Wall clock time and date at job start Sat Apr 11 2020 05:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 120.00052 * 2 1 4 4 C 1.52995 * 109.46877 * 269.99781 * 3 2 1 5 5 H 1.09000 * 109.47304 * 60.00475 * 4 3 2 6 6 O 1.42897 * 109.47542 * 299.99749 * 4 3 2 7 7 C 1.53004 * 109.47064 * 179.97438 * 4 3 2 8 8 N 1.46900 * 109.47430 * 185.00018 * 7 4 3 9 9 C 1.46898 * 111.00362 * 180.02562 * 8 7 4 10 10 C 1.50695 * 109.47434 * 180.02562 * 9 8 7 11 11 O 1.21295 * 119.99712 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00307 * 179.97438 * 10 9 8 13 13 C 1.37097 * 120.00126 * 179.97438 * 12 10 9 14 14 H 1.07997 * 120.00266 * 0.02562 * 13 12 10 15 15 C 1.38956 * 119.99899 * 179.97438 * 13 12 10 16 16 N 1.31409 * 119.99804 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99748 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46751 * 90.00551 * 17 15 13 19 19 H 1.48502 * 109.47210 * 210.00112 * 17 15 13 20 20 H 1.48500 * 109.47682 * 330.00734 * 17 15 13 21 21 C 1.34778 * 120.00185 * 179.97438 * 2 1 3 22 22 O 1.21284 * 119.99952 * 180.02562 * 21 2 1 23 23 C 1.50699 * 119.99974 * 359.97438 * 21 2 1 24 24 H 1.09004 * 115.57897 * 325.77332 * 23 21 2 25 25 C 1.53125 * 117.51187 * 111.53895 * 23 21 2 26 26 C 1.52460 * 117.51324 * 180.02562 * 23 21 2 27 27 C 1.53255 * 128.58417 * 134.95196 * 26 23 21 28 28 C 1.53886 * 86.88455 * 194.88651 * 27 26 23 29 29 C 1.53419 * 128.60798 * 10.06658 * 26 23 21 30 30 H 1.09001 * 109.47261 * 270.00099 * 1 2 3 31 31 H 1.09000 * 109.46917 * 30.00246 * 1 2 3 32 32 H 1.08997 * 109.46821 * 150.00046 * 1 2 3 33 33 H 1.09002 * 109.46764 * 29.99874 * 3 2 1 34 34 H 1.09000 * 109.47064 * 149.99468 * 3 2 1 35 35 H 0.96703 * 113.99702 * 300.00614 * 6 4 3 36 36 H 1.08999 * 109.47291 * 305.00361 * 7 4 3 37 37 H 1.09003 * 109.47030 * 64.99884 * 7 4 3 38 38 H 1.00906 * 110.99762 * 303.95931 * 8 7 4 39 39 H 1.08996 * 109.46983 * 300.00340 * 9 8 7 40 40 H 1.09003 * 109.46915 * 59.99809 * 9 8 7 41 41 H 0.97001 * 119.99855 * 0.02562 * 12 10 9 42 42 H 0.97005 * 119.99773 * 179.97438 * 16 15 13 43 43 H 1.09000 * 117.51199 * 359.97438 * 25 23 21 44 44 H 1.09001 * 117.51276 * 214.89817 * 25 23 21 45 45 H 1.09009 * 113.64453 * 80.39320 * 27 26 23 46 46 H 1.08997 * 113.72782 * 309.40095 * 27 26 23 47 47 H 1.09002 * 113.58838 * 139.57331 * 28 27 26 48 48 H 1.08999 * 113.58827 * 270.31714 * 28 27 26 49 49 H 1.08994 * 113.64612 * 50.62436 * 29 26 23 50 50 H 1.09008 * 113.69177 * 279.57567 * 29 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 1.5002 1.8407 -1.9563 6 8 3.2249 0.7145 -2.1161 7 6 3.2170 3.0357 -1.4425 8 7 3.3574 3.5201 -2.8222 9 6 4.0886 4.7935 -2.8614 10 6 4.2120 5.2583 -4.2896 11 8 3.7370 4.5942 -5.1866 12 7 4.8492 6.4122 -4.5701 13 6 4.9619 6.8347 -5.8694 14 1 4.5397 6.2431 -6.6682 15 6 5.6184 8.0248 -6.1586 16 7 6.1317 8.7449 -5.1865 17 14 5.7726 8.6001 -7.9290 18 1 4.6048 9.4489 -8.2771 19 1 7.0215 9.3879 -8.0866 20 1 5.8139 7.4211 -8.8309 21 6 2.1389 -1.1672 0.0005 22 8 3.3518 -1.1671 0.0010 23 6 1.3855 -2.4723 0.0017 24 1 0.4464 -2.4731 0.5551 25 6 1.4631 -3.3350 -1.2610 26 6 2.2044 -3.7583 0.0028 27 6 2.0038 -5.0184 0.8518 28 6 3.4259 -5.4276 0.4293 29 6 3.7143 -3.9316 0.2125 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6084 2.0284 0.5138 34 1 3.1499 1.1384 0.5139 35 1 4.0873 0.5460 -1.7125 36 1 2.6693 3.7711 -0.8532 37 1 4.2053 2.8851 -1.0080 38 1 3.8051 2.8282 -3.4046 39 1 3.5474 5.5412 -2.2818 40 1 5.0830 4.6546 -2.4369 41 1 5.2288 6.9434 -3.8527 42 1 6.5904 9.5755 -5.3884 43 1 2.0588 -2.9582 -2.0924 44 1 0.5751 -3.9032 -1.5381 45 1 1.2270 -5.6822 0.4722 46 1 1.9054 -4.8174 1.9185 47 1 4.0095 -5.8720 1.2356 48 1 3.4562 -6.0151 -0.4883 49 1 4.0931 -3.4261 1.1008 50 1 4.3068 -3.7252 -0.6788 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734528076.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:31 Heat of formation + Delta-G solvation = -67.899254 kcal Electronic energy + Delta-G solvation = -29156.245271 eV Core-core repulsion = 24992.224247 eV Total energy + Delta-G solvation = -4164.021024 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.75897 -39.14820 -38.30488 -37.47046 -35.52441 -34.65597 -33.95435 -33.73831 -31.21945 -30.61123 -27.83360 -26.80605 -25.97620 -25.37966 -23.96763 -23.37512 -22.69879 -21.60970 -19.53880 -19.21978 -18.47893 -17.87586 -17.59009 -16.94817 -16.24539 -16.15164 -15.86504 -15.51357 -15.41151 -15.22069 -14.70456 -14.52675 -14.43319 -14.11433 -13.73817 -13.37595 -13.35553 -12.95584 -12.90568 -12.77068 -12.62561 -12.50865 -12.27202 -12.02171 -11.84709 -11.75114 -11.68676 -11.52675 -11.48966 -11.11207 -11.00261 -10.65423 -10.39984 -10.37531 -10.32226 -10.19264 -10.06872 -9.79821 -9.48566 -8.81388 -8.41750 -8.03741 -7.93322 -6.39513 -3.80131 2.30664 2.64615 3.19792 3.28084 3.34433 3.45431 3.91980 3.93929 4.08141 4.26843 4.28052 4.36042 4.44518 4.46896 4.56659 4.63081 4.78930 4.89995 4.93716 5.05178 5.06339 5.11532 5.12536 5.22123 5.26287 5.31264 5.35061 5.36304 5.38641 5.44913 5.49453 5.57273 5.63097 5.65834 5.80153 5.87423 5.98445 6.00120 6.03792 6.10834 6.18631 6.29174 7.11917 7.22428 7.57533 7.67828 7.74469 8.01903 8.09002 8.64070 9.20420 9.56873 10.08772 10.78314 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025008 B = 0.001685 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.354508 B =16617.045044 C =17018.764312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.609 5.609 3 C 0.084 3.916 4 C 0.095 3.905 5 H 0.107 0.893 6 O -0.549 6.549 7 C 0.030 3.970 8 N -0.664 5.664 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.581 6.581 12 N -0.564 5.564 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.903 5.903 17 Si 0.931 3.069 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.553 3.447 22 O -0.531 6.531 23 C -0.180 4.180 24 H 0.120 0.880 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.099 4.099 28 C -0.143 4.143 29 C -0.081 4.081 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.374 0.626 36 H 0.078 0.922 37 H 0.030 0.970 38 H 0.356 0.644 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.068 0.932 46 H 0.084 0.916 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.476 -23.233 18.175 31.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.342 5.342 3 C -0.039 4.039 4 C 0.034 3.966 5 H 0.124 0.876 6 O -0.354 6.354 7 C -0.101 4.101 8 N -0.298 5.298 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.465 6.465 12 N -0.201 5.201 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.194 1.194 21 C 0.341 3.659 22 O -0.408 6.408 23 C -0.201 4.201 24 H 0.138 0.862 25 C -0.156 4.156 26 C -0.128 4.128 27 C -0.136 4.136 28 C -0.180 4.180 29 C -0.119 4.119 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.221 0.779 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.177 0.823 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.087 0.913 46 H 0.103 0.897 47 H 0.087 0.913 48 H 0.099 0.901 49 H 0.104 0.896 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.178 -23.208 17.157 30.951 hybrid contribution 1.403 0.827 0.265 1.650 sum -9.775 -22.382 17.422 30.000 Atomic orbital electron populations 1.21817 0.79401 1.03698 1.01589 1.47579 1.06903 1.05603 1.74106 1.22190 0.98510 0.85270 0.97956 1.22347 0.95967 0.86410 0.91844 0.87568 1.86602 1.33248 1.59181 1.56410 1.22587 0.98897 0.96801 0.91806 1.60027 1.56194 1.05518 1.08011 1.21683 0.96578 0.92876 0.97113 1.19808 0.84156 0.83721 0.89681 1.90533 1.51711 1.56659 1.47616 1.41858 1.49448 1.19641 1.09189 1.19716 1.33621 1.05022 0.84496 0.87919 1.25262 0.96773 0.96207 0.99747 1.69615 1.37568 1.15155 1.32064 0.85848 0.77572 0.78776 0.82029 1.20407 1.20952 1.19429 1.19540 0.87282 0.83947 0.75128 1.90639 1.13748 1.87043 1.49323 1.22152 1.02023 0.90426 1.05522 0.86236 1.22811 1.02085 1.00000 0.90703 1.22345 0.96600 0.93414 1.00397 1.22501 0.97732 0.94294 0.99098 1.22815 0.96517 0.97111 1.01572 1.22340 0.92548 0.94429 1.02552 0.92695 0.90741 0.90758 0.89552 0.89557 0.77853 0.90339 0.95196 0.82329 0.89702 0.93975 0.77484 0.91913 0.87676 0.87735 0.91299 0.89738 0.91303 0.90119 0.89561 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 10.01 59.85 0.60 1.06 16 2 N -0.61 -5.47 2.83 -181.57 -0.51 -5.98 16 3 C 0.08 0.76 5.15 -4.04 -0.02 0.74 16 4 C 0.10 1.08 3.47 -26.73 -0.09 0.98 16 5 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 6 O -0.55 -7.43 11.67 -43.91 -0.51 -7.94 16 7 C 0.03 0.37 5.36 -3.82 -0.02 0.34 16 8 N -0.66 -11.27 6.13 -115.06 -0.70 -11.98 16 9 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 10 C 0.44 10.77 7.82 -10.99 -0.09 10.68 16 11 O -0.58 -16.40 15.78 5.54 0.09 -16.31 16 12 N -0.56 -14.65 5.29 -10.97 -0.06 -14.71 16 13 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 14 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 15 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 17 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 C 0.55 5.90 6.97 -10.99 -0.08 5.82 16 22 O -0.53 -7.10 13.51 -3.13 -0.04 -7.15 16 23 C -0.18 -1.49 4.80 -91.98 -0.44 -1.93 16 24 H 0.12 0.74 7.26 -51.93 -0.38 0.37 16 25 C -0.12 -0.93 10.24 -26.92 -0.28 -1.21 16 26 C -0.13 -1.04 2.88 -154.69 -0.45 -1.49 16 27 C -0.10 -0.63 8.10 -26.14 -0.21 -0.84 16 28 C -0.14 -0.97 8.07 -25.81 -0.21 -1.17 16 29 C -0.08 -0.74 6.49 -26.05 -0.17 -0.91 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 32 H 0.07 0.39 6.64 -51.93 -0.34 0.04 16 33 H 0.09 0.59 8.07 -51.93 -0.42 0.17 16 34 H 0.09 0.85 7.42 -51.93 -0.39 0.46 16 35 H 0.37 4.61 8.45 45.56 0.39 4.99 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.36 6.61 7.99 -39.29 -0.31 6.30 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 50 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 LS Contribution 410.99 15.07 6.19 6.19 Total: -1.00 -34.31 410.99 -9.19 -43.50 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -7.62 Total: 17.36 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -1.72 Total: 4.80 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.55 Total: -56.81 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.47 Total: -31.40 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.31 -9.19 -43.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734528076.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.399 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds