Wall clock time and date at job start Sat Apr 11 2020 05:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99634 * 2 1 4 4 C 1.50699 * 109.46602 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00563 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99363 * 180.02562 * 4 3 2 7 7 C 1.46502 * 120.00460 * 0.02562 * 6 4 3 8 8 C 1.46503 * 119.99863 * 179.97438 * 6 4 3 9 9 C 1.50698 * 109.46767 * 89.99764 * 8 6 4 10 10 O 1.21280 * 120.00289 * 0.02562 * 9 8 6 11 11 N 1.34785 * 119.99747 * 180.02562 * 9 8 6 12 12 C 1.46818 * 120.30124 * 0.02562 * 11 9 8 13 13 C 1.52969 * 107.39097 * 234.99539 * 12 11 9 14 14 C 1.53556 * 109.95484 * 298.40858 * 13 12 11 15 15 H 1.08993 * 110.97744 * 289.23706 * 14 13 12 16 16 C 1.51775 * 112.12039 * 53.07605 * 14 13 12 17 17 H 1.09002 * 104.98442 * 206.69905 * 16 14 13 18 18 C 1.53378 * 105.83820 * 95.17794 * 16 14 13 19 19 C 1.54470 * 102.54150 * 29.49096 * 18 16 14 20 20 N 1.46869 * 106.65222 * 332.25927 * 19 18 16 21 21 C 1.36937 * 125.33653 * 195.40191 * 20 19 18 22 22 H 1.07998 * 119.99929 * 170.65136 * 21 20 19 23 23 C 1.38809 * 120.00203 * 350.66017 * 21 20 19 24 24 N 1.31623 * 119.99845 * 351.05033 * 23 21 20 25 25 Si 1.86796 * 120.00365 * 171.05159 * 23 21 20 26 26 H 1.48495 * 109.47358 * 94.73435 * 25 23 21 27 27 H 1.48506 * 109.47418 * 214.73639 * 25 23 21 28 28 H 1.48506 * 109.46851 * 334.73371 * 25 23 21 29 29 C 1.45649 * 120.30246 * 180.02562 * 11 9 8 30 30 H 1.08992 * 109.47400 * 59.99979 * 1 2 3 31 31 H 1.09004 * 109.46495 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46716 * 299.99191 * 1 2 3 33 33 H 1.09001 * 109.46835 * 60.00808 * 3 2 1 34 34 H 1.08992 * 109.47134 * 300.00266 * 3 2 1 35 35 H 1.08994 * 109.46970 * 270.00297 * 7 6 4 36 36 H 1.09005 * 109.46785 * 29.99717 * 7 6 4 37 37 H 1.08999 * 109.47165 * 149.99444 * 7 6 4 38 38 H 1.08999 * 109.47097 * 330.00554 * 8 6 4 39 39 H 1.08989 * 109.47327 * 210.00127 * 8 6 4 40 40 H 1.08998 * 109.87553 * 354.46567 * 12 11 9 41 41 H 1.08997 * 109.87242 * 115.45515 * 12 11 9 42 42 H 1.08999 * 109.38609 * 58.68267 * 13 12 11 43 43 H 1.09001 * 109.38591 * 178.36663 * 13 12 11 44 44 H 1.08999 * 110.79388 * 271.23004 * 18 16 14 45 45 H 1.08999 * 110.96437 * 147.82436 * 18 16 14 46 46 H 1.08998 * 110.02533 * 212.96153 * 19 18 16 47 47 H 1.08993 * 110.06482 * 91.58037 * 19 18 16 48 48 H 0.96997 * 119.99812 * 180.02562 * 24 23 21 49 49 H 1.09001 * 108.44500 * 22.19668 * 29 11 9 50 50 H 1.08999 * 108.44069 * 264.89231 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0342 0.0916 -0.0006 6 7 4.2764 2.2970 -0.0002 7 6 3.6463 3.6196 0.0014 8 6 5.7369 2.1814 -0.0003 9 6 6.2375 2.1422 -1.4211 10 8 5.4519 2.2052 -2.3429 11 7 7.5585 2.0372 -1.6675 12 6 8.5154 1.9600 -0.5566 13 6 9.5399 3.0781 -0.7571 14 6 10.2925 2.8683 -2.0791 15 1 10.9660 2.0139 -2.0133 16 6 9.3472 2.7043 -3.2551 17 1 9.9010 2.1087 -3.9809 18 6 9.2109 4.0982 -3.8802 19 6 10.5751 4.7462 -3.5558 20 7 11.0620 4.1084 -2.3256 21 6 12.0735 4.5835 -1.5341 22 1 12.2632 4.1321 -0.5715 23 6 12.8548 5.6452 -1.9689 24 7 12.7435 6.0809 -3.2060 25 14 14.0641 6.4558 -0.7986 26 1 15.4076 5.8488 -0.9763 27 1 14.1356 7.9103 -1.0896 28 1 13.6104 6.2527 0.6008 29 6 8.0497 1.9994 -3.0381 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.6887 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.4893 3.9484 -1.0258 36 1 2.6869 3.5643 0.5159 37 1 4.2939 4.3299 0.5155 38 1 6.0288 1.2653 0.5131 39 1 6.1693 3.0396 0.5138 40 1 7.9952 2.0997 0.3910 41 1 9.0157 0.9917 -0.5652 42 1 9.0267 4.0394 -0.7793 43 1 10.2518 3.0687 0.0683 44 1 8.3977 4.6539 -3.4133 45 1 9.0618 4.0295 -4.9578 46 1 10.4511 5.8174 -3.3969 47 1 11.2766 4.5689 -4.3709 48 1 13.2897 6.8225 -3.5099 49 1 7.2990 2.4516 -3.6861 50 1 8.1706 0.9568 -3.3324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753873926.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:07 Heat of formation + Delta-G solvation = -66.767520 kcal Electronic energy + Delta-G solvation = -30770.391413 eV Core-core repulsion = 26606.419465 eV Total energy + Delta-G solvation = -4163.971948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.67662 -39.76392 -38.28606 -37.60665 -35.67893 -35.30904 -32.91809 -31.62093 -30.68071 -29.53634 -28.52613 -27.88763 -26.74722 -25.74409 -24.95671 -23.38472 -22.69140 -20.58793 -20.25493 -19.27770 -18.03648 -17.70757 -17.42924 -16.97166 -16.87656 -16.54692 -16.03891 -15.45411 -15.40961 -14.82766 -14.80476 -14.57391 -14.45093 -13.84274 -13.62480 -13.33267 -13.24328 -13.20745 -12.94052 -12.77384 -12.61743 -12.56131 -12.24784 -12.02352 -11.78523 -11.71619 -11.56251 -11.40030 -11.03061 -10.81449 -10.77010 -10.19170 -10.16708 -10.11006 -10.01048 -9.95721 -9.84782 -9.65596 -9.53229 -8.86563 -8.63821 -8.40593 -6.83156 -5.75756 -3.09445 2.23004 2.45039 2.68630 3.17214 3.36675 3.42258 3.44223 3.58179 4.25563 4.44507 4.50766 4.58440 4.77554 4.78944 4.89576 4.93940 4.99013 5.01758 5.10337 5.13280 5.20226 5.26410 5.29361 5.34497 5.39557 5.43660 5.51119 5.62370 5.84343 5.93988 5.95585 6.01417 6.07335 6.21319 6.29014 6.36356 6.54391 6.58729 6.61867 6.77479 6.87242 7.01970 7.04634 7.49769 7.51140 7.62121 7.78345 7.91263 8.23342 8.25290 9.18180 9.79254 10.46094 11.36253 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.002341 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.884316 B =11957.204314 C =12287.252424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.521 3.479 5 O -0.516 6.516 6 N -0.600 5.600 7 C 0.076 3.924 8 C 0.099 3.901 9 C 0.499 3.501 10 O -0.541 6.541 11 N -0.598 5.598 12 C 0.104 3.896 13 C -0.139 4.139 14 C 0.172 3.828 15 H 0.042 0.958 16 C -0.107 4.107 17 H 0.065 0.935 18 C -0.135 4.135 19 C 0.177 3.823 20 N -0.598 5.598 21 C -0.227 4.227 22 H 0.076 0.924 23 C -0.008 4.008 24 N -0.917 5.917 25 Si 0.909 3.091 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.137 3.863 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.035 0.965 48 H 0.252 0.748 49 H 0.083 0.917 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.296 -6.196 7.725 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.308 3.692 5 O -0.390 6.390 6 N -0.335 5.335 7 C -0.067 4.067 8 C -0.027 4.027 9 C 0.285 3.715 10 O -0.418 6.418 11 N -0.332 5.332 12 C -0.020 4.020 13 C -0.179 4.179 14 C 0.065 3.935 15 H 0.060 0.940 16 C -0.126 4.126 17 H 0.084 0.916 18 C -0.173 4.173 19 C 0.052 3.948 20 N -0.323 5.323 21 C -0.356 4.356 22 H 0.094 0.906 23 C -0.204 4.204 24 N -0.564 5.564 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.206 1.206 29 C 0.014 3.986 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.062 0.938 49 H 0.101 0.899 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.150 -6.753 7.186 23.336 hybrid contribution 0.694 0.919 0.446 1.235 sum -20.456 -5.834 7.632 22.600 Atomic orbital electron populations 1.22844 0.80311 1.03375 1.00124 1.88024 1.19829 1.25253 1.95414 1.22253 0.91444 0.86953 1.02567 1.20201 0.88772 0.84028 0.76220 1.90730 1.74421 1.26171 1.47629 1.47320 1.05318 1.06681 1.74152 1.21923 0.98505 0.83407 1.02860 1.21388 0.80551 1.05709 0.95035 1.21009 0.82097 0.76482 0.91875 1.90661 1.54890 1.50138 1.46100 1.47761 1.05659 1.72011 1.07770 1.21881 0.91192 1.00491 0.88405 1.22498 0.97274 0.97425 1.00718 1.20534 0.90997 0.90881 0.91103 0.93984 1.20720 0.94652 0.97991 0.99272 0.91643 1.22646 1.00663 0.95084 0.98930 1.21103 0.88671 0.96218 0.88830 1.44714 1.38954 1.21421 1.27183 1.18967 1.06564 1.12627 0.97406 0.90600 1.24838 0.99156 1.00164 0.96282 1.69984 1.42790 1.29004 1.14622 0.86154 0.81038 0.78807 0.80047 1.21681 1.21713 1.20636 1.20306 0.96038 0.99761 0.82530 0.93715 0.89042 0.93822 0.90198 0.89935 0.91655 0.90905 0.90390 0.86787 0.87059 0.90435 0.91047 0.91400 0.91072 0.92721 0.92029 0.93027 0.94708 0.93765 0.89887 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -4.19 10.24 -55.14 -0.56 -4.75 16 3 C 0.05 0.44 4.97 36.01 0.18 0.62 16 4 C 0.52 6.72 7.75 -10.98 -0.09 6.63 16 5 O -0.52 -8.94 16.08 -14.35 -0.23 -9.17 16 6 N -0.60 -6.49 2.36 -182.96 -0.43 -6.93 16 7 C 0.08 0.52 10.29 59.85 0.62 1.14 16 8 C 0.10 1.11 4.26 -5.19 -0.02 1.09 16 9 C 0.50 7.44 7.75 -10.98 -0.09 7.35 16 10 O -0.54 -9.83 15.88 5.56 0.09 -9.74 16 11 N -0.60 -8.70 3.00 -176.34 -0.53 -9.23 16 12 C 0.10 1.31 6.34 -3.88 -0.02 1.28 16 13 C -0.14 -2.25 5.19 -26.46 -0.14 -2.39 16 14 C 0.17 3.31 3.44 -67.43 -0.23 3.08 16 15 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 16 C -0.11 -1.84 2.45 -92.89 -0.23 -2.06 16 17 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 18 C -0.13 -2.52 6.36 -25.76 -0.16 -2.69 16 19 C 0.18 4.20 5.35 -3.07 -0.02 4.18 16 20 N -0.60 -14.47 3.04 -163.71 -0.50 -14.96 16 21 C -0.23 -6.03 9.80 -15.06 -0.15 -6.17 16 22 H 0.08 1.93 7.71 -52.49 -0.40 1.53 16 23 C -0.01 -0.21 5.42 -17.43 -0.09 -0.30 16 24 N -0.92 -26.51 10.58 55.49 0.59 -25.92 16 25 Si 0.91 21.56 29.56 -169.99 -5.03 16.53 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 C 0.14 2.12 5.95 -6.35 -0.04 2.08 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.08 0.46 7.40 -51.93 -0.38 0.08 16 34 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.30 6.44 -51.93 -0.33 -0.04 16 37 H 0.08 0.43 7.89 -51.93 -0.41 0.02 16 38 H 0.11 1.28 7.19 -51.93 -0.37 0.90 16 39 H 0.11 0.93 7.45 -51.93 -0.39 0.54 16 40 H 0.08 0.76 5.90 -51.93 -0.31 0.45 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.16 7.98 -51.93 -0.41 0.75 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 47 H 0.03 0.92 7.68 -51.93 -0.40 0.52 16 48 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.08 1.37 6.81 -51.93 -0.35 1.02 16 50 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 394.07 15.07 5.94 5.94 Total: -1.00 -36.44 394.07 -8.38 -44.82 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -8.35 Total: -1.73 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 0.63 Total: 15.15 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.87 Total: -57.04 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.71 Total: -23.67 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.44 -8.38 -44.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753873926.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.947 kcal (2) G-P(sol) polarization free energy of solvation -36.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds