Wall clock time and date at job start Sat Apr 11 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42892 * 114.00461 * 2 1 4 4 C 1.53000 * 109.47338 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47433 * 179.97438 * 4 3 2 6 6 C 1.50706 * 115.54643 * 294.96687 * 5 4 3 7 7 O 1.21285 * 119.99712 * 114.02183 * 6 5 4 8 8 N 1.34770 * 120.00171 * 294.01204 * 6 5 4 9 9 C 1.46498 * 120.00513 * 174.81620 * 8 6 5 10 10 C 1.52994 * 109.47768 * 180.02562 * 9 8 6 11 11 C 1.53515 * 114.17347 * 174.99707 * 10 9 8 12 12 N 1.47478 * 87.92965 * 139.86490 * 11 10 9 13 13 C 1.46901 * 111.00029 * 221.29958 * 12 11 10 14 14 C 1.50693 * 109.47415 * 169.99992 * 13 12 11 15 15 O 1.21293 * 120.00272 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00007 * 179.97438 * 14 13 12 17 17 C 1.37096 * 119.99771 * 180.02562 * 16 14 13 18 18 H 1.07994 * 120.00464 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99911 * 179.97438 * 17 16 14 20 20 N 1.31418 * 119.99621 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00074 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46966 * 59.99940 * 21 19 17 23 23 H 1.48500 * 109.46990 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46999 * 300.00049 * 21 19 17 25 25 C 1.47482 * 87.83661 * 332.99074 * 12 11 10 26 26 C 1.53000 * 117.49945 * 80.63447 * 5 4 3 27 27 C 1.52999 * 117.50257 * 149.29787 * 5 4 3 28 28 H 1.09000 * 109.47512 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46948 * 300.00801 * 1 2 3 30 30 H 1.09005 * 109.46771 * 59.99674 * 1 2 3 31 31 H 1.09000 * 109.47306 * 59.99528 * 3 2 1 32 32 H 1.08995 * 109.47100 * 299.99741 * 3 2 1 33 33 H 1.09002 * 109.47093 * 59.98704 * 4 3 2 34 34 H 1.09004 * 109.47217 * 299.98923 * 4 3 2 35 35 H 0.97000 * 119.99921 * 354.82011 * 8 6 5 36 36 H 1.09000 * 109.47094 * 59.99562 * 9 8 6 37 37 H 1.09005 * 109.47074 * 300.00598 * 9 8 6 38 38 H 1.09010 * 113.25472 * 42.05031 * 10 9 8 39 39 H 1.08999 * 113.46937 * 25.09710 * 11 10 9 40 40 H 1.08993 * 113.47444 * 254.63128 * 11 10 9 41 41 H 1.09005 * 109.46920 * 49.99751 * 13 12 11 42 42 H 1.08997 * 109.47004 * 290.00311 * 13 12 11 43 43 H 0.96998 * 120.00212 * 0.02562 * 16 14 13 44 44 H 0.97001 * 119.99090 * 180.02562 * 20 19 17 45 45 H 1.09003 * 113.47358 * 141.77705 * 25 12 11 46 46 H 1.08998 * 113.48033 * 272.24337 * 25 12 11 47 47 H 1.09000 * 117.49672 * 215.00170 * 26 5 4 48 48 H 1.08998 * 117.49997 * 0.02738 * 26 5 4 49 49 H 1.09000 * 117.49695 * 359.97438 * 27 5 4 50 50 H 1.09000 * 117.50115 * 144.97002 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1579 2.5821 0.0000 6 6 3.8985 3.4085 -1.2333 7 8 3.2274 4.4160 -1.1580 8 7 4.4123 3.0282 -2.4197 9 6 4.0679 3.7660 -3.6376 10 6 4.7783 3.1330 -4.8356 11 6 4.3975 3.7485 -6.1894 12 7 5.8166 3.6420 -6.5766 13 6 6.2563 4.8422 -7.3006 14 6 7.7540 4.8103 -7.4634 15 8 8.3926 3.8794 -7.0196 16 7 8.3841 5.8160 -8.1023 17 6 9.7466 5.7866 -8.2508 18 1 10.3152 4.9578 -7.8557 19 6 10.3961 6.8232 -8.9099 20 7 9.7042 7.8315 -9.3912 21 14 12.2528 6.7835 -9.1118 22 1 12.6416 5.5721 -9.8775 23 1 12.6969 7.9960 -9.8453 24 1 12.8956 6.7507 -7.7736 25 6 6.1564 3.7346 -5.1444 26 6 4.2431 3.3181 1.3386 27 6 5.5111 2.7532 0.6933 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8463 0.8899 32 1 1.6888 1.8462 -0.8900 33 1 3.8575 0.6432 -0.8890 34 1 3.8568 0.6438 0.8910 35 1 5.0102 2.2658 -2.4673 36 1 4.3832 4.8043 -3.5348 37 1 2.9897 3.7275 -3.7930 38 1 4.7605 2.0431 -4.8200 39 1 4.0437 4.7767 -6.1147 40 1 3.7369 3.1168 -6.7831 41 1 5.9708 5.7310 -6.7377 42 1 5.7844 4.8673 -8.2828 43 1 7.8735 6.5606 -8.4569 44 1 10.1576 8.5549 -9.8516 45 1 6.9864 3.0911 -4.8527 46 1 6.2720 4.7591 -4.7909 47 1 4.1116 4.4001 1.3273 48 1 3.8561 2.8065 2.2198 49 1 5.9577 1.8701 1.1503 50 1 6.2138 3.4632 0.2572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753403789.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:59 Heat of formation + Delta-G solvation = -86.668293 kcal Electronic energy + Delta-G solvation = -28971.243346 eV Core-core repulsion = 24806.408435 eV Total energy + Delta-G solvation = -4164.834910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67600 -41.07852 -39.62183 -38.92134 -37.70902 -36.06690 -35.78365 -33.34306 -32.26695 -31.94509 -28.96109 -27.47520 -26.93512 -26.77864 -25.11244 -24.09221 -23.45190 -22.95739 -21.26128 -21.01060 -20.09030 -19.87374 -18.08890 -17.84965 -17.41078 -17.37332 -17.01969 -16.65679 -16.60768 -16.47671 -16.24764 -15.97286 -15.80956 -15.57701 -15.15024 -15.13097 -14.60943 -14.31309 -14.19400 -13.70815 -13.53588 -13.50106 -13.39802 -13.13161 -13.05217 -12.87326 -12.51880 -12.46352 -12.44431 -12.37647 -12.19333 -12.14252 -11.86630 -11.59381 -11.53281 -11.46679 -11.07461 -10.80105 -10.67094 -10.36150 -10.15384 -10.04056 -9.78982 -8.48456 -5.97549 1.38242 1.40149 1.49152 1.51287 2.02276 2.05412 2.27449 2.50311 2.84788 2.91144 3.17351 3.23181 3.41880 3.61925 3.70673 3.74415 3.88625 3.93452 4.14263 4.15229 4.16204 4.26997 4.28796 4.36557 4.46873 4.47287 4.49732 4.50217 4.54789 4.59996 4.67282 4.73487 4.78141 4.81372 4.84728 4.86600 4.96945 4.99055 5.07933 5.18075 5.19633 5.33903 5.38886 5.42871 5.88582 6.06340 6.15367 6.48542 6.57704 7.10217 7.16630 7.53167 8.08794 8.68681 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019026 B = 0.001818 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.294370 B =15395.321816 C =16098.240670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.063 3.937 4 C -0.065 4.065 5 C -0.167 4.167 6 C 0.546 3.454 7 O -0.581 6.581 8 N -0.713 5.713 9 C 0.137 3.863 10 C -0.104 4.104 11 C 0.010 3.990 12 N -0.473 5.473 13 C 0.021 3.979 14 C 0.440 3.560 15 O -0.618 6.618 16 N -0.574 5.574 17 C -0.335 4.335 18 H 0.079 0.921 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.994 3.006 22 H -0.272 1.272 23 H -0.270 1.270 24 H -0.272 1.272 25 C 0.012 3.988 26 C -0.148 4.148 27 C -0.139 4.139 28 H 0.101 0.899 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.033 0.967 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.415 0.585 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.110 0.890 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.086 0.914 48 H 0.124 0.876 49 H 0.131 0.869 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.888 -11.575 19.616 28.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.013 4.013 4 C -0.103 4.103 5 C -0.170 4.170 6 C 0.333 3.667 7 O -0.461 6.461 8 N -0.364 5.364 9 C 0.013 3.987 10 C -0.123 4.123 11 C -0.119 4.119 12 N -0.195 5.195 13 C -0.110 4.110 14 C 0.227 3.773 15 O -0.504 6.504 16 N -0.211 5.211 17 C -0.465 4.465 18 H 0.097 0.903 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.817 3.183 22 H -0.197 1.197 23 H -0.194 1.194 24 H -0.197 1.197 25 C -0.117 4.117 26 C -0.185 4.185 27 C -0.176 4.176 28 H 0.119 0.881 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.252 0.748 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.141 0.859 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.094 0.906 42 H 0.128 0.872 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.105 0.895 48 H 0.142 0.858 49 H 0.149 0.851 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.528 -12.004 19.365 28.746 hybrid contribution 0.563 1.526 -0.377 1.670 sum -16.965 -10.478 18.988 27.534 Atomic orbital electron populations 1.22921 0.79653 1.03923 1.00595 1.87802 1.21306 1.28287 1.95553 1.22471 0.94469 0.84248 1.00122 1.20908 0.92188 0.91938 1.05261 1.21308 1.05716 0.97553 0.92466 1.19980 0.78144 0.84144 0.84467 1.90688 1.41437 1.27517 1.86462 1.45910 1.49533 1.34457 1.06478 1.21270 0.99921 0.95197 0.82355 1.22869 0.94149 1.01908 0.93354 1.23933 0.91191 1.01930 0.94799 1.68822 1.06912 1.33536 1.10229 1.22383 0.92100 0.94155 1.02409 1.20735 0.90607 0.83404 0.82557 1.90483 1.68834 1.36867 1.54257 1.41946 1.07475 1.21055 1.50663 1.19624 0.83496 1.07333 1.36007 0.90341 1.26061 1.04934 0.94500 0.95799 1.69673 1.38254 1.10273 1.37878 0.84978 0.76733 0.77982 0.78582 1.19700 1.19415 1.19683 1.23775 0.98436 1.00135 0.89389 1.23099 1.01061 1.00279 0.94066 1.23232 0.89088 1.04314 1.00972 0.88092 0.93201 0.93935 0.92701 0.94855 0.89732 0.88209 0.74839 0.92517 0.90365 0.85940 0.89771 0.87509 0.90623 0.87223 0.77047 0.91275 0.91488 0.92231 0.89526 0.85798 0.85057 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -6.93 10.70 -148.98 -1.59 -8.52 16 3 C 0.06 0.99 5.80 71.98 0.42 1.40 16 4 C -0.07 -0.81 5.46 30.59 0.17 -0.64 16 5 C -0.17 -2.46 1.90 -52.93 -0.10 -2.56 16 6 C 0.55 11.52 6.46 87.66 0.57 12.09 16 7 O -0.58 -17.12 16.72 -3.04 -0.05 -17.17 16 8 N -0.71 -12.57 5.55 -463.07 -2.57 -15.14 16 9 C 0.14 2.58 5.59 86.38 0.48 3.07 16 10 C -0.10 -2.02 4.08 -10.45 -0.04 -2.06 16 11 C 0.01 0.22 7.29 83.58 0.61 0.83 16 12 N -0.47 -14.88 6.06 -932.50 -5.65 -20.53 16 13 C 0.02 0.74 5.31 85.55 0.45 1.19 16 14 C 0.44 21.27 7.62 87.65 0.67 21.94 16 15 O -0.62 -34.64 15.34 -3.07 -0.05 -34.68 16 16 N -0.57 -29.90 5.29 -306.99 -1.62 -31.53 16 17 C -0.34 -19.24 9.68 84.04 0.81 -18.43 16 18 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 19 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 20 N -0.92 -50.00 13.05 21.67 0.28 -49.71 16 21 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 C 0.01 0.34 6.29 83.57 0.53 0.87 16 26 C -0.15 -1.99 9.78 30.62 0.30 -1.69 16 27 C -0.14 -1.59 9.93 30.62 0.30 -1.29 16 28 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.03 0.61 7.71 -2.39 -0.02 0.59 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 0.94 8.09 -2.38 -0.02 0.92 16 35 H 0.41 5.58 8.48 -92.71 -0.79 4.79 16 36 H 0.06 1.27 7.82 -2.39 -0.02 1.25 16 37 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.12 2.09 8.14 -2.38 -0.02 2.08 16 39 H 0.08 1.56 7.73 -2.39 -0.02 1.54 16 40 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.08 2.32 7.56 -2.38 -0.02 2.30 16 42 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 43 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 44 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 45 H 0.07 2.24 8.13 -2.39 -0.02 2.22 16 46 H 0.06 1.79 7.45 -2.39 -0.02 1.77 16 47 H 0.09 1.51 8.00 -2.39 -0.02 1.49 16 48 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -75.99 417.33 -2.92 -78.91 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: -0.57 Total: 37.15 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 6.88 Total: 16.02 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -9.57 Total: -116.92 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -1.69 Total: -60.37 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -75.99 -2.92 -78.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753403789.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.759 kcal (2) G-P(sol) polarization free energy of solvation -75.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds