Wall clock time and date at job start Sat Apr 11 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00044 * 2 1 4 4 C 1.50706 * 109.47096 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00097 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00150 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99786 * 359.97438 * 6 4 3 8 8 C 1.46498 * 120.00299 * 179.97438 * 6 4 3 9 9 C 1.50698 * 109.46889 * 270.00072 * 8 6 4 10 10 O 1.21277 * 120.00292 * 359.97438 * 9 8 6 11 11 N 1.34785 * 119.99695 * 180.02562 * 9 8 6 12 12 C 1.46595 * 119.68504 * 359.72225 * 11 9 8 13 13 C 1.53530 * 110.82037 * 227.73460 * 12 11 9 14 14 C 1.51526 * 107.42359 * 309.22041 * 13 12 11 15 15 H 1.09002 * 108.81713 * 306.40732 * 14 13 12 16 16 C 1.55370 * 107.77804 * 64.71045 * 14 13 12 17 17 H 1.09004 * 111.50623 * 50.38132 * 16 14 13 18 18 C 1.53739 * 101.00270 * 168.70730 * 16 14 13 19 19 C 1.55289 * 101.84256 * 321.36819 * 18 16 14 20 20 N 1.46155 * 118.25849 * 181.89639 * 14 13 12 21 21 C 1.36933 * 125.88845 * 30.90755 * 20 14 13 22 22 H 1.07999 * 119.99787 * 354.02952 * 21 20 14 23 23 C 1.38808 * 120.00484 * 174.03172 * 21 20 14 24 24 N 1.31627 * 119.99998 * 5.75956 * 23 21 20 25 25 Si 1.86800 * 120.00447 * 185.75923 * 23 21 20 26 26 H 1.48506 * 109.47022 * 94.98510 * 25 23 21 27 27 H 1.48496 * 109.47525 * 214.98785 * 25 23 21 28 28 H 1.48501 * 109.46834 * 334.98943 * 25 23 21 29 29 C 1.47717 * 119.68144 * 179.97438 * 11 9 8 30 30 H 1.08998 * 109.47410 * 300.00976 * 1 2 3 31 31 H 1.09007 * 109.46642 * 60.00361 * 1 2 3 32 32 H 1.08998 * 109.47385 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47381 * 59.99510 * 3 2 1 34 34 H 1.08999 * 109.46897 * 299.99366 * 3 2 1 35 35 H 1.08999 * 109.47117 * 269.99893 * 7 6 4 36 36 H 1.09004 * 109.47566 * 30.00034 * 7 6 4 37 37 H 1.09000 * 109.47463 * 150.00225 * 7 6 4 38 38 H 1.09001 * 109.47134 * 149.99976 * 8 6 4 39 39 H 1.09004 * 109.46745 * 30.00114 * 8 6 4 40 40 H 1.09005 * 109.25607 * 348.10547 * 12 11 9 41 41 H 1.09001 * 109.25343 * 107.53182 * 12 11 9 42 42 H 1.09003 * 109.96522 * 189.66988 * 13 12 11 43 43 H 1.08999 * 109.78169 * 68.67314 * 13 12 11 44 44 H 1.08994 * 110.95778 * 79.50878 * 18 16 14 45 45 H 1.08997 * 110.95591 * 203.19440 * 18 16 14 46 46 H 1.08997 * 109.92062 * 141.83002 * 19 18 16 47 47 H 1.08998 * 109.92127 * 262.93094 * 19 18 16 48 48 H 0.96992 * 120.00149 * 180.02562 * 24 23 21 49 49 H 1.08995 * 110.06806 * 247.14705 * 29 11 9 50 50 H 1.08998 * 110.07468 * 8.62773 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2765 2.2967 0.0002 7 6 3.6465 3.6194 -0.0014 8 6 5.7369 2.1811 0.0014 9 6 6.2366 2.1427 1.4226 10 8 5.4503 2.2061 2.3438 11 7 7.5575 2.0388 1.6700 12 6 8.5014 1.9575 0.5513 13 6 9.5029 0.8135 0.7643 14 6 10.0865 0.9742 2.1534 15 1 10.4845 1.9841 2.2529 16 6 8.9351 0.7756 3.1776 17 1 8.3772 -0.1396 2.9792 18 6 9.7259 0.6740 4.4921 19 6 10.9684 -0.1480 4.0537 20 7 11.1083 0.0243 2.5889 21 6 12.0169 -0.6042 1.7798 22 1 11.9565 -0.4880 0.7078 23 6 13.0156 -1.3907 2.3375 24 7 13.0226 -1.6249 3.6327 25 14 14.3495 -2.1167 1.2499 26 1 15.5367 -1.2246 1.2603 27 1 14.7324 -3.4564 1.7635 28 1 13.8399 -2.2461 -0.1389 29 6 8.0396 2.0023 3.0658 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.4910 3.9465 -1.0295 36 1 2.6863 3.5652 0.5118 37 1 4.2933 4.3306 0.5122 38 1 6.1698 3.0392 -0.5129 39 1 6.0292 1.2647 -0.5114 40 1 7.9497 1.7836 -0.3726 41 1 9.0466 2.8980 0.4720 42 1 10.2970 0.8705 0.0198 43 1 8.9900 -0.1451 0.6863 44 1 10.0180 1.6617 4.8487 45 1 9.1534 0.1412 5.2513 46 1 11.8587 0.2270 4.5584 47 1 10.8210 -1.2008 4.2945 48 1 13.7206 -2.1742 4.0224 49 1 8.6104 2.9039 3.2880 50 1 7.1962 1.9155 3.7508 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753873929.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:18 Heat of formation + Delta-G solvation = -65.093274 kcal Electronic energy + Delta-G solvation = -30728.759579 eV Core-core repulsion = 26564.860232 eV Total energy + Delta-G solvation = -4163.899347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.68147 -39.74157 -38.26091 -37.58912 -35.67025 -35.31895 -32.73698 -31.57026 -30.74073 -29.49994 -28.51183 -27.77973 -26.73667 -25.64306 -24.78734 -23.29999 -22.38738 -20.49773 -20.01108 -19.52232 -18.80627 -17.70425 -17.45215 -16.97960 -16.59393 -16.27085 -16.04357 -15.47570 -15.22188 -15.05547 -14.76969 -14.51062 -14.27366 -13.89262 -13.66821 -13.45863 -13.25479 -13.20423 -12.87403 -12.73045 -12.65764 -12.52181 -12.41812 -12.08310 -11.76855 -11.63884 -11.48960 -11.39776 -10.81829 -10.80398 -10.70439 -10.18637 -10.14846 -10.09281 -10.02268 -9.93929 -9.83192 -9.62639 -9.46166 -8.89220 -8.59112 -8.51450 -6.80931 -5.70965 -3.03298 2.22957 2.44357 2.64442 3.12864 3.40960 3.45787 3.48228 3.58014 4.25507 4.45404 4.50834 4.60922 4.70245 4.81461 4.83987 4.94390 4.95450 4.99614 5.05327 5.09939 5.21955 5.26012 5.30021 5.32491 5.35328 5.51971 5.56617 5.61586 5.80840 5.88625 5.96030 6.04146 6.16380 6.19057 6.24102 6.36427 6.49846 6.60508 6.62810 6.65446 6.84274 7.00963 7.08455 7.45891 7.57609 7.62866 7.82372 7.92653 8.21031 8.25690 9.20924 9.84215 10.52378 11.42251 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017924 B = 0.002452 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.745847 B =11416.814413 C =11763.839576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.519 3.481 5 O -0.510 6.510 6 N -0.602 5.602 7 C 0.080 3.920 8 C 0.098 3.902 9 C 0.497 3.503 10 O -0.540 6.540 11 N -0.605 5.605 12 C 0.111 3.889 13 C -0.132 4.132 14 C 0.167 3.833 15 H 0.021 0.979 16 C -0.124 4.124 17 H 0.078 0.922 18 C -0.135 4.135 19 C 0.179 3.821 20 N -0.595 5.595 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.920 5.920 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.281 1.281 29 C 0.127 3.873 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.043 0.957 47 H 0.047 0.953 48 H 0.252 0.748 49 H 0.068 0.932 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.822 13.849 -8.603 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.031 4.031 4 C 0.306 3.694 5 O -0.383 6.383 6 N -0.337 5.337 7 C -0.063 4.063 8 C -0.028 4.028 9 C 0.283 3.717 10 O -0.418 6.418 11 N -0.339 5.339 12 C -0.012 4.012 13 C -0.171 4.171 14 C 0.059 3.941 15 H 0.039 0.961 16 C -0.144 4.144 17 H 0.097 0.903 18 C -0.174 4.174 19 C 0.055 3.945 20 N -0.320 5.320 21 C -0.355 4.355 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.567 5.567 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 C 0.006 3.994 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.087 0.913 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.647 12.955 -8.093 26.494 hybrid contribution 0.659 -0.128 -0.493 0.833 sum -20.988 12.826 -8.586 26.053 Atomic orbital electron populations 1.22843 0.80308 1.03431 1.00053 1.88036 1.19827 1.25171 1.95389 1.22237 0.91428 0.87017 1.02462 1.20240 0.88805 0.84081 0.76320 1.90767 1.74345 1.26112 1.47101 1.47321 1.05270 1.06617 1.74490 1.21849 0.99070 0.83658 1.01698 1.21404 0.80666 1.05677 0.95085 1.21070 0.82311 0.76464 0.91855 1.90661 1.54785 1.50174 1.46135 1.48342 1.05684 1.72005 1.07883 1.21729 0.91637 0.99813 0.88041 1.21818 0.97739 0.97738 0.99815 1.20733 0.88319 0.93646 0.91431 0.96140 1.22639 0.96332 0.97299 0.98163 0.90337 1.22695 0.98557 1.00577 0.95596 1.21501 0.92279 0.97337 0.83379 1.44406 1.34786 1.49110 1.03662 1.19014 1.03967 1.23208 0.89318 0.90394 1.24813 0.99029 1.00587 0.95994 1.69953 1.34732 1.42419 1.09630 0.86143 0.82250 0.78249 0.79395 1.21683 1.21825 1.20661 1.21620 0.98237 0.98122 0.81466 0.93759 0.93835 0.89000 0.90016 0.90237 0.92068 0.90929 0.90576 0.87277 0.86600 0.90421 0.91387 0.90318 0.91318 0.92308 0.92072 0.93832 0.93435 0.93771 0.91336 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.37 -4.35 10.24 -55.14 -0.56 -4.92 16 3 C 0.05 0.45 4.97 36.01 0.18 0.63 16 4 C 0.52 6.83 7.75 -10.98 -0.09 6.74 16 5 O -0.51 -9.29 16.08 -14.35 -0.23 -9.52 16 6 N -0.60 -6.32 2.36 -182.95 -0.43 -6.75 16 7 C 0.08 0.48 10.24 59.85 0.61 1.09 16 8 C 0.10 1.06 4.22 -5.20 -0.02 1.04 16 9 C 0.50 7.22 7.74 -10.98 -0.08 7.14 16 10 O -0.54 -9.64 15.79 5.56 0.09 -9.55 16 11 N -0.61 -8.67 3.00 -172.73 -0.52 -9.19 16 12 C 0.11 1.38 6.18 -3.71 -0.02 1.36 16 13 C -0.13 -2.20 5.50 -27.20 -0.15 -2.35 16 14 C 0.17 3.32 2.61 -67.61 -0.18 3.15 16 15 H 0.02 0.42 7.92 -51.93 -0.41 0.01 16 16 C -0.12 -2.27 2.81 -89.34 -0.25 -2.53 16 17 H 0.08 1.60 8.11 -51.93 -0.42 1.18 16 18 C -0.14 -2.57 6.56 -25.13 -0.16 -2.74 16 19 C 0.18 4.38 5.45 -1.92 -0.01 4.37 16 20 N -0.59 -14.94 3.37 -162.59 -0.55 -15.49 16 21 C -0.23 -6.20 9.91 -15.06 -0.15 -6.35 16 22 H 0.08 2.04 7.23 -52.49 -0.38 1.66 16 23 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 24 N -0.92 -27.18 10.49 55.49 0.58 -26.59 16 25 Si 0.91 22.11 29.56 -169.99 -5.02 17.08 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.13 1.99 5.96 -3.74 -0.02 1.96 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.61 7.40 -51.93 -0.38 0.22 16 34 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.07 0.34 6.44 -51.93 -0.33 0.01 16 37 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 38 H 0.11 0.75 7.93 -51.93 -0.41 0.34 16 39 H 0.12 1.36 6.81 -51.93 -0.35 1.00 16 40 H 0.08 0.75 5.84 -51.93 -0.30 0.45 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.30 7.68 -51.93 -0.40 0.90 16 43 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 44 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.04 1.16 7.58 -51.93 -0.39 0.77 16 47 H 0.05 1.29 7.46 -51.93 -0.39 0.91 16 48 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 50 H 0.09 1.44 6.99 -51.93 -0.36 1.08 16 LS Contribution 393.63 15.07 5.93 5.93 Total: -1.00 -37.73 393.63 -8.36 -46.10 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -8.32 Total: -1.62 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 0.67 Total: 14.52 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.92 Total: -58.02 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.71 Total: -23.98 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.73 -8.36 -46.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753873929.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.998 kcal (2) G-P(sol) polarization free energy of solvation -37.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds