Wall clock time and date at job start Sat Apr 11 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99819 * 2 1 4 4 C 1.53005 * 109.46681 * 90.00123 * 3 2 1 5 5 H 1.08996 * 109.47053 * 304.99117 * 4 3 2 6 6 O 1.42892 * 109.47346 * 64.99671 * 4 3 2 7 7 C 1.52998 * 109.46599 * 184.99955 * 4 3 2 8 8 N 1.46907 * 109.47021 * 179.97438 * 7 4 3 9 9 C 1.46895 * 110.99969 * 179.97438 * 8 7 4 10 10 C 1.50700 * 109.47051 * 180.02562 * 9 8 7 11 11 O 1.21292 * 119.99931 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99961 * 180.02562 * 10 9 8 13 13 C 1.37090 * 119.99722 * 179.97438 * 12 10 9 14 14 H 1.07999 * 120.00228 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99996 * 179.97438 * 13 12 10 16 16 N 1.31413 * 120.00236 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99845 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47174 * 89.99684 * 17 15 13 19 19 H 1.48504 * 109.46913 * 209.99934 * 17 15 13 20 20 H 1.48501 * 109.47062 * 329.99733 * 17 15 13 21 21 C 1.34773 * 119.99953 * 179.97438 * 2 1 3 22 22 O 1.21277 * 119.99957 * 180.02562 * 21 2 1 23 23 C 1.50699 * 119.99986 * 0.02562 * 21 2 1 24 24 H 1.08998 * 115.56122 * 34.34212 * 23 21 2 25 25 C 1.53122 * 117.51345 * 248.60671 * 23 21 2 26 26 C 1.52454 * 59.85931 * 252.55120 * 25 23 21 27 27 C 1.53262 * 128.58690 * 117.59625 * 26 25 23 28 28 C 1.53885 * 86.88024 * 114.94819 * 27 26 25 29 29 C 1.53255 * 128.58655 * 242.40085 * 26 25 23 30 30 H 1.09005 * 109.46874 * 89.99688 * 1 2 3 31 31 H 1.08995 * 109.47783 * 209.99704 * 1 2 3 32 32 H 1.09001 * 109.47681 * 330.00171 * 1 2 3 33 33 H 1.08993 * 109.47089 * 329.99894 * 3 2 1 34 34 H 1.09000 * 109.46558 * 209.99353 * 3 2 1 35 35 H 0.96703 * 114.00293 * 59.99954 * 6 4 3 36 36 H 1.09003 * 109.47314 * 59.99779 * 7 4 3 37 37 H 1.09004 * 109.47259 * 299.99717 * 7 4 3 38 38 H 1.00893 * 111.00026 * 303.95479 * 8 7 4 39 39 H 1.09004 * 109.47210 * 60.00310 * 9 8 7 40 40 H 1.08997 * 109.47605 * 300.00670 * 9 8 7 41 41 H 0.96995 * 120.00015 * 359.72695 * 12 10 9 42 42 H 0.97001 * 119.99781 * 180.02562 * 16 15 13 43 43 H 1.09005 * 117.50911 * 0.02562 * 25 23 21 44 44 H 1.09005 * 117.51605 * 145.06049 * 25 23 21 45 45 H 1.09003 * 113.64845 * 229.44616 * 27 26 25 46 46 H 1.09001 * 113.64317 * 0.44854 * 27 26 25 47 47 H 1.08999 * 113.58942 * 270.39387 * 28 27 26 48 48 H 1.08999 * 113.66157 * 139.58672 * 28 27 26 49 49 H 1.08997 * 113.64477 * 359.55059 * 29 26 25 50 50 H 1.08994 * 113.64970 * 130.55380 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 1.4426 5 1 1.5061 1.7550 1.9815 6 8 3.3208 0.7725 2.0815 7 6 3.1059 3.0938 1.4444 8 7 3.3502 3.5181 2.8295 9 6 3.9790 4.8451 2.8704 10 6 4.2142 5.2455 4.3040 11 8 3.8903 4.4986 5.2032 12 7 4.7844 6.4335 4.5871 13 6 4.9979 6.7979 5.8913 14 1 4.7095 6.1330 6.6919 15 6 5.5862 8.0225 6.1831 16 7 5.7913 8.3717 7.4333 17 14 6.0856 9.1724 4.7983 18 1 4.9528 10.0753 4.4717 19 1 7.2562 9.9809 5.2241 20 1 6.4449 8.3751 3.5981 21 6 2.1388 -1.1672 0.0005 22 8 3.3516 -1.1672 0.0010 23 6 1.3853 -2.4723 0.0005 24 1 0.4473 -2.4737 -0.5545 25 6 1.4602 -3.3322 1.2652 26 6 2.2042 -3.7583 0.0046 27 6 3.7128 -3.9315 -0.2025 28 6 3.4268 -5.4285 -0.4148 29 6 2.0058 -5.0204 -0.8419 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5137 32 1 -0.3634 0.8900 0.5138 33 1 1.6084 2.0284 -0.5138 34 1 3.1499 1.1383 -0.5137 35 1 4.1835 0.6810 1.6544 36 1 2.4435 3.8092 0.9570 37 1 4.0523 3.0493 0.9054 38 1 2.4968 3.5053 3.3674 39 1 3.3231 5.5728 2.3924 40 1 4.9315 4.8123 2.3417 41 1 5.0470 7.0290 3.8679 42 1 6.2017 9.2267 7.6370 43 1 2.0541 -2.9536 2.0971 44 1 0.5713 -3.8993 1.5419 45 1 4.0927 -3.4285 -1.0918 46 1 4.3034 -3.7214 0.6893 47 1 3.4549 -6.0128 0.5050 48 1 4.0120 -5.8761 -1.2181 49 1 1.2280 -5.6832 -0.4628 50 1 1.9105 -4.8206 -1.9091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734528075.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:27 Heat of formation + Delta-G solvation = -87.231228 kcal Electronic energy + Delta-G solvation = -29194.742538 eV Core-core repulsion = 25029.883218 eV Total energy + Delta-G solvation = -4164.859321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.45385 -40.35507 -39.77125 -38.46717 -36.44904 -36.09874 -35.59654 -34.58187 -33.76338 -31.58026 -29.11684 -27.58212 -26.81818 -26.54308 -25.20365 -23.97684 -23.62305 -22.57376 -21.30601 -20.30526 -20.19659 -19.10879 -18.31384 -18.11520 -17.44238 -17.15360 -16.88579 -16.75371 -16.24141 -16.17536 -16.08516 -15.70716 -15.66048 -15.17330 -14.91587 -14.84049 -14.46099 -14.43202 -13.96689 -13.74123 -13.57679 -13.26905 -13.24804 -13.19791 -13.04604 -12.92843 -12.79713 -12.59120 -12.43113 -12.42900 -12.28428 -11.99936 -11.99112 -11.52865 -11.26905 -11.17112 -11.00691 -10.71105 -10.54819 -10.43967 -10.26638 -9.51195 -9.27705 -8.42607 -6.03985 1.29436 1.34738 1.44178 1.56080 1.93951 1.99045 2.22209 2.70294 2.82090 3.13565 3.27690 3.37990 3.65673 3.69423 3.78628 3.82814 3.89934 3.95275 4.01818 4.11743 4.16605 4.21891 4.36620 4.38703 4.46361 4.50965 4.51940 4.61871 4.64350 4.69571 4.77456 4.79801 4.85730 4.89673 4.94784 5.01581 5.09048 5.11005 5.17645 5.40641 5.50488 5.51281 5.55538 5.88712 6.03772 6.34596 6.42768 6.58451 6.86479 6.87733 7.27987 7.37890 7.95225 8.75200 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025170 B = 0.001739 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.187582 B =16096.413999 C =16439.418905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.612 5.612 3 C 0.090 3.910 4 C 0.099 3.901 5 H 0.090 0.910 6 O -0.563 6.563 7 C 0.034 3.966 8 N -0.684 5.684 9 C 0.064 3.936 10 C 0.446 3.554 11 O -0.616 6.616 12 N -0.590 5.590 13 C -0.332 4.332 14 H 0.053 0.947 15 C -0.016 4.016 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.255 1.255 19 H -0.275 1.275 20 H -0.232 1.232 21 C 0.538 3.462 22 O -0.566 6.566 23 C -0.179 4.179 24 H 0.147 0.853 25 C -0.117 4.117 26 C -0.138 4.138 27 C -0.093 4.093 28 C -0.137 4.137 29 C -0.086 4.086 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.375 0.625 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.342 0.658 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.390 0.610 42 H 0.280 0.720 43 H 0.078 0.922 44 H 0.131 0.869 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.086 0.914 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.607 -20.817 -27.917 37.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.344 5.344 3 C -0.033 4.033 4 C 0.038 3.962 5 H 0.108 0.892 6 O -0.369 6.369 7 C -0.095 4.095 8 N -0.316 5.316 9 C -0.068 4.068 10 C 0.234 3.766 11 O -0.501 6.501 12 N -0.232 5.232 13 C -0.461 4.461 14 H 0.071 0.929 15 C -0.215 4.215 16 N -0.575 5.575 17 Si 0.788 3.212 18 H -0.179 1.179 19 H -0.200 1.200 20 H -0.155 1.155 21 C 0.327 3.673 22 O -0.445 6.445 23 C -0.199 4.199 24 H 0.165 0.835 25 C -0.154 4.154 26 C -0.138 4.138 27 C -0.130 4.130 28 C -0.174 4.174 29 C -0.123 4.123 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.095 0.905 35 H 0.223 0.777 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.161 0.839 39 H 0.099 0.901 40 H 0.129 0.871 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.149 0.851 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.102 0.898 48 H 0.096 0.904 49 H 0.104 0.896 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.050 -21.563 -26.727 36.736 hybrid contribution 0.316 1.824 -0.197 1.861 sum -12.734 -19.739 -26.923 35.730 Atomic orbital electron populations 1.22049 0.77343 1.04462 1.03198 1.47740 1.08231 1.05113 1.73280 1.22139 0.98895 0.85999 0.96296 1.22329 0.93451 0.87096 0.93331 0.89208 1.86570 1.29590 1.63031 1.57683 1.22678 1.01588 0.96483 0.88768 1.59884 1.32786 1.26113 1.12852 1.21630 1.02340 0.91368 0.91487 1.21065 0.81527 0.81596 0.92439 1.90555 1.55971 1.53253 1.50283 1.42018 1.56486 1.17855 1.06810 1.19013 1.39987 1.03403 0.83693 0.92927 1.26161 0.96369 0.98745 1.00176 1.69812 1.43723 1.23620 1.20339 0.85325 0.79112 0.78466 0.78340 1.17893 1.20000 1.15496 1.20082 0.87160 0.85272 0.74784 1.90635 1.15464 1.87660 1.50762 1.22238 1.02687 0.89191 1.05829 0.83514 1.22806 1.02605 1.00174 0.89831 1.22451 0.95809 0.94477 1.01099 1.22290 0.93354 0.96524 1.00832 1.22810 0.97233 0.95260 1.02118 1.22475 0.97587 0.93043 0.99191 0.90630 0.90066 0.89980 0.86602 0.90512 0.77707 0.91659 0.89866 0.83923 0.90068 0.87106 0.77396 0.91102 0.90322 0.85078 0.90987 0.93659 0.89759 0.90370 0.89562 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 10.01 127.77 1.28 1.85 16 2 N -0.61 -9.61 2.86 -846.76 -2.42 -12.03 16 3 C 0.09 1.36 5.11 86.38 0.44 1.81 16 4 C 0.10 2.00 3.42 30.60 0.10 2.10 16 5 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 6 O -0.56 -16.29 12.07 -141.51 -1.71 -18.00 16 7 C 0.03 0.68 5.35 86.30 0.46 1.14 16 8 N -0.68 -20.84 5.99 -517.92 -3.10 -23.94 16 9 C 0.06 1.98 6.17 85.56 0.53 2.51 16 10 C 0.45 20.78 7.82 87.66 0.69 21.47 16 11 O -0.62 -35.73 15.78 -3.07 -0.05 -35.78 16 12 N -0.59 -28.42 5.09 -306.98 -1.56 -29.98 16 13 C -0.33 -19.90 10.16 84.04 0.85 -19.04 16 14 H 0.05 3.77 7.39 -2.91 -0.02 3.75 16 15 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 16 N -0.93 -57.14 13.96 21.66 0.30 -56.84 16 17 Si 0.97 39.09 27.74 68.60 1.90 41.00 16 18 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 20 H -0.23 -7.88 6.51 99.48 0.65 -7.24 16 21 C 0.54 11.24 7.08 87.66 0.62 11.86 16 22 O -0.57 -15.97 13.69 4.45 0.06 -15.91 16 23 C -0.18 -2.70 4.80 -11.68 -0.06 -2.75 16 24 H 0.15 1.34 7.27 -2.39 -0.02 1.33 16 25 C -0.12 -1.77 10.23 30.45 0.31 -1.46 16 26 C -0.14 -2.19 2.88 -52.37 -0.15 -2.34 16 27 C -0.09 -1.79 6.47 30.98 0.20 -1.59 16 28 C -0.14 -1.78 8.08 31.19 0.25 -1.52 16 29 C -0.09 -0.92 8.10 30.98 0.25 -0.67 16 30 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.08 0.56 6.64 -2.39 -0.02 0.54 16 32 H 0.08 0.52 8.07 -2.39 -0.02 0.50 16 33 H 0.12 0.99 8.07 -2.39 -0.02 0.97 16 34 H 0.08 1.37 7.42 -2.39 -0.02 1.36 16 35 H 0.38 10.33 8.75 -74.06 -0.65 9.69 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 38 H 0.34 11.31 8.43 -89.70 -0.76 10.56 16 39 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.39 15.41 5.76 -92.71 -0.53 14.88 16 42 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.13 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.07 1.56 8.05 -2.39 -0.02 1.54 16 46 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -87.12 409.08 -1.35 -88.47 By element: Atomic # 1 Polarization: 51.11 SS G_CDS: -1.03 Total: 50.08 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 6.25 Total: 12.93 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -6.78 Total: -122.80 kcal Atomic # 8 Polarization: -67.99 SS G_CDS: -1.70 Total: -69.68 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 1.90 Total: 41.00 kcal Total: -87.12 -1.35 -88.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734528075.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.242 kcal (2) G-P(sol) polarization free energy of solvation -87.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds