Wall clock time and date at job start Sat Apr 11 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50697 * 119.99780 * 2 1 4 4 O 1.42898 * 109.47166 * 134.99822 * 3 2 1 5 5 C 1.42897 * 114.00165 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47544 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99741 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00174 * 180.02562 * 6 5 4 9 9 C 1.46923 * 120.63177 * 359.97438 * 8 6 5 10 10 C 1.53197 * 108.77109 * 126.37424 * 9 8 6 11 11 C 1.53042 * 109.31546 * 54.63823 * 10 9 8 12 12 C 1.53046 * 109.53542 * 298.63414 * 11 10 9 13 13 H 1.08997 * 109.49339 * 301.37800 * 12 11 10 14 14 N 1.46892 * 109.49322 * 181.31681 * 12 11 10 15 15 C 1.46902 * 111.00344 * 56.04527 * 14 12 11 16 16 C 1.46902 * 110.99809 * 179.97438 * 14 12 11 17 17 C 1.50703 * 109.47332 * 169.99822 * 16 14 12 18 18 O 1.21288 * 119.99735 * 0.02562 * 17 16 14 19 19 N 1.34777 * 119.99823 * 180.02562 * 17 16 14 20 20 C 1.37099 * 119.99952 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99824 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00239 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99846 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00119 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47261 * 239.99930 * 24 22 20 27 27 H 1.48500 * 109.47454 * 119.99923 * 24 22 20 28 28 C 1.46932 * 120.62900 * 179.97438 * 8 6 5 29 29 H 1.07995 * 119.99876 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99984 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.99876 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47630 * 14.99394 * 3 2 1 33 33 H 1.09005 * 109.47154 * 254.99570 * 3 2 1 34 34 H 1.09002 * 109.47129 * 59.99853 * 5 4 3 35 35 H 1.09005 * 109.47766 * 300.00265 * 5 4 3 36 36 H 1.08995 * 109.58843 * 6.59035 * 9 8 6 37 37 H 1.08995 * 109.70340 * 246.22882 * 9 8 6 38 38 H 1.08998 * 109.49653 * 294.68449 * 10 9 8 39 39 H 1.09001 * 109.49350 * 174.58917 * 10 9 8 40 40 H 1.08997 * 109.45921 * 178.61319 * 11 10 9 41 41 H 1.08995 * 109.46003 * 58.65194 * 11 10 9 42 42 H 1.09001 * 109.46814 * 183.95345 * 15 14 12 43 43 H 1.08990 * 109.47202 * 303.95229 * 15 14 12 44 44 H 1.09004 * 109.46902 * 63.95325 * 15 14 12 45 45 H 1.09005 * 109.47415 * 49.99792 * 16 14 12 46 46 H 1.09003 * 109.47295 * 290.00134 * 16 14 12 47 47 H 0.96996 * 120.00501 * 359.97438 * 19 17 16 48 48 H 0.96993 * 120.00098 * 359.97438 * 23 22 20 49 49 H 1.08995 * 109.58445 * 113.83923 * 28 8 6 50 50 H 1.08999 * 109.58481 * 353.41731 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9084 2.4349 1.0321 6 6 4.9946 2.2566 2.0613 7 8 5.0903 1.2101 2.6668 8 7 5.8598 3.2599 2.3088 9 6 5.7569 4.5332 1.5829 10 6 5.6846 5.6762 2.6004 11 6 6.8837 5.5876 3.5473 12 6 6.8381 4.2603 4.3079 13 1 5.9042 4.1926 4.8658 14 7 7.9719 4.1899 5.2393 15 6 7.9769 5.3420 6.1507 16 6 7.9598 2.9264 5.9887 17 6 9.2545 2.7790 6.7457 18 8 10.1035 3.6418 6.6689 19 7 9.4690 1.6884 7.5080 20 6 10.6466 1.5545 8.1972 21 1 11.4026 2.3228 8.1288 22 6 10.8674 0.4305 8.9835 23 7 9.9473 -0.5041 9.0671 24 14 12.4717 0.2484 9.9230 25 1 13.3343 1.4289 9.6631 26 1 13.1706 -0.9830 9.4752 27 1 12.1858 0.1542 11.3772 28 6 6.9237 3.1012 3.3096 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3856 2.1161 0.2659 33 1 2.4756 1.4868 -0.9927 34 1 3.2688 3.2696 1.3192 35 1 4.3587 2.6397 0.0608 36 1 4.8559 4.5325 0.9696 37 1 6.6320 4.6652 0.9467 38 1 4.7613 5.5948 3.1739 39 1 5.7049 6.6316 2.0762 40 1 6.8478 6.4142 4.2569 41 1 7.8068 5.6441 2.9706 42 1 8.8644 5.3017 6.7822 43 1 7.9856 6.2644 5.5702 44 1 7.0844 5.3145 6.7759 45 1 7.8479 2.0934 5.2947 46 1 7.1264 2.9286 6.6912 47 1 8.7899 0.9986 7.5697 48 1 9.1139 -0.4090 8.5801 49 1 7.8952 3.1152 2.8155 50 1 6.7925 2.1555 3.8354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752988443.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:56 Heat of formation + Delta-G solvation = -73.417610 kcal Electronic energy + Delta-G solvation = -29785.971215 eV Core-core repulsion = 25621.710897 eV Total energy + Delta-G solvation = -4164.260318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.61152 -39.05336 -38.26276 -37.52666 -35.85878 -34.25814 -34.15465 -32.67153 -31.05712 -30.80432 -28.75101 -27.98903 -26.08578 -25.58704 -24.32230 -23.87641 -22.30526 -20.66682 -20.29036 -19.48015 -19.28585 -17.88637 -17.82539 -16.93487 -16.78761 -16.48761 -16.03581 -15.62012 -15.36357 -14.94212 -14.86597 -14.61749 -14.49263 -14.19498 -13.89058 -13.69773 -13.56985 -13.43973 -13.29348 -13.08070 -12.72721 -12.51962 -12.47898 -12.15437 -11.68996 -11.62397 -11.42579 -11.33250 -11.18569 -11.12276 -10.99322 -10.81576 -10.43330 -10.41749 -10.19446 -9.94084 -9.81649 -9.75094 -9.46598 -8.89075 -8.48293 -8.00097 -7.90081 -6.69946 -3.83098 1.69265 2.36135 2.44898 3.35150 3.37588 3.47855 3.56893 3.87498 3.91717 4.15837 4.33033 4.47797 4.53185 4.56243 4.63169 4.64146 4.70139 4.74068 4.80374 4.89201 5.01566 5.03751 5.05145 5.17842 5.26339 5.29446 5.43495 5.44455 5.53592 5.58484 5.68661 5.71506 5.77561 5.85443 5.90346 5.96495 6.07821 6.14046 6.14741 6.15698 6.22080 6.51529 6.64072 7.10886 7.17792 7.32012 7.86745 7.95104 8.13715 8.66137 8.85976 9.53536 9.94091 10.73629 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012500 B = 0.002288 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.426936 B =12237.039266 C =14142.180622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.150 4.150 3 C 0.087 3.913 4 O -0.359 6.359 5 C 0.047 3.953 6 C 0.514 3.486 7 O -0.513 6.513 8 N -0.610 5.610 9 C 0.104 3.896 10 C -0.133 4.133 11 C -0.116 4.116 12 C 0.072 3.928 13 H 0.041 0.959 14 N -0.510 5.510 15 C 0.020 3.980 16 C 0.040 3.960 17 C 0.448 3.552 18 O -0.572 6.572 19 N -0.576 5.576 20 C -0.381 4.381 21 H 0.100 0.900 22 C -0.011 4.011 23 N -0.902 5.902 24 Si 1.096 2.904 25 H -0.284 1.284 26 H -0.284 1.284 27 H -0.285 1.285 28 C 0.117 3.883 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.065 0.935 44 H 0.014 0.986 45 H 0.090 0.910 46 H 0.047 0.953 47 H 0.375 0.625 48 H 0.262 0.738 49 H 0.082 0.918 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.073 10.697 -20.328 29.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.169 4.169 3 C 0.011 3.989 4 O -0.277 6.277 5 C -0.033 4.033 6 C 0.301 3.699 7 O -0.387 6.387 8 N -0.347 5.347 9 C -0.019 4.019 10 C -0.172 4.172 11 C -0.154 4.154 12 C -0.038 4.038 13 H 0.059 0.941 14 N -0.235 5.235 15 C -0.127 4.127 16 C -0.092 4.092 17 C 0.234 3.766 18 O -0.455 6.455 19 N -0.214 5.214 20 C -0.510 4.510 21 H 0.118 0.882 22 C -0.213 4.213 23 N -0.541 5.541 24 Si 0.923 3.077 25 H -0.209 1.209 26 H -0.210 1.210 27 H -0.211 1.211 28 C -0.005 4.005 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.137 0.863 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.083 0.917 44 H 0.032 0.968 45 H 0.108 0.892 46 H 0.065 0.935 47 H 0.208 0.792 48 H 0.074 0.926 49 H 0.101 0.899 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.116 9.542 -19.167 26.799 hybrid contribution -2.199 0.863 -0.759 2.481 sum -18.315 10.405 -19.926 28.996 Atomic orbital electron populations 1.23848 0.95480 1.02363 0.99918 1.22721 0.95635 0.98203 1.00294 1.21622 0.88699 0.96321 0.92289 1.88068 1.44295 1.34876 1.60477 1.22231 0.93164 0.89232 0.98649 1.20196 0.82169 0.83770 0.83814 1.90769 1.71751 1.26565 1.49653 1.48016 1.31735 1.14304 1.40603 1.21820 1.02624 0.83029 0.94386 1.21933 0.99376 0.98182 0.97726 1.21659 0.98526 0.96789 0.98380 1.21944 0.92694 0.95458 0.93691 0.94120 1.61586 1.40724 1.02094 1.19048 1.22601 1.02001 0.92402 0.95705 1.21976 0.97135 0.93003 0.97058 1.19598 0.88926 0.84196 0.83873 1.90475 1.46518 1.41893 1.66656 1.41956 1.17962 1.19113 1.42403 1.20592 0.95373 1.08861 1.26206 0.88224 1.26509 1.05483 0.91696 0.97661 1.70825 1.07339 1.34307 1.41668 0.83047 0.72896 0.76027 0.75745 1.20940 1.21024 1.21082 1.21718 0.89882 0.99500 0.89423 0.88432 0.87624 0.86300 0.92567 0.92059 0.90259 0.90186 0.90062 0.90583 0.91507 0.90141 0.90948 0.90443 0.88409 0.91675 0.96775 0.89171 0.93487 0.79157 0.92617 0.89948 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 14.31 29.01 0.42 -0.69 16 2 C -0.15 -1.17 9.89 -36.03 -0.36 -1.53 16 3 C 0.09 0.65 6.35 36.00 0.23 0.88 16 4 O -0.36 -4.07 9.86 -55.14 -0.54 -4.62 16 5 C 0.05 0.41 4.76 36.01 0.17 0.58 16 6 C 0.51 6.53 7.78 -10.99 -0.09 6.44 16 7 O -0.51 -9.16 15.91 -14.36 -0.23 -9.39 16 8 N -0.61 -6.60 2.97 -172.76 -0.51 -7.11 16 9 C 0.10 0.69 6.34 -3.71 -0.02 0.67 16 10 C -0.13 -0.90 6.08 -26.61 -0.16 -1.06 16 11 C -0.12 -1.14 4.86 -26.69 -0.13 -1.27 16 12 C 0.07 0.93 2.09 -67.58 -0.14 0.79 16 13 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 14 N -0.51 -8.48 4.37 -236.17 -1.03 -9.51 16 15 C 0.02 0.33 8.84 60.07 0.53 0.86 16 16 C 0.04 0.74 5.26 -4.97 -0.03 0.72 16 17 C 0.45 10.85 7.51 -10.98 -0.08 10.77 16 18 O -0.57 -15.58 13.88 5.55 0.08 -15.50 16 19 N -0.58 -14.98 5.28 -10.96 -0.06 -15.03 16 20 C -0.38 -10.93 9.68 -14.93 -0.14 -11.08 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 22 C -0.01 -0.31 5.50 -17.47 -0.10 -0.41 16 23 N -0.90 -26.04 13.68 55.50 0.76 -25.28 16 24 Si 1.10 24.95 29.92 -169.99 -5.09 19.86 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.12 1.55 5.34 -3.70 -0.02 1.53 16 29 H 0.10 0.48 7.90 -52.49 -0.41 0.07 16 30 H 0.11 0.55 8.06 -52.49 -0.42 0.12 16 31 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.06 0.32 7.86 -51.93 -0.41 -0.08 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.47 7.69 -51.93 -0.40 0.07 16 35 H 0.08 0.47 7.94 -51.93 -0.41 0.05 16 36 H 0.08 0.32 5.93 -51.93 -0.31 0.01 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.70 6.19 -51.93 -0.32 0.38 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.10 1.93 5.88 -51.93 -0.31 1.62 16 43 H 0.06 0.87 5.98 -51.93 -0.31 0.56 16 44 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.09 1.60 5.96 -51.93 -0.31 1.30 16 46 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 47 H 0.38 9.18 6.73 -40.82 -0.27 8.90 16 48 H 0.26 7.34 6.77 -40.82 -0.28 7.07 16 49 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.10 1.50 5.38 -51.93 -0.28 1.22 16 LS Contribution 398.55 15.07 6.01 6.01 Total: -1.00 -36.80 398.55 -8.38 -45.18 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -7.84 Total: 8.20 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 0.08 Total: 7.20 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.84 Total: -56.94 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.69 Total: -29.51 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.09 Total: 19.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.80 -8.38 -45.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752988443.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.240 kcal (2) G-P(sol) polarization free energy of solvation -36.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds