Wall clock time and date at job start Sat Apr 11 2020 05:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34782 * 120.00066 * 2 1 4 4 O 1.21285 * 119.99633 * 185.62439 * 3 2 1 5 5 C 1.50693 * 120.00201 * 5.62235 * 3 2 1 6 6 H 1.08999 * 108.94218 * 42.44212 * 5 3 2 7 7 C 1.46284 * 108.96600 * 161.20700 * 5 3 2 8 8 C 1.54190 * 112.07838 * 181.56178 * 7 5 3 9 9 C 1.50410 * 108.77284 * 282.18763 * 8 7 5 10 10 O 1.44187 * 112.77446 * 92.57437 * 9 8 7 11 11 C 1.44190 * 116.92684 * 318.48392 * 10 9 8 12 12 C 1.50412 * 112.78128 * 318.47255 * 11 10 9 13 13 C 1.46505 * 120.00127 * 180.02562 * 2 1 3 14 14 C 1.53938 * 113.72775 * 305.24360 * 13 2 1 15 15 N 1.47962 * 86.29943 * 138.02133 * 14 13 2 16 16 C 1.46898 * 111.00106 * 222.46438 * 15 14 13 17 17 C 1.50700 * 109.47361 * 169.99958 * 16 15 14 18 18 O 1.21288 * 119.99781 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00136 * 180.02562 * 17 16 15 20 20 C 1.37091 * 120.00105 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00138 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00081 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00101 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00348 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47542 * 89.99534 * 24 22 20 26 26 H 1.48493 * 109.47542 * 210.00300 * 24 22 20 27 27 H 1.48503 * 109.46714 * 329.99925 * 24 22 20 28 28 C 1.48179 * 90.67621 * 335.40537 * 15 14 13 29 29 H 1.08992 * 109.47366 * 205.32761 * 1 2 3 30 30 H 1.09009 * 109.47138 * 325.32879 * 1 2 3 31 31 H 1.09001 * 109.47167 * 85.32079 * 1 2 3 32 32 H 1.08999 * 108.95971 * 302.23533 * 7 5 3 33 33 H 1.09001 * 108.95754 * 60.97516 * 7 5 3 34 34 H 1.09003 * 109.59138 * 41.97853 * 8 7 5 35 35 H 1.09008 * 109.58860 * 162.26208 * 8 7 5 36 36 H 1.08993 * 108.83074 * 213.42606 * 9 8 7 37 37 H 1.09007 * 108.82419 * 331.84162 * 9 8 7 38 38 H 1.09001 * 108.82091 * 79.32397 * 11 10 9 39 39 H 1.08999 * 108.81993 * 197.62168 * 11 10 9 40 40 H 1.09007 * 109.58245 * 332.78671 * 12 11 10 41 41 H 1.08994 * 109.58893 * 212.36578 * 12 11 10 42 42 H 1.08994 * 113.01094 * 173.60679 * 13 2 1 43 43 H 1.09005 * 113.75422 * 252.38821 * 14 13 2 44 44 H 1.08998 * 113.76472 * 23.65058 * 14 13 2 45 45 H 1.08997 * 109.47412 * 290.00787 * 16 15 14 46 46 H 1.09007 * 109.46503 * 50.00618 * 16 15 14 47 47 H 0.97008 * 119.99949 * 359.97438 * 19 17 16 48 48 H 0.97006 * 120.00540 * 180.02562 * 23 22 20 49 49 H 1.09002 * 113.66281 * 270.26926 * 28 15 14 50 50 H 1.09006 * 113.92703 * 138.95033 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3473 1.1697 -0.1029 5 6 1.3909 2.4692 0.1279 6 1 0.6170 2.3595 0.8875 7 6 2.3242 3.5145 0.5476 8 6 1.6235 4.8746 0.7385 9 6 1.3884 5.4918 -0.6129 10 8 0.0927 5.1683 -1.1565 11 6 -0.3648 3.8110 -0.9903 12 6 0.7222 2.7976 -1.2223 13 6 2.1975 -1.2688 -0.0006 14 6 1.8030 -2.2123 1.1500 15 7 1.8521 -3.2995 0.1475 16 6 0.7171 -4.2177 0.3105 17 6 0.6603 -5.1598 -0.8643 18 8 1.4845 -5.0749 -1.7501 19 7 -0.3064 -6.0965 -0.9308 20 6 -0.3584 -6.9532 -1.9998 21 1 0.3750 -6.8772 -2.7890 22 6 -1.3547 -7.9194 -2.0680 23 7 -1.4043 -8.7409 -3.0925 24 14 -2.6237 -8.0505 -0.7036 25 1 -3.7866 -7.1845 -1.0241 26 1 -3.0749 -9.4599 -0.5809 27 1 -2.0182 -7.6113 0.5793 28 6 1.5998 -2.3288 -0.9433 29 1 -0.3634 -0.9288 0.4396 30 1 -0.3634 0.8452 0.5846 31 1 -0.3633 0.0838 -1.0242 32 1 2.7867 3.2190 1.4893 33 1 3.1008 3.6207 -0.2099 34 1 0.6690 4.7263 1.2436 35 1 2.2556 5.5306 1.3371 36 1 1.4720 6.5749 -0.5243 37 1 2.1554 5.1355 -1.3006 38 1 -0.7475 3.6905 0.0232 39 1 -1.1756 3.6245 -1.6945 40 1 1.4642 3.2079 -1.9073 41 1 0.2917 1.8908 -1.6470 42 1 3.2739 -1.1392 -0.1122 43 1 2.5619 -2.2976 1.9277 44 1 0.8053 -2.0267 1.5478 45 1 0.8420 -4.7901 1.2296 46 1 -0.2089 -3.6450 0.3621 47 1 -0.9654 -6.1646 -0.2221 48 1 -2.1000 -9.4152 -3.1404 49 1 0.5420 -2.1783 -1.1591 50 1 2.1954 -2.5056 -1.8390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754574660.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:45 Heat of formation + Delta-G solvation = -65.817641 kcal Electronic energy + Delta-G solvation = -30259.454129 eV Core-core repulsion = 26095.523371 eV Total energy + Delta-G solvation = -4163.930758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.26348 -40.08467 -38.73585 -37.86862 -35.32478 -35.01844 -33.97800 -32.80636 -31.73731 -30.23580 -28.23880 -27.31769 -26.35682 -26.11820 -25.37439 -23.64074 -21.91217 -21.00583 -20.07009 -19.45493 -19.14666 -18.40771 -17.80426 -17.05427 -17.01886 -16.30211 -16.04516 -16.02047 -15.43124 -15.02055 -14.91820 -14.50450 -14.35356 -14.19917 -13.85330 -13.69402 -13.58127 -13.32692 -13.09089 -12.90440 -12.86747 -12.69867 -12.56233 -12.34818 -12.19516 -11.96215 -11.83770 -11.71429 -11.31795 -11.25119 -11.23428 -11.07988 -10.88368 -10.71561 -10.63915 -10.01416 -9.95041 -9.88133 -9.61268 -8.89039 -8.84580 -8.43145 -8.22152 -6.34757 -3.86470 2.29945 2.60526 2.98372 3.01873 3.11201 3.35406 3.67251 3.87067 4.03349 4.06214 4.12521 4.24131 4.37598 4.43393 4.54079 4.58824 4.61085 4.74113 4.76749 4.91161 4.94801 5.06169 5.07245 5.11888 5.17166 5.18131 5.26117 5.30792 5.32150 5.40230 5.45186 5.53117 5.56318 5.58456 5.61432 5.63851 5.73368 5.81883 5.87767 5.89615 6.08900 6.24489 6.42284 6.80230 6.96905 7.10201 7.53447 7.88351 8.09725 8.55401 8.90989 9.37842 9.77949 10.78282 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.002128 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.433563 B =13153.578046 C =13738.895282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.605 5.605 3 C 0.518 3.482 4 O -0.535 6.535 5 C -0.103 4.103 6 H 0.094 0.906 7 C -0.112 4.112 8 C -0.152 4.152 9 C 0.060 3.940 10 O -0.394 6.394 11 C 0.066 3.934 12 C -0.148 4.148 13 C 0.113 3.887 14 C -0.014 4.014 15 N -0.448 5.448 16 C 0.011 3.989 17 C 0.451 3.549 18 O -0.559 6.559 19 N -0.590 5.590 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.270 1.270 28 C 0.012 3.988 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.130 0.870 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.053 0.947 47 H 0.370 0.630 48 H 0.274 0.726 49 H 0.071 0.929 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 26.916 11.777 29.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.338 5.338 3 C 0.306 3.694 4 O -0.411 6.411 5 C -0.124 4.124 6 H 0.112 0.888 7 C -0.150 4.150 8 C -0.189 4.189 9 C -0.016 4.016 10 O -0.314 6.314 11 C -0.010 4.010 12 C -0.186 4.186 13 C 0.009 3.991 14 C -0.144 4.144 15 N -0.171 5.171 16 C -0.121 4.121 17 C 0.237 3.763 18 O -0.440 6.440 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.118 4.118 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.148 0.852 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.112 0.888 46 H 0.071 0.929 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.089 0.911 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.848 26.446 10.877 28.608 hybrid contribution -1.936 -0.370 1.322 2.373 sum -1.088 26.076 12.199 28.809 Atomic orbital electron populations 1.21911 0.79630 1.03386 1.02336 1.47911 1.06867 1.05851 1.73170 1.20705 0.87889 0.85160 0.75643 1.90707 1.14311 1.87160 1.48902 1.20486 0.99276 0.93256 0.99359 0.88824 1.20526 0.98070 0.93299 1.03091 1.21927 1.01886 0.96970 0.98160 1.22356 0.85280 1.00136 0.93802 1.88272 1.35428 1.27842 1.79860 1.22268 0.95835 0.81421 1.01482 1.22000 0.99530 1.00881 0.96198 1.23244 0.99073 0.80674 0.96140 1.24516 1.01621 0.91330 0.96888 1.68419 1.37119 1.08568 1.02957 1.22483 0.93060 0.96752 0.99843 1.19553 0.84142 0.84141 0.88504 1.90575 1.40395 1.72597 1.40452 1.42210 1.27332 1.31286 1.22193 1.19422 1.14334 1.09604 0.99986 0.86277 1.25046 0.97833 0.96136 0.97186 1.69621 1.34018 1.19189 1.29186 0.86670 0.82115 0.78836 0.81747 1.19670 1.20117 1.19520 1.24314 1.00685 0.89350 0.97421 0.90691 0.90787 0.91855 0.91130 0.90421 0.90704 0.90001 0.89476 0.92861 0.92972 0.88997 0.89742 0.89534 0.85220 0.88741 0.91104 0.88842 0.92860 0.79757 0.91578 0.91093 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 7.99 59.84 0.48 0.95 16 2 N -0.61 -5.99 3.10 -175.00 -0.54 -6.53 16 3 C 0.52 5.57 6.75 -10.99 -0.07 5.50 16 4 O -0.53 -7.84 15.39 5.55 0.09 -7.75 16 5 C -0.10 -0.75 1.33 -94.34 -0.13 -0.87 16 6 H 0.09 0.52 6.02 -51.93 -0.31 0.20 16 7 C -0.11 -0.83 3.99 -29.30 -0.12 -0.94 16 8 C -0.15 -0.85 5.61 -27.40 -0.15 -1.01 16 9 C 0.06 0.39 6.27 35.87 0.22 0.62 16 10 O -0.39 -3.30 10.88 -35.23 -0.38 -3.68 16 11 C 0.07 0.41 6.26 35.87 0.22 0.64 16 12 C -0.15 -1.00 4.74 -27.39 -0.13 -1.13 16 13 C 0.11 1.37 4.43 -69.31 -0.31 1.07 16 14 C -0.01 -0.15 7.46 -2.76 -0.02 -0.18 16 15 N -0.45 -6.98 5.95 -238.92 -1.42 -8.40 16 16 C 0.01 0.18 5.31 -4.98 -0.03 0.15 16 17 C 0.45 10.08 7.59 -10.99 -0.08 9.99 16 18 O -0.56 -14.87 15.14 5.55 0.08 -14.79 16 19 N -0.59 -13.82 5.09 -10.97 -0.06 -13.88 16 20 C -0.30 -8.53 10.16 -14.94 -0.15 -8.68 16 21 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.51 13.96 55.50 0.77 -24.73 16 24 Si 0.88 19.01 27.74 -169.99 -4.71 14.29 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 27 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 28 C 0.01 0.17 6.23 -2.64 -0.02 0.16 16 29 H 0.07 0.51 6.14 -51.93 -0.32 0.19 16 30 H 0.07 0.33 6.14 -51.92 -0.32 0.01 16 31 H 0.06 0.40 7.20 -51.93 -0.37 0.03 16 32 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 33 H 0.08 0.69 7.23 -51.93 -0.38 0.31 16 34 H 0.07 0.40 7.15 -51.93 -0.37 0.03 16 35 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.36 6.67 -51.92 -0.35 0.02 16 38 H 0.05 0.27 6.67 -51.93 -0.35 -0.08 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.68 7.15 -51.92 -0.37 0.31 16 41 H 0.09 0.55 6.12 -51.93 -0.32 0.23 16 42 H 0.13 1.82 7.19 -51.93 -0.37 1.45 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.07 0.67 6.33 -51.93 -0.33 0.34 16 45 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 46 H 0.05 0.71 7.69 -51.92 -0.40 0.31 16 47 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 48 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.07 0.97 6.55 -51.93 -0.34 0.63 16 50 H 0.10 1.74 8.10 -51.93 -0.42 1.32 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -35.09 380.25 -8.46 -43.55 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -7.64 Total: 8.90 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -0.37 Total: 7.28 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -1.25 Total: -53.54 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.21 Total: -26.22 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.09 -8.46 -43.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754574660.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.266 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds