Wall clock time and date at job start Sat Apr 11 2020 05:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99819 * 2 1 4 4 C 1.53005 * 109.46681 * 90.00123 * 3 2 1 5 5 H 1.08996 * 109.47053 * 304.99117 * 4 3 2 6 6 O 1.42892 * 109.47346 * 64.99671 * 4 3 2 7 7 C 1.52998 * 109.46599 * 184.99955 * 4 3 2 8 8 N 1.46907 * 109.47021 * 179.97438 * 7 4 3 9 9 C 1.46895 * 110.99969 * 179.97438 * 8 7 4 10 10 C 1.50700 * 109.47051 * 180.02562 * 9 8 7 11 11 O 1.21292 * 119.99931 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99961 * 180.02562 * 10 9 8 13 13 C 1.37090 * 119.99722 * 179.97438 * 12 10 9 14 14 H 1.07999 * 120.00228 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99996 * 179.97438 * 13 12 10 16 16 N 1.31413 * 120.00236 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99845 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47174 * 89.99684 * 17 15 13 19 19 H 1.48504 * 109.46913 * 209.99934 * 17 15 13 20 20 H 1.48501 * 109.47062 * 329.99733 * 17 15 13 21 21 C 1.34773 * 119.99953 * 179.97438 * 2 1 3 22 22 O 1.21277 * 119.99957 * 180.02562 * 21 2 1 23 23 C 1.50699 * 119.99986 * 0.02562 * 21 2 1 24 24 H 1.08998 * 115.56122 * 34.34212 * 23 21 2 25 25 C 1.53122 * 117.51345 * 248.60671 * 23 21 2 26 26 C 1.52454 * 59.85931 * 252.55120 * 25 23 21 27 27 C 1.53262 * 128.58690 * 117.59625 * 26 25 23 28 28 C 1.53885 * 86.88024 * 114.94819 * 27 26 25 29 29 C 1.53255 * 128.58655 * 242.40085 * 26 25 23 30 30 H 1.09005 * 109.46874 * 89.99688 * 1 2 3 31 31 H 1.08995 * 109.47783 * 209.99704 * 1 2 3 32 32 H 1.09001 * 109.47681 * 330.00171 * 1 2 3 33 33 H 1.08993 * 109.47089 * 329.99894 * 3 2 1 34 34 H 1.09000 * 109.46558 * 209.99353 * 3 2 1 35 35 H 0.96703 * 114.00293 * 59.99954 * 6 4 3 36 36 H 1.09003 * 109.47314 * 59.99779 * 7 4 3 37 37 H 1.09004 * 109.47259 * 299.99717 * 7 4 3 38 38 H 1.00893 * 111.00026 * 303.95479 * 8 7 4 39 39 H 1.09004 * 109.47210 * 60.00310 * 9 8 7 40 40 H 1.08997 * 109.47605 * 300.00670 * 9 8 7 41 41 H 0.96995 * 120.00015 * 359.72695 * 12 10 9 42 42 H 0.97001 * 119.99781 * 180.02562 * 16 15 13 43 43 H 1.09005 * 117.50911 * 0.02562 * 25 23 21 44 44 H 1.09005 * 117.51605 * 145.06049 * 25 23 21 45 45 H 1.09003 * 113.64845 * 229.44616 * 27 26 25 46 46 H 1.09001 * 113.64317 * 0.44854 * 27 26 25 47 47 H 1.08999 * 113.58942 * 270.39387 * 28 27 26 48 48 H 1.08999 * 113.66157 * 139.58672 * 28 27 26 49 49 H 1.08997 * 113.64477 * 359.55059 * 29 26 25 50 50 H 1.08994 * 113.64970 * 130.55380 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 1.4426 5 1 1.5061 1.7550 1.9815 6 8 3.3208 0.7725 2.0815 7 6 3.1059 3.0938 1.4444 8 7 3.3502 3.5181 2.8295 9 6 3.9790 4.8451 2.8704 10 6 4.2142 5.2455 4.3040 11 8 3.8903 4.4986 5.2032 12 7 4.7844 6.4335 4.5871 13 6 4.9979 6.7979 5.8913 14 1 4.7095 6.1330 6.6919 15 6 5.5862 8.0225 6.1831 16 7 5.7913 8.3717 7.4333 17 14 6.0856 9.1724 4.7983 18 1 4.9528 10.0753 4.4717 19 1 7.2562 9.9809 5.2241 20 1 6.4449 8.3751 3.5981 21 6 2.1388 -1.1672 0.0005 22 8 3.3516 -1.1672 0.0010 23 6 1.3853 -2.4723 0.0005 24 1 0.4473 -2.4737 -0.5545 25 6 1.4602 -3.3322 1.2652 26 6 2.2042 -3.7583 0.0046 27 6 3.7128 -3.9315 -0.2025 28 6 3.4268 -5.4285 -0.4148 29 6 2.0058 -5.0204 -0.8419 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5137 32 1 -0.3634 0.8900 0.5138 33 1 1.6084 2.0284 -0.5138 34 1 3.1499 1.1383 -0.5137 35 1 4.1835 0.6810 1.6544 36 1 2.4435 3.8092 0.9570 37 1 4.0523 3.0493 0.9054 38 1 2.4968 3.5053 3.3674 39 1 3.3231 5.5728 2.3924 40 1 4.9315 4.8123 2.3417 41 1 5.0470 7.0290 3.8679 42 1 6.2017 9.2267 7.6370 43 1 2.0541 -2.9536 2.0971 44 1 0.5713 -3.8993 1.5419 45 1 4.0927 -3.4285 -1.0918 46 1 4.3034 -3.7214 0.6893 47 1 3.4549 -6.0128 0.5050 48 1 4.0120 -5.8761 -1.2181 49 1 1.2280 -5.6832 -0.4628 50 1 1.9105 -4.8206 -1.9091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734528075.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:28 Heat of formation + Delta-G solvation = -57.956291 kcal Electronic energy + Delta-G solvation = -29193.473082 eV Core-core repulsion = 25029.883218 eV Total energy + Delta-G solvation = -4163.589864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.76469 -39.14762 -38.47146 -37.47491 -35.53836 -34.74339 -33.95489 -33.80440 -31.64605 -30.63043 -27.97048 -26.86044 -25.97004 -25.42969 -23.85109 -23.37268 -22.69365 -21.70425 -19.55003 -19.35562 -18.48064 -18.34217 -17.57688 -17.00332 -16.18670 -16.12791 -15.88803 -15.50618 -15.40479 -15.18036 -14.94467 -14.66784 -14.50638 -14.16091 -13.60889 -13.42668 -13.23056 -13.15197 -12.95605 -12.72622 -12.66585 -12.57673 -12.27986 -12.09621 -12.04237 -11.86468 -11.83075 -11.71430 -11.62360 -11.15232 -11.12056 -10.64814 -10.58475 -10.39669 -10.24067 -10.06852 -9.95682 -9.79480 -9.55343 -8.82743 -8.53640 -8.17110 -8.09000 -6.29079 -3.80369 2.30497 2.62074 3.03804 3.07316 3.15772 3.45245 3.76611 3.90162 4.03298 4.11842 4.28493 4.34504 4.46116 4.46886 4.57362 4.62145 4.70544 4.76953 4.82189 4.93928 5.02282 5.05999 5.10394 5.16985 5.22897 5.24950 5.30338 5.34876 5.38362 5.39604 5.49868 5.50271 5.57768 5.63190 5.66124 5.81567 5.89144 5.93636 5.95427 6.00901 6.11486 6.17209 7.08821 7.09744 7.56876 7.60756 7.85017 8.01817 8.16892 8.62224 8.97330 9.44595 9.85493 10.84139 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025170 B = 0.001739 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.187582 B =16096.413999 C =16439.418905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.084 3.916 4 C 0.098 3.902 5 H 0.094 0.906 6 O -0.536 6.536 7 C 0.029 3.971 8 N -0.657 5.657 9 C 0.048 3.952 10 C 0.450 3.550 11 O -0.562 6.562 12 N -0.592 5.592 13 C -0.305 4.305 14 H 0.120 0.880 15 C 0.041 3.959 16 N -0.882 5.882 17 Si 0.880 3.120 18 H -0.272 1.272 19 H -0.276 1.276 20 H -0.270 1.270 21 C 0.551 3.449 22 O -0.526 6.526 23 C -0.181 4.181 24 H 0.119 0.881 25 C -0.119 4.119 26 C -0.126 4.126 27 C -0.082 4.082 28 C -0.143 4.143 29 C -0.099 4.099 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.375 0.625 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.351 0.649 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.068 0.932 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.095 -21.455 -23.603 34.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.345 5.345 3 C -0.039 4.039 4 C 0.036 3.964 5 H 0.112 0.888 6 O -0.340 6.340 7 C -0.102 4.102 8 N -0.290 5.290 9 C -0.085 4.085 10 C 0.236 3.764 11 O -0.443 6.443 12 N -0.231 5.231 13 C -0.433 4.433 14 H 0.137 0.863 15 C -0.162 4.162 16 N -0.522 5.522 17 Si 0.707 3.293 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.195 1.195 21 C 0.340 3.660 22 O -0.402 6.402 23 C -0.202 4.202 24 H 0.137 0.863 25 C -0.156 4.156 26 C -0.127 4.127 27 C -0.119 4.119 28 C -0.180 4.180 29 C -0.136 4.136 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.223 0.777 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.171 0.829 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.104 0.896 46 H 0.090 0.910 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.499 -22.197 -22.373 33.549 hybrid contribution -0.121 2.085 -1.663 2.670 sum -11.620 -20.112 -24.037 33.426 Atomic orbital electron populations 1.21803 0.79509 1.03572 1.01587 1.47596 1.06813 1.05648 1.74411 1.22205 0.98567 0.85194 0.97969 1.22219 0.94337 0.87704 0.92104 0.88846 1.86600 1.29112 1.61802 1.56521 1.22635 1.00359 0.95963 0.91238 1.59903 1.32752 1.26369 1.09962 1.21721 1.00093 0.89962 0.96675 1.19711 0.83989 0.82893 0.89846 1.90579 1.54371 1.51777 1.47578 1.42205 1.55906 1.16879 1.08152 1.19441 1.37853 1.03248 0.82786 0.86286 1.25040 0.97506 0.97181 0.96479 1.69625 1.42994 1.22572 1.17008 0.86663 0.79284 0.81512 0.81863 1.19712 1.20169 1.19506 1.19548 0.87322 0.83919 0.75252 1.90655 1.13683 1.86971 1.48844 1.22153 1.02039 0.90474 1.05526 0.86268 1.22809 1.02081 1.00013 0.90733 1.22304 0.96636 0.93355 1.00410 1.22315 0.92553 0.94407 1.02623 1.22816 0.96502 0.97119 1.01580 1.22507 0.97768 0.94272 0.99091 0.92706 0.90713 0.90960 0.89871 0.89364 0.77700 0.94855 0.90676 0.82946 0.93944 0.89563 0.79732 0.91643 0.87637 0.87734 0.89553 0.91050 0.90100 0.91289 0.91301 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 10.01 59.85 0.60 1.03 16 2 N -0.61 -5.29 2.86 -181.57 -0.52 -5.81 16 3 C 0.08 0.72 5.11 -4.04 -0.02 0.70 16 4 C 0.10 1.05 3.42 -26.73 -0.09 0.96 16 5 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 6 O -0.54 -7.56 12.07 -43.04 -0.52 -8.08 16 7 C 0.03 0.32 5.35 -3.82 -0.02 0.30 16 8 N -0.66 -10.49 5.99 -115.05 -0.69 -11.18 16 9 C 0.05 0.82 6.17 -4.98 -0.03 0.78 16 10 C 0.45 10.49 7.82 -10.98 -0.09 10.41 16 11 O -0.56 -15.60 15.78 5.55 0.09 -15.51 16 12 N -0.59 -14.37 5.09 -10.96 -0.06 -14.43 16 13 C -0.30 -8.78 10.16 -14.93 -0.15 -8.93 16 14 H 0.12 3.92 7.39 -52.49 -0.39 3.54 16 15 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 16 N -0.88 -26.08 13.96 55.50 0.77 -25.31 16 17 Si 0.88 19.57 27.74 -169.99 -4.72 14.86 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.27 -5.48 6.51 56.52 0.37 -5.11 16 21 C 0.55 5.84 7.08 -10.99 -0.08 5.76 16 22 O -0.53 -7.09 13.69 -2.25 -0.03 -7.13 16 23 C -0.18 -1.47 4.80 -91.98 -0.44 -1.91 16 24 H 0.12 0.72 7.27 -51.93 -0.38 0.34 16 25 C -0.12 -0.94 10.23 -26.95 -0.28 -1.21 16 26 C -0.13 -1.04 2.88 -154.80 -0.45 -1.49 16 27 C -0.08 -0.75 6.47 -26.14 -0.17 -0.92 16 28 C -0.14 -0.97 8.08 -25.81 -0.21 -1.18 16 29 C -0.10 -0.63 8.10 -26.14 -0.21 -0.84 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.36 6.64 -51.93 -0.34 0.01 16 32 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 33 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 34 H 0.09 0.84 7.42 -51.93 -0.39 0.45 16 35 H 0.38 4.91 8.75 45.56 0.40 5.31 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.35 5.88 8.43 -39.30 -0.33 5.55 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.37 7.86 5.76 -40.82 -0.24 7.62 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 409.08 15.07 6.16 6.16 Total: -1.00 -36.10 409.08 -8.81 -44.91 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -7.58 Total: 17.00 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -1.73 Total: 4.50 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.49 Total: -56.73 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.46 Total: -30.71 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.72 Total: 14.86 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.10 -8.81 -44.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734528075.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.045 kcal (2) G-P(sol) polarization free energy of solvation -36.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds