214 0.6893 47 1 3.4551 -6.0128 0.5050 48 1 4.0123 -5.8761 -1.2181 49 1 1.2282 -5.6833 -0.4628 50 1 1.9107 -4.8206 -1.9091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734528073.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:16 Heat of formation + Delta-G solvation = -65.832270 kcal Electronic energy + Delta-G solvation = -29048.093265 eV Core-core repulsion = 24884.161872 eV Total energy + Delta-G solvation = -4163.931393 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.79562 -39.16769 -38.31390 -37.58257 -35.47049 -34.69310 -33.99520 -33.75117 -31.22462 -30.68583 -27.79948 -26.77131 -25.98183 -25.38937 -23.95351 -23.39717 -22.74207 -21.77763 -19.55324 -19.21626 -18.49825 -17.87390 -17.58235 -16.92462 -16.36735 -16.05123 -15.85636 -15.52464 -15.36889 -15.25841 -14.84596 -14.61221 -14.38149 -14.12958 -13.76699 -13.40971 -13.30191 -13.03838 -12.94028 -12.74715 -12.64840 -12.43239 -12.30771 -11.98249 -11.86628 -11.81180 -11.72130 -11.51177 -11.47274 -11.14822 -11.01395 -10.67286 -10.42688 -10.38281 -10.36786 -10.19163 -10.08777 -9.83239 -9.48289 -8.81023 -8.40906 -8.01415 -7.92749 -6.39215 -3.79837 2.24395 2.62365 3.19970 3.28261 3.34727 3.42154 3.90417 3.94004 4.05466 4.24807 4.26815 4.32000 4.44226 4.45888 4.54440 4.60624 4.76034 4.85894 4.92045 5.00610 5.04503 5.13573 5.15555 5.20024 5.26867 5.32793 5.35302 5.38023 5.42128 5.44570 5.48960 5.56926 5.58514 5.61676 5.81519 5.86535 5.95125 5.98931 5.99130 6.10168 6.20039 6.29050 7.07787 7.21504 7.57817 7.58995 7.72913 7.95622 8.09243 8.64378 9.20745 9.57169 10.09083 10.78625 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020570 B = 0.001724 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.901937 B =16241.007223 C =16852.142602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.606 5.606 3 C 0.085 3.915 4 C 0.098 3.902 5 H 0.100 0.900 6 O -0.541 6.541 7 C 0.030 3.970 8 N -0.659 5.659 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.581 6.581 12 N -0.565 5.565 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.931 3.069 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 C 0.544 3.456 22 O -0.533 6.533 23 C -0.179 4.179 24 H 0.122 0.878 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.083 4.083 28 C -0.142 4.142 29 C -0.098 4.098 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.367 0.633 36 H 0.074 0.926 37 H 0.036 0.964 38 H 0.350 0.650 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.273 -21.635 -18.366 31.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.338 5.338 3 C -0.039 4.039 4 C 0.037 3.963 5 H 0.118 0.882 6 O -0.344 6.344 7 C -0.101 4.101 8 N -0.291 5.291 9 C -0.082 4.082 10 C 0.227 3.773 11 O -0.465 6.465 12 N -0.202 5.202 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 C 0.332 3.668 22 O -0.410 6.410 23 C -0.200 4.200 24 H 0.140 0.860 25 C -0.157 4.157 26 C -0.128 4.128 27 C -0.120 4.120 28 C -0.180 4.180 29 C -0.136 4.136 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.213 0.787 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.170 0.830 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.105 0.895 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.108 -22.109 -17.227 30.942 hybrid contribution 0.885 1.142 -0.406 1.501 sum -12.222 -20.967 -17.633 29.998 Atomic orbital electron populations 1.21822 0.79104 1.04027 1.01155 1.47586 1.07178 1.05396 1.73675 1.22170 0.98692 0.85182 0.97831 1.22284 0.85924 0.96341 0.91727 0.88247 1.86686 1.28271 1.62639 1.56841 1.22604 0.99232 0.97091 0.91172 1.59986 1.49570 1.05086 1.14500 1.21688 0.96646 0.93163 0.96728 1.19805 0.83863 0.83951 0.89729 1.90534 1.57205 1.51129 1.47592 1.41858 1.49163 1.19957 1.09187 1.19714 1.32650 1.05953 0.84504 0.87925 1.25262 0.97134 0.95862 0.99744 1.69616 1.39451 1.13299 1.32062 0.85849 0.78959 0.77381 0.82047 1.20447 1.20934 1.19404 1.19700 0.87343 0.84212 0.75532 1.90699 1.13723 1.87152 1.49414 1.22142 1.02096 0.90295 1.05500 0.86050 1.22804 1.02124 1.00104 0.90622 1.22326 0.96635 0.93449 1.00417 1.22326 0.92531 0.94524 1.02626 1.22816 0.96531 0.97033 1.01602 1.22503 0.97753 0.94187 0.99116 0.93013 0.90846 0.90363 0.90058 0.88952 0.78686 0.90733 0.94597 0.83021 0.93983 0.89687 0.77488 0.91919 0.87875 0.87558 0.89493 0.91153 0.90092 0.91243 0.91244 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 9.75 59.85 0.58 1.07 16 2 N -0.61 -5.49 2.80 -181.57 -0.51 -6.00 16 3 C 0.08 0.77 5.10 -4.04 -0.02 0.75 16 4 C 0.10 1.12 3.41 -26.73 -0.09 1.03 16 5 H 0.10 1.41 8.14 -51.92 -0.42 0.99 16 6 O -0.54 -6.42 12.01 -35.23 -0.42 -6.84 16 7 C 0.03 0.36 5.32 -3.82 -0.02 0.34 16 8 N -0.66 -11.19 6.07 -115.06 -0.70 -11.89 16 9 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 10 C 0.44 10.79 7.82 -10.99 -0.09 10.70 16 11 O -0.58 -16.42 15.78 5.55 0.09 -16.33 16 12 N -0.56 -14.68 5.29 -10.96 -0.06 -14.74 16 13 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 14 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.91 13.05 55.50 0.72 -24.18 16 17 Si 0.93 21.43 29.55 -169.99 -5.02 16.40 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 C 0.54 6.00 7.46 -10.99 -0.08 5.92 16 22 O -0.53 -7.67 14.72 5.56 0.08 -7.59 16 23 C -0.18 -1.49 4.80 -91.99 -0.44 -1.93 16 24 H 0.12 0.75 7.27 -51.93 -0.38 0.37 16 25 C -0.12 -0.94 10.24 -26.94 -0.28 -1.21 16 26 C -0.13 -1.07 2.88 -154.80 -0.45 -1.51 16 27 C -0.08 -0.77 6.47 -26.13 -0.17 -0.94 16 28 C -0.14 -0.98 8.08 -25.81 -0.21 -1.19 16 29 C -0.10 -0.63 8.10 -26.14 -0.21 -0.84 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.40 6.64 -51.93 -0.34 0.05 16 32 H 0.08 0.42 6.88 -51.93 -0.36 0.06 16 33 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.09 0.94 7.42 -51.93 -0.39 0.56 16 35 H 0.37 3.01 8.79 45.56 0.40 3.41 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.35 6.41 8.43 -39.29 -0.33 6.08 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 412.11 15.07 6.21 6.21 Total: -1.00 -35.37 412.11 -8.91 -44.28 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -7.56 Total: 15.79 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -1.74 Total: 4.89 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.54 Total: -56.81 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.25 Total: -30.76 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.37 -8.91 -44.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734528073.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.550 kcal (2) G-P(sol) polarization free energy of solvation -35.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds