Wall clock time and date at job start Sat Apr 11 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00044 * 2 1 4 4 C 1.50706 * 109.47096 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00097 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00150 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99786 * 359.97438 * 6 4 3 8 8 C 1.46498 * 120.00299 * 179.97438 * 6 4 3 9 9 C 1.50698 * 109.46889 * 270.00072 * 8 6 4 10 10 O 1.21277 * 120.00292 * 359.97438 * 9 8 6 11 11 N 1.34785 * 119.99695 * 180.02562 * 9 8 6 12 12 C 1.46595 * 119.68504 * 359.72225 * 11 9 8 13 13 C 1.53530 * 110.82037 * 227.73460 * 12 11 9 14 14 C 1.51526 * 107.42359 * 309.22041 * 13 12 11 15 15 H 1.09002 * 108.81713 * 306.40732 * 14 13 12 16 16 C 1.55370 * 107.77804 * 64.71045 * 14 13 12 17 17 H 1.09004 * 111.50623 * 50.38132 * 16 14 13 18 18 C 1.53739 * 101.00270 * 168.70730 * 16 14 13 19 19 C 1.55289 * 101.84256 * 321.36819 * 18 16 14 20 20 N 1.46155 * 118.25849 * 181.89639 * 14 13 12 21 21 C 1.36933 * 125.88845 * 30.90755 * 20 14 13 22 22 H 1.07999 * 119.99787 * 354.02952 * 21 20 14 23 23 C 1.38808 * 120.00484 * 174.03172 * 21 20 14 24 24 N 1.31627 * 119.99998 * 5.75956 * 23 21 20 25 25 Si 1.86800 * 120.00447 * 185.75923 * 23 21 20 26 26 H 1.48506 * 109.47022 * 94.98510 * 25 23 21 27 27 H 1.48496 * 109.47525 * 214.98785 * 25 23 21 28 28 H 1.48501 * 109.46834 * 334.98943 * 25 23 21 29 29 C 1.47717 * 119.68144 * 179.97438 * 11 9 8 30 30 H 1.08998 * 109.47410 * 300.00976 * 1 2 3 31 31 H 1.09007 * 109.46642 * 60.00361 * 1 2 3 32 32 H 1.08998 * 109.47385 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47381 * 59.99510 * 3 2 1 34 34 H 1.08999 * 109.46897 * 299.99366 * 3 2 1 35 35 H 1.08999 * 109.47117 * 269.99893 * 7 6 4 36 36 H 1.09004 * 109.47566 * 30.00034 * 7 6 4 37 37 H 1.09000 * 109.47463 * 150.00225 * 7 6 4 38 38 H 1.09001 * 109.47134 * 149.99976 * 8 6 4 39 39 H 1.09004 * 109.46745 * 30.00114 * 8 6 4 40 40 H 1.09005 * 109.25607 * 348.10547 * 12 11 9 41 41 H 1.09001 * 109.25343 * 107.53182 * 12 11 9 42 42 H 1.09003 * 109.96522 * 189.66988 * 13 12 11 43 43 H 1.08999 * 109.78169 * 68.67314 * 13 12 11 44 44 H 1.08994 * 110.95778 * 79.50878 * 18 16 14 45 45 H 1.08997 * 110.95591 * 203.19440 * 18 16 14 46 46 H 1.08997 * 109.92062 * 141.83002 * 19 18 16 47 47 H 1.08998 * 109.92127 * 262.93094 * 19 18 16 48 48 H 0.96992 * 120.00149 * 180.02562 * 24 23 21 49 49 H 1.08995 * 110.06806 * 247.14705 * 29 11 9 50 50 H 1.08998 * 110.07468 * 8.62773 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2765 2.2967 0.0002 7 6 3.6465 3.6194 -0.0014 8 6 5.7369 2.1811 0.0014 9 6 6.2366 2.1427 1.4226 10 8 5.4503 2.2061 2.3438 11 7 7.5575 2.0388 1.6700 12 6 8.5014 1.9575 0.5513 13 6 9.5029 0.8135 0.7643 14 6 10.0865 0.9742 2.1534 15 1 10.4845 1.9841 2.2529 16 6 8.9351 0.7756 3.1776 17 1 8.3772 -0.1396 2.9792 18 6 9.7259 0.6740 4.4921 19 6 10.9684 -0.1480 4.0537 20 7 11.1083 0.0243 2.5889 21 6 12.0169 -0.6042 1.7798 22 1 11.9565 -0.4880 0.7078 23 6 13.0156 -1.3907 2.3375 24 7 13.0226 -1.6249 3.6327 25 14 14.3495 -2.1167 1.2499 26 1 15.5367 -1.2246 1.2603 27 1 14.7324 -3.4564 1.7635 28 1 13.8399 -2.2461 -0.1389 29 6 8.0396 2.0023 3.0658 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.4910 3.9465 -1.0295 36 1 2.6863 3.5652 0.5118 37 1 4.2933 4.3306 0.5122 38 1 6.1698 3.0392 -0.5129 39 1 6.0292 1.2647 -0.5114 40 1 7.9497 1.7836 -0.3726 41 1 9.0466 2.8980 0.4720 42 1 10.2970 0.8705 0.0198 43 1 8.9900 -0.1451 0.6863 44 1 10.0180 1.6617 4.8487 45 1 9.1534 0.1412 5.2513 46 1 11.8587 0.2270 4.5584 47 1 10.8210 -1.2008 4.2945 48 1 13.7206 -2.1742 4.0224 49 1 8.6104 2.9039 3.2880 50 1 7.1962 1.9155 3.7508 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753873929.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:17 Heat of formation + Delta-G solvation = -91.799403 kcal Electronic energy + Delta-G solvation = -30729.917644 eV Core-core repulsion = 26564.860232 eV Total energy + Delta-G solvation = -4165.057412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.74390 -40.85305 -39.58633 -38.40884 -36.86418 -36.47216 -34.57477 -33.04532 -31.93467 -30.86689 -29.79341 -28.71272 -27.36907 -26.71955 -26.29895 -24.70534 -23.78525 -21.94061 -21.53838 -20.79839 -19.89133 -18.78587 -18.48699 -18.06230 -17.73605 -17.26208 -17.04698 -16.85063 -16.49940 -16.26632 -15.97402 -15.70303 -15.55520 -15.27125 -14.96480 -14.76715 -14.24413 -14.15382 -13.97716 -13.87400 -13.77018 -13.42409 -13.29693 -13.23271 -13.14069 -13.11188 -12.86813 -12.68301 -12.48843 -12.33869 -12.10223 -12.00367 -11.80843 -11.63803 -11.52675 -11.14928 -10.98514 -10.92737 -10.77236 -10.70330 -9.75894 -9.70522 -8.86659 -7.84590 -5.18327 1.34498 1.45530 1.47314 1.55525 1.56113 1.66738 2.09062 2.50461 2.97451 3.34608 3.37885 3.54093 3.56556 3.83934 3.86876 3.97981 4.06750 4.16538 4.17897 4.20140 4.21876 4.30768 4.34187 4.38483 4.49155 4.49704 4.56838 4.63737 4.69755 4.76195 4.79528 4.81453 4.86142 4.90509 4.94805 5.01504 5.05141 5.19997 5.28653 5.46295 5.52861 5.55015 5.64739 5.73926 5.99183 6.19985 6.28455 6.35661 7.03240 7.08947 7.12445 7.79059 8.47750 9.28262 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017924 B = 0.002452 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.745847 B =11416.814413 C =11763.839576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.050 3.950 4 C 0.505 3.495 5 O -0.578 6.578 6 N -0.598 5.598 7 C 0.071 3.929 8 C 0.097 3.903 9 C 0.493 3.507 10 O -0.579 6.579 11 N -0.608 5.608 12 C 0.118 3.882 13 C -0.128 4.128 14 C 0.157 3.843 15 H 0.032 0.968 16 C -0.112 4.112 17 H 0.049 0.951 18 C -0.121 4.121 19 C 0.184 3.816 20 N -0.617 5.617 21 C -0.230 4.230 22 H 0.089 0.911 23 C -0.073 4.073 24 N -0.955 5.955 25 Si 0.975 3.025 26 H -0.286 1.286 27 H -0.301 1.301 28 H -0.265 1.265 29 C 0.137 3.863 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.159 0.841 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.012 0.988 47 H 0.005 0.995 48 H 0.244 0.756 49 H 0.091 0.909 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.604 17.139 -11.073 31.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.029 4.029 4 C 0.294 3.706 5 O -0.457 6.457 6 N -0.332 5.332 7 C -0.070 4.070 8 C -0.029 4.029 9 C 0.281 3.719 10 O -0.458 6.458 11 N -0.341 5.341 12 C -0.005 4.005 13 C -0.167 4.167 14 C 0.051 3.949 15 H 0.049 0.951 16 C -0.132 4.132 17 H 0.068 0.932 18 C -0.160 4.160 19 C 0.059 3.941 20 N -0.342 5.342 21 C -0.359 4.359 22 H 0.107 0.893 23 C -0.265 4.265 24 N -0.605 5.605 25 Si 0.804 3.196 26 H -0.213 1.213 27 H -0.228 1.228 28 H -0.189 1.189 29 C 0.014 3.986 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.176 0.824 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.030 0.970 47 H 0.023 0.977 48 H 0.054 0.946 49 H 0.109 0.891 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.468 16.330 -10.610 30.495 hybrid contribution 1.162 -1.121 0.293 1.641 sum -22.306 15.209 -10.317 28.902 Atomic orbital electron populations 1.23039 0.78122 1.04123 1.01797 1.87977 1.22365 1.27026 1.95789 1.22407 0.88684 0.86645 1.05123 1.21103 0.90673 0.83737 0.75132 1.90727 1.75733 1.28671 1.50521 1.47532 1.05150 1.07733 1.72748 1.22199 0.99411 0.81216 1.04149 1.21556 0.81404 1.07328 0.92585 1.21777 0.81810 0.75228 0.93108 1.90642 1.55620 1.51889 1.47686 1.48422 1.06241 1.71763 1.07663 1.21851 0.90910 0.99128 0.88587 1.21771 0.98607 0.98612 0.97693 1.21006 0.87479 0.92565 0.93862 0.95082 1.22466 0.96023 0.97674 0.97036 0.93226 1.22566 0.96141 1.00905 0.96359 1.21259 0.93505 0.95668 0.83626 1.44719 1.35838 1.49762 1.03871 1.19453 1.03931 1.22317 0.90182 0.89345 1.25679 1.01574 1.01957 0.97312 1.70183 1.35283 1.43596 1.11397 0.85094 0.79413 0.76751 0.78336 1.21346 1.22786 1.18945 1.21440 0.97370 0.97127 0.82642 0.92448 0.91533 0.89026 0.88109 0.86264 0.88710 0.89656 0.90219 0.82369 0.87589 0.87008 0.88362 0.89956 0.93773 0.89849 0.90921 0.96976 0.97665 0.94636 0.89137 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -9.49 10.24 -129.94 -1.33 -10.82 16 3 C 0.05 0.83 4.97 71.24 0.35 1.18 16 4 C 0.50 12.73 7.75 87.66 0.68 13.41 16 5 O -0.58 -21.54 16.08 16.00 0.26 -21.29 16 6 N -0.60 -10.94 2.36 -851.11 -2.01 -12.95 16 7 C 0.07 0.55 10.24 127.77 1.31 1.86 16 8 C 0.10 1.82 4.22 85.63 0.36 2.18 16 9 C 0.49 13.31 7.74 87.65 0.68 13.98 16 10 O -0.58 -20.01 15.79 -3.02 -0.05 -20.06 16 11 N -0.61 -15.94 3.00 -818.77 -2.46 -18.40 16 12 C 0.12 2.52 6.18 86.54 0.53 3.05 16 13 C -0.13 -4.08 5.50 30.29 0.17 -3.92 16 14 C 0.16 6.17 2.61 45.39 0.12 6.29 16 15 H 0.03 1.20 7.92 -2.39 -0.02 1.18 16 16 C -0.11 -4.08 2.81 -9.97 -0.03 -4.11 16 17 H 0.05 2.09 8.11 -2.39 -0.02 2.07 16 18 C -0.12 -4.63 6.56 31.63 0.21 -4.42 16 19 C 0.18 9.43 5.45 86.85 0.47 9.91 16 20 N -0.62 -31.74 3.37 -668.32 -2.25 -33.99 16 21 C -0.23 -12.78 9.91 84.03 0.83 -11.94 16 22 H 0.09 4.60 7.23 -2.91 -0.02 4.58 16 23 C -0.07 -4.21 5.49 84.86 0.47 -3.74 16 24 N -0.96 -59.10 10.49 21.65 0.23 -58.87 16 25 Si 0.98 46.39 29.56 68.60 2.03 48.42 16 26 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 27 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 28 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 29 C 0.14 4.02 5.96 85.91 0.51 4.54 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 1.23 7.40 -2.39 -0.02 1.21 16 34 H 0.12 0.94 8.11 -2.39 -0.02 0.92 16 35 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.08 0.46 6.44 -2.38 -0.02 0.44 16 37 H 0.08 0.61 8.07 -2.39 -0.02 0.59 16 38 H 0.16 1.34 7.93 -2.39 -0.02 1.32 16 39 H 0.11 2.27 6.81 -2.39 -0.02 2.26 16 40 H 0.11 1.69 5.84 -2.38 -0.01 1.68 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.08 2.57 7.68 -2.39 -0.02 2.55 16 43 H 0.04 1.61 8.11 -2.39 -0.02 1.59 16 44 H 0.08 2.80 8.11 -2.39 -0.02 2.78 16 45 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.01 0.68 7.58 -2.39 -0.02 0.66 16 47 H 0.01 0.29 7.46 -2.39 -0.02 0.28 16 48 H 0.24 14.77 8.31 -92.71 -0.77 14.00 16 49 H 0.09 2.31 8.08 -2.39 -0.02 2.29 16 50 H 0.08 2.51 6.99 -2.39 -0.02 2.50 16 Total: -1.00 -89.81 393.63 3.25 -86.56 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.92 Total: 11.59 kcal Atomic # 6 Polarization: 21.91 SS G_CDS: 7.91 Total: 29.82 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -6.50 Total: -124.22 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -1.12 Total: -52.16 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -89.81 3.25 -86.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753873929.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.241 kcal (2) G-P(sol) polarization free energy of solvation -89.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds