Wall clock time and date at job start Sat Apr 11 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50697 * 119.99780 * 2 1 4 4 O 1.42898 * 109.47166 * 134.99822 * 3 2 1 5 5 C 1.42897 * 114.00165 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47544 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99741 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00174 * 180.02562 * 6 5 4 9 9 C 1.46923 * 120.63177 * 359.97438 * 8 6 5 10 10 C 1.53197 * 108.77109 * 126.37424 * 9 8 6 11 11 C 1.53042 * 109.31546 * 54.63823 * 10 9 8 12 12 C 1.53046 * 109.53542 * 298.63414 * 11 10 9 13 13 H 1.08997 * 109.49339 * 301.37800 * 12 11 10 14 14 N 1.46892 * 109.49322 * 181.31681 * 12 11 10 15 15 C 1.46902 * 111.00344 * 56.04527 * 14 12 11 16 16 C 1.46902 * 110.99809 * 179.97438 * 14 12 11 17 17 C 1.50703 * 109.47332 * 169.99822 * 16 14 12 18 18 O 1.21288 * 119.99735 * 0.02562 * 17 16 14 19 19 N 1.34777 * 119.99823 * 180.02562 * 17 16 14 20 20 C 1.37099 * 119.99952 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99824 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00239 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99846 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00119 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47261 * 239.99930 * 24 22 20 27 27 H 1.48500 * 109.47454 * 119.99923 * 24 22 20 28 28 C 1.46932 * 120.62900 * 179.97438 * 8 6 5 29 29 H 1.07995 * 119.99876 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99984 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.99876 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47630 * 14.99394 * 3 2 1 33 33 H 1.09005 * 109.47154 * 254.99570 * 3 2 1 34 34 H 1.09002 * 109.47129 * 59.99853 * 5 4 3 35 35 H 1.09005 * 109.47766 * 300.00265 * 5 4 3 36 36 H 1.08995 * 109.58843 * 6.59035 * 9 8 6 37 37 H 1.08995 * 109.70340 * 246.22882 * 9 8 6 38 38 H 1.08998 * 109.49653 * 294.68449 * 10 9 8 39 39 H 1.09001 * 109.49350 * 174.58917 * 10 9 8 40 40 H 1.08997 * 109.45921 * 178.61319 * 11 10 9 41 41 H 1.08995 * 109.46003 * 58.65194 * 11 10 9 42 42 H 1.09001 * 109.46814 * 183.95345 * 15 14 12 43 43 H 1.08990 * 109.47202 * 303.95229 * 15 14 12 44 44 H 1.09004 * 109.46902 * 63.95325 * 15 14 12 45 45 H 1.09005 * 109.47415 * 49.99792 * 16 14 12 46 46 H 1.09003 * 109.47295 * 290.00134 * 16 14 12 47 47 H 0.96996 * 120.00501 * 359.97438 * 19 17 16 48 48 H 0.96993 * 120.00098 * 359.97438 * 23 22 20 49 49 H 1.08995 * 109.58445 * 113.83923 * 28 8 6 50 50 H 1.08999 * 109.58481 * 353.41731 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9084 2.4349 1.0321 6 6 4.9946 2.2566 2.0613 7 8 5.0903 1.2101 2.6668 8 7 5.8598 3.2599 2.3088 9 6 5.7569 4.5332 1.5829 10 6 5.6846 5.6762 2.6004 11 6 6.8837 5.5876 3.5473 12 6 6.8381 4.2603 4.3079 13 1 5.9042 4.1926 4.8658 14 7 7.9719 4.1899 5.2393 15 6 7.9769 5.3420 6.1507 16 6 7.9598 2.9264 5.9887 17 6 9.2545 2.7790 6.7457 18 8 10.1035 3.6418 6.6689 19 7 9.4690 1.6884 7.5080 20 6 10.6466 1.5545 8.1972 21 1 11.4026 2.3228 8.1288 22 6 10.8674 0.4305 8.9835 23 7 9.9473 -0.5041 9.0671 24 14 12.4717 0.2484 9.9230 25 1 13.3343 1.4289 9.6631 26 1 13.1706 -0.9830 9.4752 27 1 12.1858 0.1542 11.3772 28 6 6.9237 3.1012 3.3096 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3856 2.1161 0.2659 33 1 2.4756 1.4868 -0.9927 34 1 3.2688 3.2696 1.3192 35 1 4.3587 2.6397 0.0608 36 1 4.8559 4.5325 0.9696 37 1 6.6320 4.6652 0.9467 38 1 4.7613 5.5948 3.1739 39 1 5.7049 6.6316 2.0762 40 1 6.8478 6.4142 4.2569 41 1 7.8068 5.6441 2.9706 42 1 8.8644 5.3017 6.7822 43 1 7.9856 6.2644 5.5702 44 1 7.0844 5.3145 6.7759 45 1 7.8479 2.0934 5.2947 46 1 7.1264 2.9286 6.6912 47 1 8.7899 0.9986 7.5697 48 1 9.1139 -0.4090 8.5801 49 1 7.8952 3.1152 2.8155 50 1 6.7925 2.1555 3.8354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752988443.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:56 Heat of formation + Delta-G solvation = -100.683079 kcal Electronic energy + Delta-G solvation = -29787.153534 eV Core-core repulsion = 25621.710897 eV Total energy + Delta-G solvation = -4165.442637 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55229 -40.56690 -39.39396 -38.55652 -37.09948 -36.19739 -34.78967 -33.58188 -33.14362 -31.75624 -29.86635 -29.11134 -27.00305 -26.65448 -25.80559 -25.07489 -23.29084 -21.61086 -21.29774 -20.96311 -20.10734 -19.96050 -18.72243 -18.16205 -17.62352 -17.42698 -17.19759 -16.88146 -16.53178 -16.16443 -15.83916 -15.77618 -15.71698 -15.48190 -15.38004 -15.02544 -14.71952 -14.34744 -14.18465 -14.09660 -13.78627 -13.56327 -13.35306 -13.18243 -13.12640 -12.92622 -12.87033 -12.62700 -12.46355 -11.96520 -11.95099 -11.89071 -11.86770 -11.79535 -11.49454 -11.45913 -11.02103 -10.85335 -10.39072 -10.27064 -10.12379 -9.77903 -9.36343 -8.95200 -6.08977 1.16371 1.46135 1.50704 1.52053 1.66212 1.80421 1.97042 2.35871 2.62086 2.91416 3.13642 3.20989 3.43360 3.69796 3.80189 3.88531 4.01357 4.02823 4.05967 4.13452 4.16746 4.18430 4.21949 4.24497 4.26192 4.44236 4.46438 4.50311 4.54860 4.59597 4.63355 4.74832 4.77109 4.95375 4.97322 4.99138 5.03778 5.20224 5.30556 5.40558 5.57334 5.64525 5.69022 5.83840 5.93178 6.06158 6.08136 6.33797 6.54375 6.72248 7.05819 7.41336 7.88856 8.51991 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012500 B = 0.002288 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.426936 B =12237.039266 C =14142.180622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.180 4.180 3 C 0.085 3.915 4 O -0.402 6.402 5 C 0.051 3.949 6 C 0.503 3.497 7 O -0.581 6.581 8 N -0.604 5.604 9 C 0.096 3.904 10 C -0.125 4.125 11 C -0.113 4.113 12 C 0.078 3.922 13 H 0.037 0.963 14 N -0.525 5.525 15 C 0.026 3.974 16 C 0.053 3.947 17 C 0.449 3.551 18 O -0.602 6.602 19 N -0.590 5.590 20 C -0.407 4.407 21 H 0.077 0.923 22 C -0.046 4.046 23 N -0.919 5.919 24 Si 1.141 2.859 25 H -0.277 1.277 26 H -0.272 1.272 27 H -0.271 1.271 28 C 0.119 3.881 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.024 0.976 45 H 0.098 0.902 46 H 0.060 0.940 47 H 0.381 0.619 48 H 0.258 0.742 49 H 0.075 0.925 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.868 13.014 -22.404 32.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.199 4.199 3 C 0.010 3.990 4 O -0.321 6.321 5 C -0.027 4.027 6 C 0.293 3.707 7 O -0.460 6.460 8 N -0.339 5.339 9 C -0.025 4.025 10 C -0.163 4.163 11 C -0.151 4.151 12 C -0.031 4.031 13 H 0.055 0.945 14 N -0.249 5.249 15 C -0.122 4.122 16 C -0.078 4.078 17 C 0.237 3.763 18 O -0.487 6.487 19 N -0.229 5.229 20 C -0.536 4.536 21 H 0.095 0.905 22 C -0.244 4.244 23 N -0.558 5.558 24 Si 0.960 3.040 25 H -0.202 1.202 26 H -0.198 1.198 27 H -0.196 1.196 28 C -0.004 4.004 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.132 0.868 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.042 0.958 45 H 0.116 0.884 46 H 0.077 0.923 47 H 0.215 0.785 48 H 0.068 0.932 49 H 0.093 0.907 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.951 11.913 -21.292 30.290 hybrid contribution -1.702 0.212 -0.198 1.727 sum -19.653 12.124 -21.489 31.544 Atomic orbital electron populations 1.24060 0.94985 1.03532 0.97738 1.22815 0.96408 0.98231 1.02414 1.21801 0.88224 0.96491 0.92494 1.88022 1.45621 1.36590 1.61904 1.22386 0.92304 0.89387 0.98658 1.21141 0.82805 0.82931 0.83870 1.90736 1.73637 1.29311 1.52353 1.48122 1.30291 1.15672 1.39770 1.22238 1.05187 0.80582 0.94481 1.21930 0.97554 0.99731 0.97132 1.21688 1.00194 0.94438 0.98780 1.22009 0.90842 0.97397 0.92850 0.94484 1.61568 1.43140 1.01040 1.19182 1.22501 1.00408 0.93470 0.95779 1.21782 0.94024 0.94972 0.97043 1.20561 0.90231 0.82800 0.82746 1.90453 1.48201 1.42726 1.67358 1.42045 1.17683 1.20041 1.43113 1.20591 0.96186 1.09001 1.27797 0.90537 1.27937 1.07855 0.90842 0.97777 1.70907 1.07693 1.34889 1.42336 0.82533 0.69550 0.76632 0.75255 1.20182 1.19757 1.19617 1.21466 0.90631 0.98197 0.90135 0.86681 0.87030 0.88036 0.90462 0.90200 0.86733 0.86703 0.86271 0.89290 0.91366 0.86797 0.90437 0.90755 0.92472 0.88620 0.95774 0.88440 0.92260 0.78510 0.93159 0.90654 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 14.31 67.77 0.97 -0.82 16 2 C -0.18 -2.69 9.89 25.64 0.25 -2.43 16 3 C 0.09 1.09 6.35 71.23 0.45 1.54 16 4 O -0.40 -8.63 9.86 -129.94 -1.28 -9.91 16 5 C 0.05 0.74 4.76 71.24 0.34 1.08 16 6 C 0.50 12.38 7.78 87.66 0.68 13.06 16 7 O -0.58 -21.70 15.91 15.99 0.25 -21.44 16 8 N -0.60 -12.07 2.97 -818.87 -2.43 -14.50 16 9 C 0.10 0.87 6.34 86.36 0.55 1.41 16 10 C -0.13 -1.13 6.08 30.67 0.19 -0.94 16 11 C -0.11 -1.90 4.86 30.62 0.15 -1.75 16 12 C 0.08 1.95 2.09 45.00 0.09 2.04 16 13 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 14 N -0.52 -17.45 4.37 -901.10 -3.94 -21.39 16 15 C 0.03 0.82 8.84 127.69 1.13 1.95 16 16 C 0.05 2.05 5.26 85.56 0.45 2.50 16 17 C 0.45 22.59 7.51 87.66 0.66 23.24 16 18 O -0.60 -34.10 13.88 -3.05 -0.04 -34.15 16 19 N -0.59 -31.91 5.28 -306.98 -1.62 -33.53 16 20 C -0.41 -24.16 9.68 84.04 0.81 -23.34 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.05 -2.63 5.50 84.93 0.47 -2.16 16 23 N -0.92 -53.84 13.68 21.66 0.30 -53.55 16 24 Si 1.14 50.42 29.92 68.60 2.05 52.47 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 C 0.12 3.18 5.34 86.37 0.46 3.64 16 29 H 0.12 0.82 7.90 -2.91 -0.02 0.79 16 30 H 0.11 1.01 8.06 -2.91 -0.02 0.99 16 31 H 0.10 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.08 0.62 7.86 -2.39 -0.02 0.60 16 33 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.12 0.81 7.69 -2.39 -0.02 0.80 16 35 H 0.12 0.82 7.94 -2.38 -0.02 0.81 16 36 H 0.12 0.23 5.93 -2.39 -0.01 0.22 16 37 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.08 1.24 6.19 -2.39 -0.01 1.23 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.06 2.30 5.88 -2.39 -0.01 2.29 16 43 H 0.10 2.39 5.98 -2.39 -0.01 2.38 16 44 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.10 3.64 5.96 -2.38 -0.01 3.63 16 46 H 0.06 2.14 8.12 -2.39 -0.02 2.12 16 47 H 0.38 19.47 6.73 -92.71 -0.62 18.85 16 48 H 0.26 14.82 6.77 -92.71 -0.63 14.19 16 49 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.06 2.08 5.38 -2.39 -0.01 2.07 16 Total: -1.00 -86.03 398.55 1.40 -84.63 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.46 Total: 32.35 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 7.65 Total: 19.01 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -7.70 Total: -122.96 kcal Atomic # 8 Polarization: -64.43 SS G_CDS: -1.07 Total: -65.49 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.05 Total: 52.47 kcal Total: -86.03 1.40 -84.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752988443.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.057 kcal (2) G-P(sol) polarization free energy of solvation -86.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds