Wall clock time and date at job start Sat Apr 11 2020 05:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34782 * 120.00066 * 2 1 4 4 O 1.21285 * 119.99633 * 185.62439 * 3 2 1 5 5 C 1.50693 * 120.00201 * 5.62235 * 3 2 1 6 6 H 1.08999 * 108.94218 * 42.44212 * 5 3 2 7 7 C 1.46284 * 108.96600 * 161.20700 * 5 3 2 8 8 C 1.54190 * 112.07838 * 181.56178 * 7 5 3 9 9 C 1.50410 * 108.77284 * 282.18763 * 8 7 5 10 10 O 1.44187 * 112.77446 * 92.57437 * 9 8 7 11 11 C 1.44190 * 116.92684 * 318.48392 * 10 9 8 12 12 C 1.50412 * 112.78128 * 318.47255 * 11 10 9 13 13 C 1.46505 * 120.00127 * 180.02562 * 2 1 3 14 14 C 1.53938 * 113.72775 * 305.24360 * 13 2 1 15 15 N 1.47962 * 86.29943 * 138.02133 * 14 13 2 16 16 C 1.46898 * 111.00106 * 222.46438 * 15 14 13 17 17 C 1.50700 * 109.47361 * 169.99958 * 16 15 14 18 18 O 1.21288 * 119.99781 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00136 * 180.02562 * 17 16 15 20 20 C 1.37091 * 120.00105 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00138 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00081 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00101 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00348 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47542 * 89.99534 * 24 22 20 26 26 H 1.48493 * 109.47542 * 210.00300 * 24 22 20 27 27 H 1.48503 * 109.46714 * 329.99925 * 24 22 20 28 28 C 1.48179 * 90.67621 * 335.40537 * 15 14 13 29 29 H 1.08992 * 109.47366 * 205.32761 * 1 2 3 30 30 H 1.09009 * 109.47138 * 325.32879 * 1 2 3 31 31 H 1.09001 * 109.47167 * 85.32079 * 1 2 3 32 32 H 1.08999 * 108.95971 * 302.23533 * 7 5 3 33 33 H 1.09001 * 108.95754 * 60.97516 * 7 5 3 34 34 H 1.09003 * 109.59138 * 41.97853 * 8 7 5 35 35 H 1.09008 * 109.58860 * 162.26208 * 8 7 5 36 36 H 1.08993 * 108.83074 * 213.42606 * 9 8 7 37 37 H 1.09007 * 108.82419 * 331.84162 * 9 8 7 38 38 H 1.09001 * 108.82091 * 79.32397 * 11 10 9 39 39 H 1.08999 * 108.81993 * 197.62168 * 11 10 9 40 40 H 1.09007 * 109.58245 * 332.78671 * 12 11 10 41 41 H 1.08994 * 109.58893 * 212.36578 * 12 11 10 42 42 H 1.08994 * 113.01094 * 173.60679 * 13 2 1 43 43 H 1.09005 * 113.75422 * 252.38821 * 14 13 2 44 44 H 1.08998 * 113.76472 * 23.65058 * 14 13 2 45 45 H 1.08997 * 109.47412 * 290.00787 * 16 15 14 46 46 H 1.09007 * 109.46503 * 50.00618 * 16 15 14 47 47 H 0.97008 * 119.99949 * 359.97438 * 19 17 16 48 48 H 0.97006 * 120.00540 * 180.02562 * 23 22 20 49 49 H 1.09002 * 113.66281 * 270.26926 * 28 15 14 50 50 H 1.09006 * 113.92703 * 138.95033 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3473 1.1697 -0.1029 5 6 1.3909 2.4692 0.1279 6 1 0.6170 2.3595 0.8875 7 6 2.3242 3.5145 0.5476 8 6 1.6235 4.8746 0.7385 9 6 1.3884 5.4918 -0.6129 10 8 0.0927 5.1683 -1.1565 11 6 -0.3648 3.8110 -0.9903 12 6 0.7222 2.7976 -1.2223 13 6 2.1975 -1.2688 -0.0006 14 6 1.8030 -2.2123 1.1500 15 7 1.8521 -3.2995 0.1475 16 6 0.7171 -4.2177 0.3105 17 6 0.6603 -5.1598 -0.8643 18 8 1.4845 -5.0749 -1.7501 19 7 -0.3064 -6.0965 -0.9308 20 6 -0.3584 -6.9532 -1.9998 21 1 0.3750 -6.8772 -2.7890 22 6 -1.3547 -7.9194 -2.0680 23 7 -1.4043 -8.7409 -3.0925 24 14 -2.6237 -8.0505 -0.7036 25 1 -3.7866 -7.1845 -1.0241 26 1 -3.0749 -9.4599 -0.5809 27 1 -2.0182 -7.6113 0.5793 28 6 1.5998 -2.3288 -0.9433 29 1 -0.3634 -0.9288 0.4396 30 1 -0.3634 0.8452 0.5846 31 1 -0.3633 0.0838 -1.0242 32 1 2.7867 3.2190 1.4893 33 1 3.1008 3.6207 -0.2099 34 1 0.6690 4.7263 1.2436 35 1 2.2556 5.5306 1.3371 36 1 1.4720 6.5749 -0.5243 37 1 2.1554 5.1355 -1.3006 38 1 -0.7475 3.6905 0.0232 39 1 -1.1756 3.6245 -1.6945 40 1 1.4642 3.2079 -1.9073 41 1 0.2917 1.8908 -1.6470 42 1 3.2739 -1.1392 -0.1122 43 1 2.5619 -2.2976 1.9277 44 1 0.8053 -2.0267 1.5478 45 1 0.8420 -4.7901 1.2296 46 1 -0.2089 -3.6450 0.3621 47 1 -0.9654 -6.1646 -0.2221 48 1 -2.1000 -9.4152 -3.1404 49 1 0.5420 -2.1783 -1.1591 50 1 2.1954 -2.5056 -1.8390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754574660.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:44 Heat of formation + Delta-G solvation = -95.237530 kcal Electronic energy + Delta-G solvation = -30260.729871 eV Core-core repulsion = 26095.523371 eV Total energy + Delta-G solvation = -4165.206500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.11566 -41.06845 -39.87138 -39.18184 -36.25889 -35.93981 -35.61988 -33.78232 -33.33452 -31.45643 -28.83891 -28.10598 -27.39218 -27.10073 -26.55680 -24.95823 -22.72823 -21.49508 -21.30034 -20.86901 -20.30691 -19.94684 -18.57828 -17.89200 -17.84383 -17.59624 -16.97894 -16.87363 -16.69757 -16.43258 -15.84938 -15.57493 -15.49214 -15.08653 -14.95761 -14.70436 -14.51832 -14.34000 -14.24710 -13.94206 -13.84755 -13.67181 -13.52583 -13.36238 -13.23566 -13.13104 -12.90228 -12.46830 -12.42389 -12.33796 -12.18950 -11.98795 -11.85581 -11.79347 -11.71566 -11.51139 -11.41328 -10.73432 -10.44550 -10.42867 -10.26197 -9.78808 -9.71152 -8.41785 -6.03353 1.30047 1.35570 1.45175 1.48379 1.81266 1.93957 2.23063 2.67220 2.88446 3.07773 3.14190 3.34540 3.47885 3.58876 3.69021 3.72471 3.94005 4.04199 4.05581 4.07997 4.12916 4.25632 4.31147 4.34443 4.40343 4.45980 4.47348 4.56588 4.60354 4.69079 4.69781 4.77307 4.80398 4.86794 4.88845 4.97064 5.05624 5.10801 5.12099 5.21999 5.28549 5.32543 5.42699 5.52805 5.86994 5.97512 6.30667 6.33540 6.58268 6.87247 7.07563 7.38113 7.95700 8.75924 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.002128 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.433563 B =13153.578046 C =13738.895282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.601 5.601 3 C 0.512 3.488 4 O -0.584 6.584 5 C -0.093 4.093 6 H 0.125 0.875 7 C -0.110 4.110 8 C -0.141 4.141 9 C 0.057 3.943 10 O -0.416 6.416 11 C 0.065 3.935 12 C -0.142 4.142 13 C 0.121 3.879 14 C 0.007 3.993 15 N -0.484 5.484 16 C 0.024 3.976 17 C 0.449 3.551 18 O -0.612 6.612 19 N -0.589 5.589 20 C -0.328 4.328 21 H 0.052 0.948 22 C -0.018 4.018 23 N -0.935 5.935 24 Si 0.968 3.032 25 H -0.254 1.254 26 H -0.277 1.277 27 H -0.230 1.230 28 C 0.010 3.990 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.122 0.878 46 H 0.097 0.903 47 H 0.391 0.609 48 H 0.279 0.721 49 H 0.084 0.916 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.169 28.709 16.069 33.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.332 5.332 3 C 0.302 3.698 4 O -0.464 6.464 5 C -0.113 4.113 6 H 0.143 0.857 7 C -0.148 4.148 8 C -0.178 4.178 9 C -0.019 4.019 10 O -0.336 6.336 11 C -0.011 4.011 12 C -0.180 4.180 13 C 0.016 3.984 14 C -0.122 4.122 15 N -0.207 5.207 16 C -0.108 4.108 17 C 0.236 3.764 18 O -0.496 6.496 19 N -0.232 5.232 20 C -0.458 4.458 21 H 0.070 0.930 22 C -0.216 4.216 23 N -0.576 5.576 24 Si 0.787 3.213 25 H -0.178 1.178 26 H -0.202 1.202 27 H -0.153 1.153 28 C -0.119 4.119 29 H 0.103 0.897 30 H 0.124 0.876 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.111 0.889 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.140 0.860 46 H 0.114 0.886 47 H 0.226 0.774 48 H 0.089 0.911 49 H 0.103 0.897 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.634 28.265 15.193 32.197 hybrid contribution -0.719 -0.910 -0.166 1.171 sum -3.353 27.355 15.027 31.390 Atomic orbital electron populations 1.22245 0.77122 1.05341 1.03496 1.47963 1.08289 1.04632 1.72362 1.21393 0.87510 0.86358 0.74540 1.90690 1.16672 1.87863 1.51164 1.20516 0.99447 0.90918 1.00466 0.85729 1.20500 0.97788 0.94564 1.01975 1.21862 1.02420 0.95773 0.97788 1.22428 0.84481 1.00923 0.94030 1.88244 1.35980 1.28998 1.80368 1.22390 0.95478 0.80235 1.03027 1.21949 0.99271 1.01342 0.95438 1.22840 0.97816 0.81704 0.96023 1.24516 1.03747 0.88286 0.95695 1.68375 1.37644 1.10081 1.04606 1.22452 0.95294 0.96054 0.96999 1.20885 0.82269 0.83785 0.89421 1.90564 1.42185 1.73820 1.43069 1.42014 1.28508 1.31027 1.21601 1.18967 1.14051 1.12106 1.00636 0.93024 1.26177 1.00226 0.94615 1.00600 1.69815 1.35449 1.20163 1.32165 0.85331 0.78279 0.79055 0.78622 1.17776 1.20243 1.15276 1.24226 1.00830 0.90534 0.96338 0.89720 0.87611 0.91407 0.91670 0.92860 0.89470 0.88700 0.88374 0.94059 0.90878 0.88072 0.91815 0.88946 0.88059 0.87898 0.87593 0.86025 0.88556 0.77372 0.91144 0.89749 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 7.99 127.77 1.02 1.58 16 2 N -0.60 -10.71 3.10 -825.95 -2.56 -13.27 16 3 C 0.51 10.57 6.75 87.65 0.59 11.16 16 4 O -0.58 -17.75 15.39 -3.05 -0.05 -17.80 16 5 C -0.09 -1.16 1.33 -13.20 -0.02 -1.18 16 6 H 0.13 0.80 6.02 -2.39 -0.01 0.79 16 7 C -0.11 -1.51 3.99 28.93 0.12 -1.40 16 8 C -0.14 -1.27 5.61 30.16 0.17 -1.10 16 9 C 0.06 0.68 6.27 71.14 0.45 1.12 16 10 O -0.42 -6.19 10.88 -148.98 -1.62 -7.81 16 11 C 0.06 0.62 6.26 71.15 0.45 1.07 16 12 C -0.14 -1.68 4.74 30.16 0.14 -1.54 16 13 C 0.12 2.87 4.43 46.45 0.21 3.07 16 14 C 0.01 0.13 7.46 86.41 0.64 0.77 16 15 N -0.48 -14.29 5.95 -909.80 -5.42 -19.71 16 16 C 0.02 0.68 5.31 85.56 0.45 1.13 16 17 C 0.45 19.89 7.59 87.66 0.67 20.56 16 18 O -0.61 -34.16 15.14 -3.06 -0.05 -34.20 16 19 N -0.59 -27.12 5.09 -307.00 -1.56 -28.68 16 20 C -0.33 -19.09 10.16 84.04 0.85 -18.23 16 21 H 0.05 3.62 7.39 -2.91 -0.02 3.60 16 22 C -0.02 -0.97 5.50 84.93 0.47 -0.51 16 23 N -0.94 -56.16 13.96 21.66 0.30 -55.86 16 24 Si 0.97 37.63 27.74 68.60 1.90 39.53 16 25 H -0.25 -9.17 7.11 99.48 0.71 -8.47 16 26 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 27 H -0.23 -7.39 6.52 99.48 0.65 -6.74 16 28 C 0.01 0.31 6.23 86.36 0.54 0.84 16 29 H 0.08 0.68 6.14 -2.39 -0.01 0.66 16 30 H 0.11 0.35 6.14 -2.38 -0.01 0.33 16 31 H 0.07 0.62 7.20 -2.39 -0.02 0.60 16 32 H 0.06 0.96 8.12 -2.39 -0.02 0.94 16 33 H 0.05 0.99 7.23 -2.39 -0.02 0.97 16 34 H 0.09 0.61 7.15 -2.39 -0.02 0.60 16 35 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.04 0.57 6.67 -2.38 -0.02 0.56 16 38 H 0.07 0.42 6.67 -2.39 -0.02 0.40 16 39 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 1.03 7.15 -2.38 -0.02 1.02 16 41 H 0.09 0.99 6.12 -2.39 -0.01 0.97 16 42 H 0.10 3.00 7.19 -2.39 -0.02 2.98 16 43 H 0.10 1.89 8.14 -2.38 -0.02 1.88 16 44 H 0.11 1.36 6.33 -2.39 -0.02 1.35 16 45 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 46 H 0.10 1.99 7.69 -2.38 -0.02 1.97 16 47 H 0.39 14.52 5.76 -92.70 -0.53 13.99 16 48 H 0.28 15.28 8.31 -92.70 -0.77 14.51 16 49 H 0.08 2.17 6.55 -2.39 -0.02 2.16 16 50 H 0.06 2.19 8.10 -2.38 -0.02 2.18 16 Total: -1.00 -86.27 380.25 -1.93 -88.19 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.38 Total: 32.25 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 6.74 Total: 17.35 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -9.23 Total: -117.51 kcal Atomic # 8 Polarization: -58.11 SS G_CDS: -1.71 Total: -59.82 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 1.90 Total: 39.53 kcal Total: -86.27 -1.93 -88.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754574660.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.044 kcal (2) G-P(sol) polarization free energy of solvation -86.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds