Wall clock time and date at job start Sat Apr 11 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99634 * 2 1 4 4 C 1.50699 * 109.46602 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00563 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99363 * 180.02562 * 4 3 2 7 7 C 1.46502 * 120.00460 * 0.02562 * 6 4 3 8 8 C 1.46503 * 119.99863 * 179.97438 * 6 4 3 9 9 C 1.50698 * 109.46767 * 89.99764 * 8 6 4 10 10 O 1.21280 * 120.00289 * 0.02562 * 9 8 6 11 11 N 1.34785 * 119.99747 * 180.02562 * 9 8 6 12 12 C 1.46818 * 120.30124 * 0.02562 * 11 9 8 13 13 C 1.52969 * 107.39097 * 234.99539 * 12 11 9 14 14 C 1.53556 * 109.95484 * 298.40858 * 13 12 11 15 15 H 1.08993 * 110.97744 * 289.23706 * 14 13 12 16 16 C 1.51775 * 112.12039 * 53.07605 * 14 13 12 17 17 H 1.09002 * 104.98442 * 206.69905 * 16 14 13 18 18 C 1.53378 * 105.83820 * 95.17794 * 16 14 13 19 19 C 1.54470 * 102.54150 * 29.49096 * 18 16 14 20 20 N 1.46869 * 106.65222 * 332.25927 * 19 18 16 21 21 C 1.36937 * 125.33653 * 195.40191 * 20 19 18 22 22 H 1.07998 * 119.99929 * 170.65136 * 21 20 19 23 23 C 1.38809 * 120.00203 * 350.66017 * 21 20 19 24 24 N 1.31623 * 119.99845 * 351.05033 * 23 21 20 25 25 Si 1.86796 * 120.00365 * 171.05159 * 23 21 20 26 26 H 1.48495 * 109.47358 * 94.73435 * 25 23 21 27 27 H 1.48506 * 109.47418 * 214.73639 * 25 23 21 28 28 H 1.48506 * 109.46851 * 334.73371 * 25 23 21 29 29 C 1.45649 * 120.30246 * 180.02562 * 11 9 8 30 30 H 1.08992 * 109.47400 * 59.99979 * 1 2 3 31 31 H 1.09004 * 109.46495 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46716 * 299.99191 * 1 2 3 33 33 H 1.09001 * 109.46835 * 60.00808 * 3 2 1 34 34 H 1.08992 * 109.47134 * 300.00266 * 3 2 1 35 35 H 1.08994 * 109.46970 * 270.00297 * 7 6 4 36 36 H 1.09005 * 109.46785 * 29.99717 * 7 6 4 37 37 H 1.08999 * 109.47165 * 149.99444 * 7 6 4 38 38 H 1.08999 * 109.47097 * 330.00554 * 8 6 4 39 39 H 1.08989 * 109.47327 * 210.00127 * 8 6 4 40 40 H 1.08998 * 109.87553 * 354.46567 * 12 11 9 41 41 H 1.08997 * 109.87242 * 115.45515 * 12 11 9 42 42 H 1.08999 * 109.38609 * 58.68267 * 13 12 11 43 43 H 1.09001 * 109.38591 * 178.36663 * 13 12 11 44 44 H 1.08999 * 110.79388 * 271.23004 * 18 16 14 45 45 H 1.08999 * 110.96437 * 147.82436 * 18 16 14 46 46 H 1.08998 * 110.02533 * 212.96153 * 19 18 16 47 47 H 1.08993 * 110.06482 * 91.58037 * 19 18 16 48 48 H 0.96997 * 119.99812 * 180.02562 * 24 23 21 49 49 H 1.09001 * 108.44500 * 22.19668 * 29 11 9 50 50 H 1.08999 * 108.44069 * 264.89231 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0342 0.0916 -0.0006 6 7 4.2764 2.2970 -0.0002 7 6 3.6463 3.6196 0.0014 8 6 5.7369 2.1814 -0.0003 9 6 6.2375 2.1422 -1.4211 10 8 5.4519 2.2052 -2.3429 11 7 7.5585 2.0372 -1.6675 12 6 8.5154 1.9600 -0.5566 13 6 9.5399 3.0781 -0.7571 14 6 10.2925 2.8683 -2.0791 15 1 10.9660 2.0139 -2.0133 16 6 9.3472 2.7043 -3.2551 17 1 9.9010 2.1087 -3.9809 18 6 9.2109 4.0982 -3.8802 19 6 10.5751 4.7462 -3.5558 20 7 11.0620 4.1084 -2.3256 21 6 12.0735 4.5835 -1.5341 22 1 12.2632 4.1321 -0.5715 23 6 12.8548 5.6452 -1.9689 24 7 12.7435 6.0809 -3.2060 25 14 14.0641 6.4558 -0.7986 26 1 15.4076 5.8488 -0.9763 27 1 14.1356 7.9103 -1.0896 28 1 13.6104 6.2527 0.6008 29 6 8.0497 1.9994 -3.0381 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.6887 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.4893 3.9484 -1.0258 36 1 2.6869 3.5643 0.5159 37 1 4.2939 4.3299 0.5155 38 1 6.0288 1.2653 0.5131 39 1 6.1693 3.0396 0.5138 40 1 7.9952 2.0997 0.3910 41 1 9.0157 0.9917 -0.5652 42 1 9.0267 4.0394 -0.7793 43 1 10.2518 3.0687 0.0683 44 1 8.3977 4.6539 -3.4133 45 1 9.0618 4.0295 -4.9578 46 1 10.4511 5.8174 -3.3969 47 1 11.2766 4.5689 -4.3709 48 1 13.2897 6.8225 -3.5099 49 1 7.2990 2.4516 -3.6861 50 1 8.1706 0.9568 -3.3324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753873926.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:06 Heat of formation + Delta-G solvation = -91.490853 kcal Electronic energy + Delta-G solvation = -30771.463497 eV Core-core repulsion = 26606.419465 eV Total energy + Delta-G solvation = -4165.044032 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.75191 -40.85960 -39.60093 -38.39835 -36.86576 -36.45905 -34.66225 -33.14244 -31.83870 -30.87211 -29.87369 -28.81279 -27.39984 -26.85142 -26.30804 -24.85956 -23.99119 -22.14956 -21.61578 -20.27127 -19.35164 -18.80207 -18.58482 -18.39049 -17.77662 -17.32457 -16.94280 -16.77215 -16.63239 -16.41912 -15.98060 -15.75782 -15.55580 -15.23813 -14.74656 -14.57229 -14.31642 -14.18362 -13.99809 -13.91278 -13.79955 -13.41801 -13.32535 -13.18566 -13.14277 -13.04300 -12.84186 -12.64452 -12.58877 -12.36204 -12.32784 -11.99802 -11.70914 -11.66148 -11.30575 -11.24716 -11.00292 -10.92419 -10.76145 -10.65693 -9.77055 -9.64915 -8.82347 -7.83196 -5.18197 1.35528 1.47732 1.48449 1.56278 1.57878 1.67739 2.11826 2.51181 2.96842 3.34586 3.43301 3.55414 3.62449 3.71833 3.79970 4.04060 4.06105 4.09879 4.17670 4.22935 4.28230 4.31374 4.34831 4.48202 4.51100 4.57820 4.58418 4.58710 4.68702 4.71605 4.76525 4.87504 4.88006 4.88851 4.94845 5.03773 5.14523 5.24597 5.36759 5.46645 5.56709 5.61803 5.66139 5.75832 5.99392 6.22398 6.27758 6.38649 7.02642 7.12148 7.13322 7.80801 8.46256 9.28216 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.002341 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.884316 B =11957.204314 C =12287.252424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.049 3.951 4 C 0.509 3.491 5 O -0.573 6.573 6 N -0.598 5.598 7 C 0.069 3.931 8 C 0.099 3.901 9 C 0.494 3.506 10 O -0.579 6.579 11 N -0.601 5.601 12 C 0.111 3.889 13 C -0.126 4.126 14 C 0.163 3.837 15 H 0.041 0.959 16 C -0.093 4.093 17 H 0.066 0.934 18 C -0.120 4.120 19 C 0.185 3.815 20 N -0.617 5.617 21 C -0.227 4.227 22 H 0.087 0.913 23 C -0.071 4.071 24 N -0.953 5.953 25 Si 0.974 3.026 26 H -0.290 1.290 27 H -0.299 1.299 28 H -0.263 1.263 29 C 0.143 3.857 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.147 0.853 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.014 0.986 47 H -0.001 1.001 48 H 0.244 0.756 49 H 0.073 0.927 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.185 -6.527 10.185 26.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.030 4.030 4 C 0.298 3.702 5 O -0.451 6.451 6 N -0.331 5.331 7 C -0.073 4.073 8 C -0.028 4.028 9 C 0.282 3.718 10 O -0.459 6.459 11 N -0.334 5.334 12 C -0.012 4.012 13 C -0.166 4.166 14 C 0.057 3.943 15 H 0.059 0.941 16 C -0.113 4.113 17 H 0.084 0.916 18 C -0.158 4.158 19 C 0.060 3.940 20 N -0.342 5.342 21 C -0.357 4.357 22 H 0.105 0.895 23 C -0.264 4.264 24 N -0.602 5.602 25 Si 0.803 3.197 26 H -0.218 1.218 27 H -0.226 1.226 28 H -0.188 1.188 29 C 0.020 3.980 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.135 0.865 39 H 0.165 0.835 40 H 0.133 0.867 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.033 0.967 47 H 0.017 0.983 48 H 0.053 0.947 49 H 0.092 0.908 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.069 -7.082 9.689 26.004 hybrid contribution 1.258 1.010 -0.352 1.651 sum -21.812 -6.072 9.337 24.491 Atomic orbital electron populations 1.23044 0.78151 1.04202 1.01718 1.87966 1.22303 1.26805 1.95784 1.22399 0.88813 0.86739 1.05034 1.21006 0.90521 0.83632 0.75066 1.90690 1.75652 1.28305 1.50483 1.47516 1.05186 1.07687 1.72731 1.22204 1.00408 0.81747 1.02917 1.21527 0.81291 1.07368 0.92581 1.21726 0.81678 0.75258 0.93110 1.90643 1.55776 1.51845 1.47636 1.47864 1.06137 1.71727 1.07677 1.21976 0.90255 0.99575 0.89344 1.22262 0.97713 0.98077 0.98547 1.20804 0.91147 0.88729 0.93580 0.94103 1.20611 0.95378 0.96970 0.98339 0.91559 1.22481 0.97437 0.95583 1.00305 1.20821 0.90556 0.94673 0.87953 1.45004 1.39018 1.23276 1.26878 1.19383 1.06305 1.12087 0.97887 0.89547 1.25674 1.01575 1.01384 0.97771 1.70198 1.44038 1.29501 1.16474 0.85122 0.78665 0.77008 0.78905 1.21781 1.22609 1.18792 1.20125 0.94412 0.99984 0.83526 0.92577 0.88781 0.91664 0.86336 0.88372 0.92839 0.87640 0.88507 0.86536 0.83537 0.86655 0.89564 0.93082 0.90952 0.92519 0.90218 0.96719 0.98281 0.94652 0.90836 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -8.81 10.24 -129.94 -1.33 -10.14 16 3 C 0.05 0.78 4.97 71.24 0.35 1.14 16 4 C 0.51 12.34 7.75 87.66 0.68 13.02 16 5 O -0.57 -19.73 16.08 16.01 0.26 -19.48 16 6 N -0.60 -11.43 2.36 -851.13 -2.01 -13.44 16 7 C 0.07 0.72 10.29 127.77 1.31 2.03 16 8 C 0.10 1.93 4.26 85.63 0.37 2.29 16 9 C 0.49 13.77 7.75 87.66 0.68 14.45 16 10 O -0.58 -20.52 15.88 -3.03 -0.05 -20.57 16 11 N -0.60 -16.12 3.00 -830.22 -2.49 -18.61 16 12 C 0.11 2.44 6.34 86.31 0.55 2.98 16 13 C -0.13 -3.82 5.19 30.77 0.16 -3.66 16 14 C 0.16 6.13 3.44 44.49 0.15 6.28 16 15 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 16 C -0.09 -3.13 2.45 -12.27 -0.03 -3.16 16 17 H 0.07 2.21 8.04 -2.39 -0.02 2.19 16 18 C -0.12 -4.50 6.36 31.22 0.20 -4.30 16 19 C 0.19 9.15 5.35 86.81 0.46 9.62 16 20 N -0.62 -30.23 3.04 -671.85 -2.04 -32.28 16 21 C -0.23 -12.14 9.80 84.03 0.82 -11.31 16 22 H 0.09 4.32 7.71 -2.91 -0.02 4.30 16 23 C -0.07 -3.98 5.42 84.86 0.46 -3.52 16 24 N -0.95 -57.29 10.58 21.65 0.23 -57.06 16 25 Si 0.97 44.86 29.56 68.60 2.03 46.89 16 26 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 28 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 29 C 0.14 4.22 5.95 85.34 0.51 4.72 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.09 0.93 8.14 -2.38 -0.02 0.92 16 32 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.12 0.90 7.40 -2.39 -0.02 0.88 16 34 H 0.10 1.22 8.11 -2.39 -0.02 1.20 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.11 0.40 6.44 -2.38 -0.02 0.38 16 37 H 0.10 0.67 7.89 -2.39 -0.02 0.65 16 38 H 0.12 2.29 7.19 -2.39 -0.02 2.27 16 39 H 0.15 1.79 7.45 -2.39 -0.02 1.77 16 40 H 0.12 1.73 5.90 -2.39 -0.01 1.71 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.07 2.19 7.98 -2.39 -0.02 2.17 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 46 H 0.01 0.81 7.36 -2.39 -0.02 0.79 16 47 H 0.00 -0.05 7.68 -2.39 -0.02 -0.07 16 48 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 49 H 0.07 2.35 6.81 -2.39 -0.02 2.33 16 50 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -84.28 394.07 3.44 -80.84 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.92 Total: 11.74 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: 7.92 Total: 32.10 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -6.31 Total: -121.38 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -1.12 Total: -50.18 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -84.28 3.44 -80.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753873926.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.653 kcal (2) G-P(sol) polarization free energy of solvation -84.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds