Wall clock time and date at job start Sat Apr 11 2020 05:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42892 * 114.00461 * 2 1 4 4 C 1.53000 * 109.47338 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47433 * 179.97438 * 4 3 2 6 6 C 1.50706 * 115.54643 * 294.96687 * 5 4 3 7 7 O 1.21285 * 119.99712 * 114.02183 * 6 5 4 8 8 N 1.34770 * 120.00171 * 294.01204 * 6 5 4 9 9 C 1.46498 * 120.00513 * 174.81620 * 8 6 5 10 10 C 1.52994 * 109.47768 * 180.02562 * 9 8 6 11 11 C 1.53515 * 114.17347 * 174.99707 * 10 9 8 12 12 N 1.47478 * 87.92965 * 139.86490 * 11 10 9 13 13 C 1.46901 * 111.00029 * 221.29958 * 12 11 10 14 14 C 1.50693 * 109.47415 * 169.99992 * 13 12 11 15 15 O 1.21293 * 120.00272 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00007 * 179.97438 * 14 13 12 17 17 C 1.37096 * 119.99771 * 180.02562 * 16 14 13 18 18 H 1.07994 * 120.00464 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99911 * 179.97438 * 17 16 14 20 20 N 1.31418 * 119.99621 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00074 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46966 * 59.99940 * 21 19 17 23 23 H 1.48500 * 109.46990 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46999 * 300.00049 * 21 19 17 25 25 C 1.47482 * 87.83661 * 332.99074 * 12 11 10 26 26 C 1.53000 * 117.49945 * 80.63447 * 5 4 3 27 27 C 1.52999 * 117.50257 * 149.29787 * 5 4 3 28 28 H 1.09000 * 109.47512 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46948 * 300.00801 * 1 2 3 30 30 H 1.09005 * 109.46771 * 59.99674 * 1 2 3 31 31 H 1.09000 * 109.47306 * 59.99528 * 3 2 1 32 32 H 1.08995 * 109.47100 * 299.99741 * 3 2 1 33 33 H 1.09002 * 109.47093 * 59.98704 * 4 3 2 34 34 H 1.09004 * 109.47217 * 299.98923 * 4 3 2 35 35 H 0.97000 * 119.99921 * 354.82011 * 8 6 5 36 36 H 1.09000 * 109.47094 * 59.99562 * 9 8 6 37 37 H 1.09005 * 109.47074 * 300.00598 * 9 8 6 38 38 H 1.09010 * 113.25472 * 42.05031 * 10 9 8 39 39 H 1.08999 * 113.46937 * 25.09710 * 11 10 9 40 40 H 1.08993 * 113.47444 * 254.63128 * 11 10 9 41 41 H 1.09005 * 109.46920 * 49.99751 * 13 12 11 42 42 H 1.08997 * 109.47004 * 290.00311 * 13 12 11 43 43 H 0.96998 * 120.00212 * 0.02562 * 16 14 13 44 44 H 0.97001 * 119.99090 * 180.02562 * 20 19 17 45 45 H 1.09003 * 113.47358 * 141.77705 * 25 12 11 46 46 H 1.08998 * 113.48033 * 272.24337 * 25 12 11 47 47 H 1.09000 * 117.49672 * 215.00170 * 26 5 4 48 48 H 1.08998 * 117.49997 * 0.02738 * 26 5 4 49 49 H 1.09000 * 117.49695 * 359.97438 * 27 5 4 50 50 H 1.09000 * 117.50115 * 144.97002 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1579 2.5821 0.0000 6 6 3.8985 3.4085 -1.2333 7 8 3.2274 4.4160 -1.1580 8 7 4.4123 3.0282 -2.4197 9 6 4.0679 3.7660 -3.6376 10 6 4.7783 3.1330 -4.8356 11 6 4.3975 3.7485 -6.1894 12 7 5.8166 3.6420 -6.5766 13 6 6.2563 4.8422 -7.3006 14 6 7.7540 4.8103 -7.4634 15 8 8.3926 3.8794 -7.0196 16 7 8.3841 5.8160 -8.1023 17 6 9.7466 5.7866 -8.2508 18 1 10.3152 4.9578 -7.8557 19 6 10.3961 6.8232 -8.9099 20 7 9.7042 7.8315 -9.3912 21 14 12.2528 6.7835 -9.1118 22 1 12.6416 5.5721 -9.8775 23 1 12.6969 7.9960 -9.8453 24 1 12.8956 6.7507 -7.7736 25 6 6.1564 3.7346 -5.1444 26 6 4.2431 3.3181 1.3386 27 6 5.5111 2.7532 0.6933 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8463 0.8899 32 1 1.6888 1.8462 -0.8900 33 1 3.8575 0.6432 -0.8890 34 1 3.8568 0.6438 0.8910 35 1 5.0102 2.2658 -2.4673 36 1 4.3832 4.8043 -3.5348 37 1 2.9897 3.7275 -3.7930 38 1 4.7605 2.0431 -4.8200 39 1 4.0437 4.7767 -6.1147 40 1 3.7369 3.1168 -6.7831 41 1 5.9708 5.7310 -6.7377 42 1 5.7844 4.8673 -8.2828 43 1 7.8735 6.5606 -8.4569 44 1 10.1576 8.5549 -9.8516 45 1 6.9864 3.0911 -4.8527 46 1 6.2720 4.7591 -4.7909 47 1 4.1116 4.4001 1.3273 48 1 3.8561 2.8065 2.2198 49 1 5.9577 1.8701 1.1503 50 1 6.2138 3.4632 0.2572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753403789.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:00 Heat of formation + Delta-G solvation = -59.161374 kcal Electronic energy + Delta-G solvation = -28970.050556 eV Core-core repulsion = 24806.408435 eV Total energy + Delta-G solvation = -4163.642121 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.70376 -40.06877 -38.29897 -37.78084 -37.01973 -34.96514 -33.90350 -31.53680 -31.35661 -30.82977 -27.75938 -26.89183 -25.82136 -25.14599 -24.16130 -23.23319 -22.73192 -22.11572 -20.32248 -19.32890 -19.07886 -17.89375 -17.36334 -16.79449 -16.48367 -16.34320 -16.16953 -15.60690 -15.47394 -15.32823 -15.15045 -14.81822 -14.62329 -14.21051 -14.08753 -13.73218 -13.64782 -13.29213 -12.97723 -12.72502 -12.54566 -12.48195 -12.13753 -11.97842 -11.91575 -11.75577 -11.63332 -11.50669 -11.39579 -11.06703 -10.94945 -10.72349 -10.52101 -10.45656 -10.42706 -10.22048 -10.07639 -9.95362 -9.50418 -9.28951 -8.74956 -8.26893 -7.97457 -6.42503 -3.83441 2.30790 2.80641 3.08778 3.19272 3.25061 3.29369 3.48360 3.88139 4.01548 4.18683 4.23303 4.28114 4.40705 4.47491 4.50646 4.66864 4.73595 4.83255 4.92303 4.96593 5.04014 5.06593 5.10041 5.21640 5.24481 5.26063 5.31451 5.35708 5.38670 5.49593 5.52020 5.54430 5.55693 5.62783 5.70814 5.72756 5.73668 5.79647 6.01379 6.14039 6.24406 6.28453 6.56085 6.72557 7.18254 7.25850 7.54016 7.96753 8.04383 8.60341 9.16823 9.52954 10.04695 10.75151 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019026 B = 0.001818 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.294370 B =15395.321816 C =16098.240670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.063 3.937 4 C -0.072 4.072 5 C -0.163 4.163 6 C 0.549 3.451 7 O -0.538 6.538 8 N -0.720 5.720 9 C 0.131 3.869 10 C -0.134 4.134 11 C 0.005 3.995 12 N -0.443 5.443 13 C 0.009 3.991 14 C 0.444 3.556 15 O -0.580 6.580 16 N -0.564 5.564 17 C -0.300 4.300 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.019 3.981 26 C -0.144 4.144 27 C -0.152 4.152 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.405 0.595 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.091 0.909 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.091 0.909 46 H 0.067 0.933 47 H 0.105 0.895 48 H 0.104 0.896 49 H 0.107 0.893 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.237 -10.736 18.999 27.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.014 4.014 4 C -0.110 4.110 5 C -0.166 4.166 6 C 0.335 3.665 7 O -0.414 6.414 8 N -0.371 5.371 9 C 0.007 3.993 10 C -0.153 4.153 11 C -0.125 4.125 12 N -0.165 5.165 13 C -0.123 4.123 14 C 0.229 3.771 15 O -0.463 6.463 16 N -0.201 5.201 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.110 4.110 26 C -0.182 4.182 27 C -0.190 4.190 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.239 0.761 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.109 0.891 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.109 0.891 46 H 0.085 0.915 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.125 0.875 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.862 -11.154 18.760 27.580 hybrid contribution 0.411 1.284 -0.199 1.362 sum -16.451 -9.870 18.561 26.694 Atomic orbital electron populations 1.22745 0.80769 1.02779 1.00144 1.87832 1.19943 1.27970 1.95494 1.22473 0.93606 0.84524 1.00790 1.20928 0.93172 0.92594 1.04297 1.21366 1.04257 0.97417 0.93545 1.19478 0.79030 0.84522 0.83518 1.90712 1.39432 1.25519 1.85768 1.45941 1.49834 1.34462 1.06889 1.21390 0.99669 0.95928 0.82324 1.23063 0.97385 1.01395 0.93500 1.23842 0.93617 1.00518 0.94549 1.68827 1.03835 1.34214 1.09646 1.22494 0.96875 0.92322 1.00636 1.19660 0.88059 0.84847 0.84550 1.90517 1.67085 1.35594 1.53150 1.41863 1.08006 1.20301 1.49903 1.19646 0.82094 1.07032 1.34173 0.87994 1.25268 1.00618 0.95275 0.96775 1.69610 1.36641 1.10030 1.38021 0.85910 0.82137 0.77565 0.78561 1.19881 1.20958 1.19931 1.23775 0.96922 1.00594 0.89704 1.23041 1.00335 1.01121 0.93673 1.23146 0.89859 1.03847 1.02110 0.89513 0.94042 0.93970 0.92900 0.93267 0.90094 0.89824 0.76077 0.91109 0.91177 0.87374 0.91193 0.89435 0.92674 0.89052 0.77493 0.91816 0.89073 0.91529 0.87666 0.87783 0.87464 0.87914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.58 10.70 -35.23 -0.38 -3.96 16 3 C 0.06 0.52 5.80 37.16 0.22 0.73 16 4 C -0.07 -0.51 5.46 -26.73 -0.15 -0.66 16 5 C -0.16 -1.29 1.90 -155.66 -0.30 -1.59 16 6 C 0.55 5.92 6.46 -10.99 -0.07 5.84 16 7 O -0.54 -7.82 16.72 5.55 0.09 -7.73 16 8 N -0.72 -6.69 5.55 -60.29 -0.33 -7.03 16 9 C 0.13 1.32 5.59 -4.05 -0.02 1.29 16 10 C -0.13 -1.42 4.08 -90.09 -0.37 -1.79 16 11 C 0.00 0.05 7.29 -7.54 -0.05 0.00 16 12 N -0.44 -7.21 6.06 -246.09 -1.49 -8.71 16 13 C 0.01 0.16 5.31 -4.98 -0.03 0.13 16 14 C 0.44 10.56 7.62 -10.99 -0.08 10.47 16 15 O -0.58 -15.77 15.34 5.55 0.09 -15.68 16 16 N -0.56 -14.40 5.29 -10.97 -0.06 -14.46 16 17 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 18 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 19 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 20 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 21 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.02 0.28 6.29 -7.55 -0.05 0.23 16 26 C -0.14 -1.05 9.78 -26.69 -0.26 -1.31 16 27 C -0.15 -1.00 9.93 -26.69 -0.26 -1.27 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.46 7.71 -51.93 -0.40 0.06 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.40 3.00 8.48 -40.82 -0.35 2.66 16 36 H 0.07 0.81 7.82 -51.93 -0.41 0.41 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.11 1.06 8.14 -51.92 -0.42 0.63 16 39 H 0.07 0.75 7.73 -51.93 -0.40 0.35 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.88 7.56 -51.93 -0.39 0.49 16 42 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 43 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 44 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 46 H 0.07 0.99 7.45 -51.93 -0.39 0.61 16 47 H 0.10 0.91 8.00 -51.93 -0.42 0.49 16 48 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 417.33 15.07 6.29 6.29 Total: -1.00 -34.37 417.33 -9.15 -43.52 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -8.50 Total: 10.17 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -0.55 Total: 5.37 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -1.16 Total: -54.07 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.20 Total: -27.37 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.37 -9.15 -43.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753403789.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.642 kcal (2) G-P(sol) polarization free energy of solvation -34.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds