Wall clock time and date at job start Sat Apr 11 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99999 * 2 1 4 4 H 1.08001 * 119.99948 * 202.13946 * 3 2 1 5 5 C 1.38808 * 119.99834 * 22.15377 * 3 2 1 6 6 N 1.31618 * 120.00097 * 11.54928 * 5 3 2 7 7 Si 1.86798 * 119.99798 * 191.55472 * 5 3 2 8 8 H 1.48499 * 109.47557 * 59.99357 * 7 5 3 9 9 H 1.48503 * 109.47417 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47203 * 299.99515 * 7 5 3 11 11 C 1.46498 * 119.99824 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47434 * 269.99787 * 11 2 1 13 13 H 1.08996 * 109.49988 * 55.06300 * 12 11 2 14 14 C 1.53043 * 109.49669 * 295.00119 * 12 11 2 15 15 C 1.53038 * 109.54116 * 178.68147 * 14 12 11 16 16 C 1.53194 * 109.31175 * 61.36240 * 15 14 12 17 17 N 1.46920 * 108.77749 * 305.37065 * 16 15 14 18 18 C 1.34774 * 120.63062 * 233.58557 * 17 16 15 19 19 O 1.21282 * 120.00586 * 179.97438 * 18 17 16 20 20 C 1.50706 * 120.00025 * 359.97438 * 18 17 16 21 21 H 1.09002 * 110.32857 * 302.74941 * 20 18 17 22 22 C 1.54479 * 110.37094 * 65.00068 * 20 18 17 23 23 C 1.54506 * 104.05931 * 142.92218 * 22 20 18 24 24 C 1.54481 * 104.06554 * 359.97438 * 23 22 20 25 25 H 1.08997 * 110.37154 * 94.85392 * 24 23 22 26 26 C 1.50704 * 110.37131 * 217.07499 * 24 23 22 27 27 N 1.34767 * 120.00391 * 293.45324 * 26 24 23 28 28 O 1.21285 * 119.99512 * 113.44629 * 26 24 23 29 29 O 1.44420 * 110.46721 * 180.43870 * 20 18 17 30 30 C 1.46925 * 118.74171 * 53.85627 * 17 16 15 31 31 H 1.09007 * 109.46765 * 274.22393 * 1 2 3 32 32 H 1.09001 * 109.47155 * 34.21941 * 1 2 3 33 33 H 1.08995 * 109.47407 * 154.22521 * 1 2 3 34 34 H 0.97005 * 119.99862 * 180.02562 * 6 5 3 35 35 H 1.09002 * 109.47231 * 149.99607 * 11 2 1 36 36 H 1.08997 * 109.47564 * 29.99897 * 11 2 1 37 37 H 1.09001 * 109.45792 * 58.65684 * 14 12 11 38 38 H 1.09003 * 109.45887 * 298.70278 * 14 12 11 39 39 H 1.08999 * 109.49681 * 301.41705 * 15 14 12 40 40 H 1.08996 * 109.49775 * 181.31926 * 15 14 12 41 41 H 1.08994 * 109.58967 * 185.57951 * 16 15 14 42 42 H 1.09007 * 109.69986 * 65.22669 * 16 15 14 43 43 H 1.09000 * 110.51430 * 24.27920 * 22 20 18 44 44 H 1.08997 * 110.51006 * 261.56451 * 22 20 18 45 45 H 1.09001 * 110.50942 * 241.35022 * 23 22 20 46 46 H 1.09008 * 110.62436 * 118.70257 * 23 22 20 47 47 H 0.97004 * 119.99875 * 359.97438 * 27 26 24 48 48 H 0.97001 * 120.00360 * 179.97438 * 27 26 24 49 49 H 1.09000 * 109.58725 * 65.93046 * 30 17 16 50 50 H 1.09000 * 109.58819 * 186.35196 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1700 1.2204 -0.3525 5 6 1.5324 2.3436 0.4533 6 7 0.3829 2.2705 1.0902 7 14 2.3333 4.0055 0.1594 8 1 2.4879 4.2293 -1.3005 9 1 1.4799 5.0752 0.7361 10 1 3.6687 4.0332 0.8084 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7111 1.4417 13 1 1.5064 -1.7571 1.9809 14 6 3.3826 -0.7073 2.1269 15 6 3.6121 -1.1311 3.5794 16 6 4.2833 -2.5079 3.6055 17 7 3.4665 -3.4470 2.8247 18 6 3.0519 -4.6100 3.3650 19 8 2.3777 -5.3767 2.7104 20 6 3.4261 -4.9579 4.7829 21 1 4.5098 -4.9541 4.9003 22 6 2.7746 -3.9643 5.7702 23 6 2.3948 -4.8383 6.9864 24 6 2.8611 -6.2566 6.5897 25 1 3.8582 -6.4524 6.9841 26 6 1.8865 -7.2895 7.0941 27 7 1.7415 -7.4889 8.4190 28 8 1.2326 -7.9412 6.3076 29 8 2.8856 -6.2469 5.1460 30 6 3.1153 -3.0970 1.4416 31 1 -0.3633 0.0757 1.0250 32 1 -0.3633 0.8498 -0.5779 33 1 -0.3634 -0.9254 -0.4468 34 1 -0.0486 3.0796 1.4066 35 1 3.1498 -1.1382 -0.5144 36 1 1.6084 -2.0282 -0.5147 37 1 2.9275 0.2829 2.1051 38 1 4.3373 -0.6796 1.6015 39 1 2.6552 -1.1830 4.0988 40 1 4.2557 -0.4032 4.0734 41 1 4.3591 -2.8581 4.6348 42 1 5.2795 -2.4394 3.1685 43 1 1.8844 -3.5159 5.3292 44 1 3.4874 -3.1930 6.0618 45 1 1.3168 -4.8219 7.1466 46 1 2.9181 -4.4999 7.8807 47 1 2.2648 -6.9679 9.0481 48 1 1.1139 -8.1535 8.7437 49 1 4.0174 -3.0737 0.8303 50 1 2.4203 -3.8360 1.0429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752517228.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:42 Heat of formation + Delta-G solvation = -88.992799 kcal Electronic energy + Delta-G solvation = -30997.033518 eV Core-core repulsion = 26832.097810 eV Total energy + Delta-G solvation = -4164.935708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.97645 -39.81363 -38.39737 -37.25657 -35.53182 -34.17536 -33.09281 -32.22248 -31.60277 -30.74391 -29.76861 -26.21558 -25.73680 -25.61557 -24.11254 -22.31477 -22.27589 -21.18638 -20.93209 -19.64404 -18.91699 -18.14231 -17.58000 -16.89772 -16.69621 -16.61888 -15.97064 -15.31210 -14.98548 -14.85912 -14.72031 -14.45271 -14.17475 -14.00979 -13.98035 -13.66817 -13.27848 -13.08166 -12.86096 -12.68362 -12.43584 -12.25407 -12.12411 -11.85814 -11.43591 -11.36421 -11.25933 -10.89347 -10.80639 -10.69995 -10.55334 -10.38683 -10.20846 -10.16604 -10.09039 -10.03983 -10.02827 -9.83970 -9.62419 -9.49713 -8.51424 -8.41070 -6.72866 -5.70669 -3.15305 2.23881 2.52693 2.63761 3.08147 3.36626 3.43365 3.44007 3.75322 4.00665 4.26454 4.36046 4.49710 4.50007 4.59681 4.68851 4.81606 4.97748 5.04968 5.20042 5.25032 5.29798 5.36446 5.46088 5.47779 5.52784 5.64059 5.75797 5.81965 5.94470 6.02493 6.11774 6.18688 6.24602 6.28860 6.40403 6.49661 6.65748 6.72631 6.78145 6.85851 6.90058 7.13227 7.31079 7.43189 7.49267 7.75996 7.82612 7.89357 8.25677 8.41403 9.25667 9.89575 10.39434 11.33750 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020382 B = 0.002501 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.402362 B =11193.564286 C =11402.882374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.600 5.600 3 C -0.245 4.245 4 H 0.067 0.933 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.900 3.100 8 H -0.285 1.285 9 H -0.292 1.292 10 H -0.284 1.284 11 C 0.158 3.842 12 C -0.116 4.116 13 H 0.066 0.934 14 C -0.108 4.108 15 C -0.134 4.134 16 C 0.100 3.900 17 N -0.602 5.602 18 C 0.517 3.483 19 O -0.519 6.519 20 C 0.057 3.943 21 H 0.097 0.903 22 C -0.145 4.145 23 C -0.143 4.143 24 C 0.052 3.948 25 H 0.099 0.901 26 C 0.521 3.479 27 N -0.853 5.853 28 O -0.513 6.513 29 O -0.313 6.313 30 C 0.116 3.884 31 H 0.027 0.973 32 H 0.044 0.956 33 H -0.004 1.004 34 H 0.252 0.748 35 H 0.044 0.956 36 H 0.038 0.962 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.401 0.599 48 H 0.406 0.594 49 H 0.064 0.936 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.753 -12.863 17.308 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.322 5.322 3 C -0.374 4.374 4 H 0.084 0.916 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.731 3.269 8 H -0.212 1.212 9 H -0.218 1.218 10 H -0.210 1.210 11 C 0.030 3.970 12 C -0.138 4.138 13 H 0.084 0.916 14 C -0.145 4.145 15 C -0.172 4.172 16 C -0.023 4.023 17 N -0.337 5.337 18 C 0.303 3.697 19 O -0.394 6.394 20 C -0.004 4.004 21 H 0.114 0.886 22 C -0.183 4.183 23 C -0.181 4.181 24 C -0.010 4.010 25 H 0.116 0.884 26 C 0.304 3.696 27 N -0.420 5.420 28 O -0.386 6.386 29 O -0.230 6.230 30 C -0.006 4.006 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.014 0.986 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.119 0.881 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.103 0.897 46 H 0.110 0.890 47 H 0.229 0.771 48 H 0.237 0.763 49 H 0.083 0.917 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.835 -13.644 16.148 22.913 hybrid contribution 0.545 1.223 0.739 1.529 sum 9.380 -12.421 16.887 22.966 Atomic orbital electron populations 1.20786 0.82575 0.95529 0.99176 1.43932 1.01850 1.00617 1.85819 1.19090 0.97667 0.85299 1.35378 0.91559 1.24992 0.97742 0.98257 0.98818 1.70064 1.17777 1.26954 1.40511 0.86402 0.78435 0.84166 0.77916 1.21201 1.21762 1.21033 1.20793 0.95804 0.88294 0.92157 1.22294 0.98461 0.91866 1.01158 0.91578 1.21521 0.98866 1.01914 0.92208 1.21947 1.00679 0.94715 0.99837 1.21987 0.94343 0.90426 0.95538 1.48058 1.52613 1.18151 1.14890 1.20005 0.80439 0.81616 0.87651 1.90744 1.37464 1.49002 1.62219 1.22921 0.98935 0.84749 0.93819 0.88552 1.23062 1.02744 0.98015 0.94483 1.22939 1.03457 0.92505 0.99166 1.22896 0.98660 0.94858 0.84539 0.88376 1.20177 0.83209 0.83496 0.82694 1.43715 1.47077 1.44322 1.06884 1.90833 1.45364 1.47132 1.55234 1.89423 1.84696 1.31923 1.16964 1.21921 1.00087 0.98137 0.80478 0.95509 0.93744 0.98576 0.93813 0.93754 0.94367 0.88070 0.93197 0.91859 0.91279 0.90351 0.91340 0.89267 0.88566 0.89729 0.88977 0.77064 0.76281 0.91746 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 9.01 59.85 0.54 4.60 16 2 N -0.60 -14.59 2.80 -181.12 -0.51 -15.10 16 3 C -0.24 -6.35 7.59 -15.06 -0.11 -6.47 16 4 H 0.07 1.69 7.84 -52.49 -0.41 1.28 16 5 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 6 N -0.91 -25.64 10.58 55.49 0.59 -25.06 16 7 Si 0.90 21.20 29.57 -169.99 -5.03 16.17 16 8 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 C 0.16 3.15 5.22 -4.04 -0.02 3.13 16 12 C -0.12 -2.07 2.56 -90.27 -0.23 -2.30 16 13 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 14 C -0.11 -1.85 4.76 -26.69 -0.13 -1.97 16 15 C -0.13 -1.76 6.08 -26.61 -0.16 -1.92 16 16 C 0.10 1.08 5.98 -3.71 -0.02 1.06 16 17 N -0.60 -8.48 2.97 -172.51 -0.51 -8.99 16 18 C 0.52 8.08 7.02 -10.98 -0.08 8.01 16 19 O -0.52 -10.67 15.97 -13.61 -0.22 -10.88 16 20 C 0.06 0.66 2.77 -27.10 -0.08 0.58 16 21 H 0.10 0.81 7.84 -51.93 -0.41 0.40 16 22 C -0.15 -1.26 5.53 -25.16 -0.14 -1.40 16 23 C -0.14 -0.96 6.62 -25.16 -0.17 -1.12 16 24 C 0.05 0.47 3.70 -27.10 -0.10 0.37 16 25 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 26 C 0.52 5.46 7.34 -10.99 -0.08 5.38 16 27 N -0.85 -4.29 8.87 31.22 0.28 -4.01 16 28 O -0.51 -8.48 17.40 -13.58 -0.24 -8.72 16 29 O -0.31 -4.49 10.19 -64.17 -0.65 -5.14 16 30 C 0.12 1.82 5.75 -3.49 -0.02 1.80 16 31 H 0.03 0.71 7.42 -51.92 -0.39 0.33 16 32 H 0.04 1.18 7.18 -51.93 -0.37 0.80 16 33 H 0.00 -0.10 7.84 -51.93 -0.41 -0.50 16 34 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.04 0.85 8.03 -51.93 -0.42 0.44 16 36 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 37 H 0.10 2.21 6.26 -51.93 -0.33 1.88 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.62 3.98 -51.93 -0.21 0.41 16 42 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 43 H 0.09 0.98 7.87 -51.93 -0.41 0.57 16 44 H 0.10 0.56 6.55 -51.93 -0.34 0.22 16 45 H 0.08 0.65 7.87 -51.93 -0.41 0.24 16 46 H 0.09 0.27 8.14 -51.92 -0.42 -0.15 16 47 H 0.40 0.55 8.83 -40.82 -0.36 0.19 16 48 H 0.41 1.75 8.93 -40.82 -0.36 1.38 16 49 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.09 1.50 7.00 -51.93 -0.36 1.14 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -37.23 389.47 -9.41 -46.64 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -8.10 Total: -0.41 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -0.89 Total: 9.64 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.15 Total: -53.16 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -1.11 Total: -24.75 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.23 -9.41 -46.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752517228.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.354 kcal (2) G-P(sol) polarization free energy of solvation -37.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds