Wall clock time and date at job start Sat Apr 11 2020 05:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46766 * 124.34874 * 2 1 4 4 C 1.54473 * 105.55331 * 197.07519 * 3 2 1 5 5 C 1.54635 * 101.76285 * 334.54209 * 4 3 2 6 6 H 1.08995 * 110.48567 * 143.47538 * 5 4 3 7 7 C 1.53001 * 110.48448 * 266.11745 * 5 4 3 8 8 C 1.50695 * 109.46956 * 184.99971 * 7 5 4 9 9 O 1.21282 * 120.00093 * 0.02562 * 8 7 5 10 10 N 1.34778 * 120.00376 * 180.02562 * 8 7 5 11 11 C 1.46491 * 120.00529 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47311 * 176.60829 * 11 10 8 13 13 N 1.46498 * 109.54025 * 54.53315 * 12 11 10 14 14 C 1.36944 * 120.00160 * 62.05013 * 13 12 11 15 15 H 1.07998 * 120.00010 * 354.01912 * 14 13 12 16 16 C 1.38815 * 120.00116 * 174.01850 * 14 13 12 17 17 N 1.31617 * 119.99985 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99937 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46993 * 60.00266 * 18 16 14 20 20 H 1.48503 * 109.47087 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47507 * 300.00267 * 18 16 14 22 22 C 1.53177 * 109.54358 * 294.26850 * 12 11 10 23 23 C 1.53092 * 109.15999 * 183.15191 * 22 12 11 24 24 O 1.42902 * 109.41764 * 57.60882 * 23 22 12 25 25 C 1.42903 * 114.09813 * 298.84185 * 24 23 22 26 26 C 1.53085 * 109.41545 * 61.15495 * 25 24 23 27 27 C 1.34617 * 124.47027 * 180.02562 * 2 1 3 28 28 O 1.21275 * 124.91073 * 359.59228 * 27 2 1 29 29 H 1.09004 * 109.47056 * 90.00076 * 1 2 3 30 30 H 1.08995 * 109.47086 * 209.99609 * 1 2 3 31 31 H 1.08996 * 109.47317 * 329.99891 * 1 2 3 32 32 H 1.08999 * 110.24446 * 78.02788 * 3 2 1 33 33 H 1.09006 * 110.24583 * 316.12536 * 3 2 1 34 34 H 1.09003 * 110.96854 * 92.65715 * 4 3 2 35 35 H 1.08999 * 110.97441 * 216.38947 * 4 3 2 36 36 H 1.08998 * 109.47290 * 304.99818 * 7 5 4 37 37 H 1.09003 * 109.46897 * 64.99875 * 7 5 4 38 38 H 0.97004 * 119.99232 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47232 * 296.60794 * 11 10 8 40 40 H 1.08996 * 109.47131 * 56.60970 * 11 10 8 41 41 H 0.96997 * 120.00410 * 242.04384 * 13 12 11 42 42 H 0.96992 * 120.00184 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.51926 * 303.05399 * 22 12 11 44 44 H 1.09000 * 109.52124 * 63.24267 * 22 12 11 45 45 H 1.08993 * 109.48084 * 297.61887 * 23 22 12 46 46 H 1.09000 * 109.47693 * 177.58769 * 23 22 12 47 47 H 1.09006 * 109.47372 * 301.17586 * 25 24 23 48 48 H 1.08997 * 109.48064 * 181.14293 * 25 24 23 49 49 H 1.09007 * 109.52509 * 182.48617 * 26 25 24 50 50 H 1.09000 * 109.52497 * 62.30026 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7013 0.7510 -0.4370 5 6 3.6927 -0.7357 -0.0117 6 1 4.2358 -1.3427 -0.7359 7 6 4.2972 -0.8967 1.3846 8 6 4.3905 -2.3616 1.7256 9 8 4.0113 -3.1948 0.9301 10 7 4.8953 -2.7459 2.9147 11 6 4.9865 -4.1699 3.2461 12 6 5.6676 -4.3345 4.6063 13 7 4.9571 -3.5376 5.6096 14 6 3.6475 -3.8125 5.9004 15 1 3.1098 -4.5508 5.3240 16 6 3.0110 -3.1422 6.9360 17 7 3.6661 -2.2420 7.6381 18 14 1.2244 -3.5166 7.3322 19 1 1.0878 -4.9500 7.6952 20 1 0.7826 -2.6726 8.4714 21 1 0.3821 -3.2244 6.1445 22 6 7.1221 -3.8637 4.5114 23 6 7.8170 -4.1052 5.8540 24 8 7.7336 -5.4917 6.1895 25 6 6.3977 -5.9768 6.3381 26 6 5.6458 -5.8106 5.0150 27 6 2.2269 -1.1098 -0.0005 28 8 1.7998 -2.2449 0.0061 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3634 0.8899 0.5138 32 1 2.3307 1.6428 1.0004 33 1 1.8972 1.9391 -0.7088 34 1 3.8260 0.8475 -1.5155 35 1 4.4753 1.3048 0.0944 36 1 5.2937 -0.4554 1.4022 37 1 3.6639 -0.3931 2.1150 38 1 5.1990 -2.0794 3.5508 39 1 3.9851 -4.5983 3.2870 40 1 5.5707 -4.6839 2.4828 41 1 5.4144 -2.8154 6.0679 42 1 3.2212 -1.7733 8.3614 43 1 7.6357 -4.4232 3.7296 44 1 7.1459 -2.7999 4.2750 45 1 7.3278 -3.5138 6.6280 46 1 8.8640 -3.8116 5.7793 47 1 5.8900 -5.4099 7.1185 48 1 6.4224 -7.0315 6.6122 49 1 4.6138 -6.1392 5.1387 50 1 6.1296 -6.4094 4.2433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754737685.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:58 Heat of formation + Delta-G solvation = -127.311157 kcal Electronic energy + Delta-G solvation = -31424.291141 eV Core-core repulsion = 27257.693824 eV Total energy + Delta-G solvation = -4166.597317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.71165 -40.91217 -39.86937 -37.44716 -37.28748 -35.07849 -34.65577 -33.82196 -31.98148 -31.00770 -30.74905 -28.35472 -27.78363 -26.28802 -25.88643 -24.41476 -23.44075 -22.29485 -21.33730 -20.38343 -20.09642 -19.14246 -18.29545 -17.51296 -17.31692 -17.07028 -16.85041 -16.74850 -16.64586 -16.13001 -15.99838 -15.73865 -15.40362 -15.31461 -14.84835 -14.66088 -14.40190 -14.15875 -14.06579 -13.76129 -13.68620 -13.42232 -13.27990 -13.20608 -13.11803 -12.96156 -12.87007 -12.79117 -12.69490 -12.29169 -12.12661 -12.10149 -11.81663 -11.77568 -11.41306 -11.13952 -11.02889 -10.79908 -10.57308 -10.32064 -9.83664 -9.65265 -8.99171 -7.94239 -5.19729 1.40924 1.43012 1.47663 1.60272 1.82868 2.13738 2.41115 2.53935 3.07579 3.38083 3.40079 3.56687 3.75028 3.79985 3.88266 3.97004 4.04425 4.15646 4.16333 4.24083 4.30119 4.41775 4.48194 4.50331 4.58257 4.60230 4.65428 4.73822 4.77209 4.79379 4.80741 4.83646 4.88978 4.94893 5.03566 5.09636 5.12462 5.22038 5.23391 5.27926 5.34339 5.57406 5.65330 5.68748 6.15606 6.28692 6.36742 6.75982 7.26130 7.38088 7.46680 8.06182 8.34946 9.27405 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.003774 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.842734 B = 7417.798292 C = 8971.072150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.633 5.633 3 C 0.094 3.906 4 C -0.113 4.113 5 C -0.104 4.104 6 H 0.098 0.902 7 C -0.115 4.115 8 C 0.487 3.513 9 O -0.574 6.574 10 N -0.702 5.702 11 C 0.129 3.871 12 C 0.189 3.811 13 N -0.709 5.709 14 C -0.214 4.214 15 H 0.056 0.944 16 C -0.054 4.054 17 N -0.954 5.954 18 Si 0.943 3.057 19 H -0.284 1.284 20 H -0.292 1.292 21 H -0.297 1.297 22 C -0.140 4.140 23 C 0.064 3.936 24 O -0.397 6.397 25 C 0.078 3.922 26 C -0.152 4.152 27 C 0.495 3.505 28 O -0.568 6.568 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.097 0.903 38 H 0.407 0.593 39 H 0.020 0.980 40 H 0.061 0.939 41 H 0.379 0.621 42 H 0.250 0.750 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.038 0.962 46 H 0.115 0.885 47 H 0.036 0.964 48 H 0.097 0.903 49 H 0.055 0.945 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.290 11.266 -13.763 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.368 5.368 3 C -0.027 4.027 4 C -0.150 4.150 5 C -0.126 4.126 6 H 0.117 0.883 7 C -0.155 4.155 8 C 0.274 3.726 9 O -0.453 6.453 10 N -0.353 5.353 11 C 0.002 3.998 12 C 0.098 3.902 13 N -0.350 5.350 14 C -0.346 4.346 15 H 0.074 0.926 16 C -0.248 4.248 17 N -0.605 5.605 18 Si 0.775 3.225 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.224 1.224 22 C -0.178 4.178 23 C -0.013 4.013 24 O -0.316 6.316 25 C 0.001 3.999 26 C -0.192 4.192 27 C 0.283 3.717 28 O -0.446 6.446 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.115 0.885 38 H 0.243 0.757 39 H 0.039 0.961 40 H 0.079 0.921 41 H 0.214 0.786 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.057 0.943 46 H 0.133 0.867 47 H 0.054 0.946 48 H 0.115 0.885 49 H 0.073 0.927 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.691 9.902 -14.259 18.270 hybrid contribution -1.918 -0.094 1.010 2.169 sum 3.773 9.809 -13.250 16.912 Atomic orbital electron populations 1.21597 0.78023 1.03009 1.02329 1.48518 1.07013 1.08054 1.73258 1.22438 0.90537 0.86165 1.03567 1.22779 0.97270 0.90962 1.03979 1.21716 0.91962 1.00619 0.98279 0.88339 1.21602 1.05836 0.91653 0.96395 1.21400 0.76787 0.92879 0.81539 1.90763 1.48586 1.55548 1.50411 1.45717 1.63556 1.08445 1.17561 1.21535 0.98852 0.82208 0.97164 1.20000 0.91531 0.91339 0.87359 1.42428 1.09496 1.37801 1.45309 1.19073 0.88727 1.16900 1.09927 0.92616 1.25099 1.00259 1.00359 0.99046 1.69711 1.36757 1.29771 1.24255 0.85679 0.82787 0.77337 0.76676 1.21108 1.21839 1.22405 1.22289 0.93668 1.02837 0.98993 1.22612 1.01637 0.81988 0.95034 1.87794 1.27075 1.25980 1.90795 1.22328 0.82232 0.99213 0.96144 1.22432 1.00512 0.97662 0.98565 1.21668 0.90954 0.84171 0.74950 1.90740 1.79498 1.23638 1.50744 0.91583 0.94000 0.88123 0.89783 0.87598 0.88116 0.85343 0.83278 0.88452 0.75668 0.96146 0.92094 0.78647 0.94135 0.89487 0.89529 0.94347 0.86747 0.94591 0.88458 0.92670 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.90 10.97 127.77 1.40 3.30 16 2 N -0.63 -14.63 3.34 -842.62 -2.81 -17.45 16 3 C 0.09 1.13 7.34 86.83 0.64 1.77 16 4 C -0.11 -1.15 6.71 31.65 0.21 -0.94 16 5 C -0.10 -2.34 2.54 -10.80 -0.03 -2.37 16 6 H 0.10 2.49 7.90 -2.39 -0.02 2.47 16 7 C -0.11 -2.60 5.11 29.85 0.15 -2.44 16 8 C 0.49 16.95 7.64 87.66 0.67 17.62 16 9 O -0.57 -25.64 13.99 16.61 0.23 -25.40 16 10 N -0.70 -23.88 5.13 -463.08 -2.38 -26.25 16 11 C 0.13 4.87 4.36 86.38 0.38 5.24 16 12 C 0.19 6.69 0.41 3.73 0.00 6.69 16 13 N -0.71 -30.71 3.61 -302.79 -1.09 -31.80 16 14 C -0.21 -11.01 8.67 84.03 0.73 -10.28 16 15 H 0.06 3.00 6.78 -2.91 -0.02 2.98 16 16 C -0.05 -2.95 5.50 84.86 0.47 -2.48 16 17 N -0.95 -53.80 13.07 21.65 0.28 -53.52 16 18 Si 0.94 46.16 29.55 68.60 2.03 48.19 16 19 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 21 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 22 C -0.14 -3.92 4.80 30.68 0.15 -3.77 16 23 C 0.06 1.87 6.67 72.01 0.48 2.35 16 24 O -0.40 -13.25 10.77 -148.98 -1.60 -14.85 16 25 C 0.08 2.72 6.68 72.01 0.48 3.20 16 26 C -0.15 -5.37 4.78 30.68 0.15 -5.22 16 27 C 0.49 15.97 7.03 87.87 0.62 16.59 16 28 O -0.57 -25.90 15.80 16.63 0.26 -25.64 16 29 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.04 1.13 7.93 -2.39 -0.02 1.11 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.13 0.50 7.88 -2.39 -0.02 0.48 16 36 H 0.15 1.94 8.11 -2.39 -0.02 1.92 16 37 H 0.10 2.19 8.12 -2.39 -0.02 2.17 16 38 H 0.41 12.67 7.43 -92.71 -0.69 11.98 16 39 H 0.02 0.93 7.47 -2.39 -0.02 0.91 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.38 17.33 6.82 -92.71 -0.63 16.70 16 42 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.09 2.15 7.40 -2.39 -0.02 2.13 16 45 H 0.04 1.30 7.15 -2.39 -0.02 1.28 16 46 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.04 1.50 7.75 -2.38 -0.02 1.48 16 48 H 0.10 2.98 8.14 -2.39 -0.02 2.97 16 49 H 0.05 2.18 7.20 -2.38 -0.02 2.16 16 50 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -81.18 393.45 1.04 -80.13 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: -0.37 Total: 37.35 kcal Atomic # 6 Polarization: 22.75 SS G_CDS: 6.49 Total: 29.25 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -6.00 Total: -129.02 kcal Atomic # 8 Polarization: -64.79 SS G_CDS: -1.11 Total: -65.90 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -81.18 1.04 -80.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754737685.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.176 kcal (2) G-P(sol) polarization free energy of solvation -81.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds