Wall clock time and date at job start Sat Apr 11 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99999 * 2 1 4 4 H 1.08001 * 119.99948 * 202.13946 * 3 2 1 5 5 C 1.38808 * 119.99834 * 22.15377 * 3 2 1 6 6 N 1.31618 * 120.00097 * 11.54928 * 5 3 2 7 7 Si 1.86798 * 119.99798 * 191.55472 * 5 3 2 8 8 H 1.48499 * 109.47557 * 59.99357 * 7 5 3 9 9 H 1.48503 * 109.47417 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47203 * 299.99515 * 7 5 3 11 11 C 1.46498 * 119.99824 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47434 * 269.99787 * 11 2 1 13 13 H 1.08996 * 109.49988 * 55.06300 * 12 11 2 14 14 C 1.53043 * 109.49669 * 295.00119 * 12 11 2 15 15 C 1.53038 * 109.54116 * 178.68147 * 14 12 11 16 16 C 1.53194 * 109.31175 * 61.36240 * 15 14 12 17 17 N 1.46920 * 108.77749 * 305.37065 * 16 15 14 18 18 C 1.34774 * 120.63062 * 233.58557 * 17 16 15 19 19 O 1.21282 * 120.00586 * 179.97438 * 18 17 16 20 20 C 1.50706 * 120.00025 * 359.97438 * 18 17 16 21 21 H 1.09002 * 110.32857 * 302.74941 * 20 18 17 22 22 C 1.54479 * 110.37094 * 65.00068 * 20 18 17 23 23 C 1.54506 * 104.05931 * 142.92218 * 22 20 18 24 24 C 1.54481 * 104.06554 * 359.97438 * 23 22 20 25 25 H 1.08997 * 110.37154 * 94.85392 * 24 23 22 26 26 C 1.50704 * 110.37131 * 217.07499 * 24 23 22 27 27 N 1.34767 * 120.00391 * 293.45324 * 26 24 23 28 28 O 1.21285 * 119.99512 * 113.44629 * 26 24 23 29 29 O 1.44420 * 110.46721 * 180.43870 * 20 18 17 30 30 C 1.46925 * 118.74171 * 53.85627 * 17 16 15 31 31 H 1.09007 * 109.46765 * 274.22393 * 1 2 3 32 32 H 1.09001 * 109.47155 * 34.21941 * 1 2 3 33 33 H 1.08995 * 109.47407 * 154.22521 * 1 2 3 34 34 H 0.97005 * 119.99862 * 180.02562 * 6 5 3 35 35 H 1.09002 * 109.47231 * 149.99607 * 11 2 1 36 36 H 1.08997 * 109.47564 * 29.99897 * 11 2 1 37 37 H 1.09001 * 109.45792 * 58.65684 * 14 12 11 38 38 H 1.09003 * 109.45887 * 298.70278 * 14 12 11 39 39 H 1.08999 * 109.49681 * 301.41705 * 15 14 12 40 40 H 1.08996 * 109.49775 * 181.31926 * 15 14 12 41 41 H 1.08994 * 109.58967 * 185.57951 * 16 15 14 42 42 H 1.09007 * 109.69986 * 65.22669 * 16 15 14 43 43 H 1.09000 * 110.51430 * 24.27920 * 22 20 18 44 44 H 1.08997 * 110.51006 * 261.56451 * 22 20 18 45 45 H 1.09001 * 110.50942 * 241.35022 * 23 22 20 46 46 H 1.09008 * 110.62436 * 118.70257 * 23 22 20 47 47 H 0.97004 * 119.99875 * 359.97438 * 27 26 24 48 48 H 0.97001 * 120.00360 * 179.97438 * 27 26 24 49 49 H 1.09000 * 109.58725 * 65.93046 * 30 17 16 50 50 H 1.09000 * 109.58819 * 186.35196 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1700 1.2204 -0.3525 5 6 1.5324 2.3436 0.4533 6 7 0.3829 2.2705 1.0902 7 14 2.3333 4.0055 0.1594 8 1 2.4879 4.2293 -1.3005 9 1 1.4799 5.0752 0.7361 10 1 3.6687 4.0332 0.8084 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7111 1.4417 13 1 1.5064 -1.7571 1.9809 14 6 3.3826 -0.7073 2.1269 15 6 3.6121 -1.1311 3.5794 16 6 4.2833 -2.5079 3.6055 17 7 3.4665 -3.4470 2.8247 18 6 3.0519 -4.6100 3.3650 19 8 2.3777 -5.3767 2.7104 20 6 3.4261 -4.9579 4.7829 21 1 4.5098 -4.9541 4.9003 22 6 2.7746 -3.9643 5.7702 23 6 2.3948 -4.8383 6.9864 24 6 2.8611 -6.2566 6.5897 25 1 3.8582 -6.4524 6.9841 26 6 1.8865 -7.2895 7.0941 27 7 1.7415 -7.4889 8.4190 28 8 1.2326 -7.9412 6.3076 29 8 2.8856 -6.2469 5.1460 30 6 3.1153 -3.0970 1.4416 31 1 -0.3633 0.0757 1.0250 32 1 -0.3633 0.8498 -0.5779 33 1 -0.3634 -0.9254 -0.4468 34 1 -0.0486 3.0796 1.4066 35 1 3.1498 -1.1382 -0.5144 36 1 1.6084 -2.0282 -0.5147 37 1 2.9275 0.2829 2.1051 38 1 4.3373 -0.6796 1.6015 39 1 2.6552 -1.1830 4.0988 40 1 4.2557 -0.4032 4.0734 41 1 4.3591 -2.8581 4.6348 42 1 5.2795 -2.4394 3.1685 43 1 1.8844 -3.5159 5.3292 44 1 3.4874 -3.1930 6.0618 45 1 1.3168 -4.8219 7.1466 46 1 2.9181 -4.4999 7.8807 47 1 2.2648 -6.9679 9.0481 48 1 1.1139 -8.1535 8.7437 49 1 4.0174 -3.0737 0.8303 50 1 2.4203 -3.8360 1.0429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752517228.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:41 Heat of formation + Delta-G solvation = -117.326898 kcal Electronic energy + Delta-G solvation = -30998.262177 eV Core-core repulsion = 26832.097810 eV Total energy + Delta-G solvation = -4166.164367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.89175 -40.80700 -39.39460 -38.58568 -37.20313 -34.88851 -34.52634 -33.16607 -32.96594 -32.11473 -30.83758 -28.00525 -27.37944 -26.81102 -25.15023 -23.72247 -23.04409 -22.66818 -21.61854 -21.09715 -20.06958 -18.93836 -18.62175 -18.28210 -17.78515 -17.46530 -17.08548 -16.72769 -16.24955 -15.99692 -15.75290 -15.62483 -15.40205 -15.32401 -14.93735 -14.85817 -14.75434 -14.62617 -14.16537 -13.91707 -13.82183 -13.26111 -13.13682 -13.00406 -12.79810 -12.73468 -12.59197 -12.53316 -12.28350 -12.05367 -11.95362 -11.90751 -11.84700 -11.67542 -11.46960 -11.30425 -11.12739 -10.88599 -10.73076 -10.62045 -10.52874 -9.64017 -8.73846 -7.75676 -5.22426 1.47482 1.48848 1.50756 1.52487 1.57518 1.66567 2.28965 2.55419 3.01218 3.26648 3.38031 3.57278 3.67687 3.74870 3.85622 3.91430 4.00090 4.02531 4.06723 4.16472 4.28497 4.34138 4.44301 4.45774 4.57315 4.60876 4.74007 4.79489 4.83021 4.86233 4.90948 4.94438 4.96570 4.99440 5.01712 5.25358 5.30405 5.35882 5.46711 5.59108 5.64955 5.69174 5.72345 5.79751 5.86558 6.37468 6.38971 6.43617 7.10763 7.19901 7.30697 7.91308 8.38009 9.28304 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020382 B = 0.002501 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.402362 B =11193.564286 C =11402.882374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.614 5.614 3 C -0.239 4.239 4 H 0.074 0.926 5 C -0.055 4.055 6 N -0.941 5.941 7 Si 0.963 3.037 8 H -0.284 1.284 9 H -0.300 1.300 10 H -0.270 1.270 11 C 0.153 3.847 12 C -0.101 4.101 13 H 0.028 0.972 14 C -0.103 4.103 15 C -0.127 4.127 16 C 0.101 3.899 17 N -0.600 5.600 18 C 0.506 3.494 19 O -0.584 6.584 20 C 0.059 3.941 21 H 0.142 0.858 22 C -0.144 4.144 23 C -0.133 4.133 24 C 0.047 3.953 25 H 0.146 0.854 26 C 0.514 3.486 27 N -0.824 5.824 28 O -0.590 6.590 29 O -0.367 6.367 30 C 0.124 3.876 31 H -0.001 1.001 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.244 0.756 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.054 0.946 44 H 0.138 0.862 45 H 0.066 0.934 46 H 0.147 0.853 47 H 0.423 0.577 48 H 0.411 0.589 49 H 0.087 0.913 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.723 -12.548 20.090 27.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.337 5.337 3 C -0.369 4.369 4 H 0.091 0.909 5 C -0.249 4.249 6 N -0.589 5.589 7 Si 0.792 3.208 8 H -0.210 1.210 9 H -0.227 1.227 10 H -0.196 1.196 11 C 0.027 3.973 12 C -0.123 4.123 13 H 0.047 0.953 14 C -0.141 4.141 15 C -0.165 4.165 16 C -0.020 4.020 17 N -0.333 5.333 18 C 0.295 3.705 19 O -0.464 6.464 20 C -0.001 4.001 21 H 0.159 0.841 22 C -0.181 4.181 23 C -0.170 4.170 24 C -0.013 4.013 25 H 0.163 0.837 26 C 0.298 3.702 27 N -0.390 5.390 28 O -0.470 6.470 29 O -0.285 6.285 30 C 0.001 3.999 31 H 0.017 0.983 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.114 0.886 41 H 0.137 0.863 42 H 0.113 0.887 43 H 0.073 0.927 44 H 0.156 0.844 45 H 0.085 0.915 46 H 0.165 0.835 47 H 0.256 0.744 48 H 0.243 0.757 49 H 0.105 0.895 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.880 -13.306 19.015 26.543 hybrid contribution -0.705 1.069 -0.114 1.285 sum 12.175 -12.237 18.901 25.598 Atomic orbital electron populations 1.20493 0.83389 0.95481 0.97225 1.44137 1.01727 1.01865 1.85936 1.19355 0.97739 0.85892 1.33958 0.90862 1.25703 0.98461 1.01469 0.99270 1.70249 1.19352 1.27079 1.42198 0.85406 0.77865 0.79975 0.77600 1.21021 1.22699 1.19572 1.20955 0.95958 0.86674 0.93748 1.21990 0.97390 0.93818 0.99111 0.95318 1.21382 0.98427 0.98867 0.95384 1.21883 1.00913 0.97040 0.96703 1.22264 0.94204 0.87891 0.97618 1.48145 1.52362 1.18465 1.14325 1.20986 0.79161 0.81081 0.89322 1.90710 1.40373 1.51147 1.64162 1.23130 1.01269 0.84740 0.90970 0.84079 1.23129 1.02237 0.98471 0.94291 1.23004 1.03170 0.90599 1.00260 1.23300 1.00411 0.95403 0.82221 0.83719 1.20730 0.82727 0.83153 0.83584 1.43497 1.46317 1.43667 1.05525 1.90803 1.48509 1.50225 1.57434 1.89389 1.85460 1.33313 1.20349 1.21650 1.00282 0.95587 0.82395 0.98278 0.96132 0.96340 0.94653 0.92378 0.93909 0.92954 0.91845 0.93452 0.88627 0.86333 0.88732 0.92682 0.84403 0.91480 0.83547 0.74407 0.75711 0.89470 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.27 9.01 127.77 1.15 10.42 16 2 N -0.61 -30.57 2.80 -726.95 -2.04 -32.61 16 3 C -0.24 -12.55 7.59 84.03 0.64 -11.91 16 4 H 0.07 3.68 7.84 -2.91 -0.02 3.66 16 5 C -0.05 -2.98 5.13 84.86 0.43 -2.55 16 6 N -0.94 -55.13 10.58 21.65 0.23 -54.90 16 7 Si 0.96 43.91 29.57 68.60 2.03 45.94 16 8 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 9 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 C 0.15 6.18 5.22 86.38 0.45 6.63 16 12 C -0.10 -3.68 2.56 -10.57 -0.03 -3.70 16 13 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 14 C -0.10 -3.45 4.76 30.62 0.15 -3.30 16 15 C -0.13 -3.02 6.08 30.67 0.19 -2.84 16 16 C 0.10 1.76 5.98 86.36 0.52 2.27 16 17 N -0.60 -15.96 2.97 -818.07 -2.43 -18.39 16 18 C 0.51 15.61 7.02 87.66 0.62 16.22 16 19 O -0.58 -25.20 15.97 15.28 0.24 -24.96 16 20 C 0.06 1.21 2.77 30.35 0.08 1.29 16 21 H 0.14 1.57 7.84 -2.39 -0.02 1.56 16 22 C -0.14 -1.99 5.53 31.61 0.17 -1.82 16 23 C -0.13 -1.26 6.62 31.61 0.21 -1.05 16 24 C 0.05 0.71 3.70 30.35 0.11 0.82 16 25 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 26 C 0.51 10.26 7.34 87.66 0.64 10.90 16 27 N -0.82 -6.34 8.87 -173.54 -1.54 -7.88 16 28 O -0.59 -20.47 17.40 15.25 0.27 -20.20 16 29 O -0.37 -10.21 10.19 -121.31 -1.24 -11.45 16 30 C 0.12 3.86 5.75 86.51 0.50 4.36 16 31 H 0.00 -0.06 7.42 -2.38 -0.02 -0.08 16 32 H 0.02 1.12 7.18 -2.39 -0.02 1.10 16 33 H 0.02 0.84 7.84 -2.39 -0.02 0.82 16 34 H 0.24 14.08 8.31 -92.70 -0.77 13.31 16 35 H 0.06 2.18 8.03 -2.39 -0.02 2.16 16 36 H 0.04 1.66 7.86 -2.39 -0.02 1.64 16 37 H 0.05 2.30 6.26 -2.39 -0.01 2.28 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.12 1.14 3.98 -2.39 -0.01 1.13 16 42 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.05 1.16 7.87 -2.39 -0.02 1.14 16 44 H 0.14 0.72 6.55 -2.39 -0.02 0.70 16 45 H 0.07 0.89 7.87 -2.39 -0.02 0.88 16 46 H 0.15 -0.17 8.14 -2.38 -0.02 -0.19 16 47 H 0.42 -0.57 8.83 -92.71 -0.82 -1.39 16 48 H 0.41 2.86 8.93 -92.71 -0.83 2.03 16 49 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 50 H 0.06 2.27 7.00 -2.39 -0.02 2.26 16 Total: -1.00 -92.08 389.47 0.68 -91.40 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -0.68 Total: 7.29 kcal Atomic # 6 Polarization: 19.93 SS G_CDS: 5.83 Total: 25.76 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -5.77 Total: -113.78 kcal Atomic # 8 Polarization: -55.89 SS G_CDS: -0.73 Total: -56.61 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -92.08 0.68 -91.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752517228.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.928 kcal (2) G-P(sol) polarization free energy of solvation -92.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds