Wall clock time and date at job start Sat Apr 11 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 114.00089 * 2 1 4 4 C 1.52996 * 109.47131 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47407 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47558 * 180.02562 * 5 4 3 7 7 C 1.46899 * 111.00016 * 293.95526 * 6 5 4 8 8 C 1.46896 * 111.00125 * 169.99975 * 6 5 4 9 9 C 1.53001 * 109.46966 * 190.00166 * 8 6 5 10 10 N 1.46500 * 109.47049 * 180.02562 * 9 8 6 11 11 C 1.34779 * 119.99738 * 179.97438 * 10 9 8 12 12 O 1.21589 * 120.00349 * 359.97438 * 11 10 9 13 13 N 1.34787 * 119.99663 * 179.97438 * 11 10 9 14 14 C 1.40196 * 119.99563 * 179.97438 * 13 11 10 15 15 C 1.40395 * 125.97533 * 359.97438 * 14 13 11 16 16 C 1.35243 * 107.86535 * 179.71691 * 15 14 13 17 17 N 1.34960 * 107.86064 * 0.42509 * 16 15 14 18 18 C 1.46500 * 125.97985 * 179.83521 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71356 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31213 * 125.96849 * 179.97438 * 14 13 11 28 28 H 1.09004 * 109.47381 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47145 * 300.00431 * 1 2 3 30 30 H 1.09009 * 109.47037 * 60.00343 * 1 2 3 31 31 H 1.09003 * 109.47503 * 59.99727 * 3 2 1 32 32 H 1.09006 * 109.47330 * 299.99390 * 3 2 1 33 33 H 1.09003 * 109.47536 * 59.99809 * 4 3 2 34 34 H 1.08997 * 109.47350 * 300.00113 * 4 3 2 35 35 H 1.09003 * 109.46918 * 59.99444 * 5 4 3 36 36 H 1.09007 * 109.46747 * 299.99860 * 5 4 3 37 37 H 1.09004 * 109.46913 * 296.04653 * 7 6 5 38 38 H 1.09008 * 109.47124 * 56.04044 * 7 6 5 39 39 H 1.08996 * 109.47723 * 176.04088 * 7 6 5 40 40 H 1.08999 * 109.47285 * 70.00329 * 8 6 5 41 41 H 1.09001 * 109.46964 * 309.99597 * 8 6 5 42 42 H 1.08994 * 109.47616 * 59.99670 * 9 8 6 43 43 H 1.09001 * 109.47145 * 299.99956 * 9 8 6 44 44 H 0.96998 * 120.00159 * 359.97438 * 10 9 8 45 45 H 0.96998 * 119.99666 * 359.97438 * 13 11 10 46 46 H 1.08003 * 126.06887 * 0.02562 * 15 14 13 47 47 H 1.08007 * 126.06985 * 180.26350 * 16 15 14 48 48 H 1.09004 * 109.47078 * 4.72118 * 18 17 16 49 49 H 1.08993 * 109.47364 * 244.71890 * 18 17 16 50 50 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6222 2.4663 0.0000 7 6 6.1031 1.8702 1.2535 8 6 6.2536 3.7710 -0.2387 9 6 7.7519 3.5759 -0.4797 10 7 8.3818 4.8771 -0.7172 11 6 9.7065 4.9513 -0.9540 12 8 10.3790 3.9384 -0.9701 13 7 10.2859 6.1484 -1.1730 14 6 11.6640 6.2256 -1.4188 15 6 12.5555 5.1421 -1.4647 16 6 13.7881 5.6300 -1.7328 17 7 13.6872 6.9712 -1.8435 18 6 14.7872 7.8966 -2.1263 19 6 14.4465 8.7269 -3.3370 20 1 13.5046 8.5802 -3.8446 21 6 15.3371 9.6737 -3.7965 22 7 16.4818 9.8560 -3.1751 23 14 14.9145 10.7034 -5.2967 24 1 16.0269 11.6455 -5.5799 25 1 14.7103 9.8124 -6.4671 26 1 13.6703 11.4708 -5.0358 27 7 12.3460 7.3233 -1.6462 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8901 33 1 3.8575 0.6434 -0.8891 34 1 3.8567 0.6438 0.8908 35 1 3.8358 3.1238 0.8895 36 1 3.8365 3.1226 -0.8905 37 1 5.8635 2.5320 2.0859 38 1 5.6196 0.9052 1.4059 39 1 7.1828 1.7311 1.1991 40 1 6.1058 4.4108 0.6312 41 1 5.8027 4.2381 -1.1143 42 1 7.8998 2.9361 -1.3496 43 1 8.2029 3.1088 0.3958 44 1 7.8454 5.6852 -0.7040 45 1 9.7493 6.9564 -1.1606 46 1 12.3013 4.1028 -1.3175 47 1 14.6929 5.0495 -1.8370 48 1 15.6982 7.3300 -2.3192 49 1 14.9411 8.5511 -1.2685 50 1 16.7012 9.3216 -2.3960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173346225.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:05 Heat of formation + Delta-G solvation = 12.746001 kcal Electronic energy + Delta-G solvation = -27781.966083 eV Core-core repulsion = 23653.734851 eV Total energy + Delta-G solvation = -4128.231232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.77005 -39.68678 -38.86815 -38.03378 -35.29841 -34.65994 -33.65416 -32.84797 -30.88111 -29.38622 -29.08063 -27.88389 -26.68551 -26.12347 -24.50806 -23.11367 -22.14954 -21.58742 -21.30662 -20.53148 -19.84132 -18.02498 -17.17504 -17.14938 -16.85671 -16.73630 -16.34194 -16.15694 -15.59138 -15.47166 -14.94520 -14.75060 -14.73603 -14.29008 -14.10238 -13.95563 -13.77392 -13.61110 -13.11823 -12.77808 -12.46839 -12.37966 -12.34314 -12.27428 -12.21639 -11.84197 -11.79852 -11.57564 -11.47710 -11.22958 -11.14106 -10.80285 -10.43626 -10.20557 -10.15486 -10.13011 -9.72284 -9.27782 -8.96487 -8.89206 -8.56767 -8.15724 -7.45227 -6.56632 -4.30582 2.27038 2.61122 3.02788 3.07418 3.38563 3.40173 3.44836 3.59369 3.73038 3.80056 4.28912 4.33486 4.42369 4.44589 4.56219 4.60378 4.67109 4.77186 4.84088 4.87323 4.91856 4.97827 5.04726 5.11466 5.15173 5.17125 5.19067 5.40775 5.47602 5.56780 5.62734 5.64012 5.73680 5.76130 6.15045 6.22697 6.43912 6.47831 6.49234 6.51396 6.62891 6.67314 6.79263 6.97959 7.44310 7.64895 7.87090 7.91358 8.36406 8.56304 8.58047 8.65428 9.37699 10.80871 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.028414 B = 0.001357 C = 0.001313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.201994 B =20634.946820 C =21322.051624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.062 3.938 4 C -0.117 4.117 5 C 0.060 3.940 6 N -0.536 5.536 7 C 0.014 3.986 8 C 0.045 3.955 9 C 0.143 3.857 10 N -0.745 5.745 11 C 0.715 3.285 12 O -0.566 6.566 13 N -0.644 5.644 14 C 0.277 3.723 15 C -0.283 4.283 16 C 0.050 3.950 17 N -0.319 5.319 18 C 0.250 3.750 19 C -0.608 4.608 20 H 0.063 0.937 21 C 0.023 3.977 22 N -0.905 5.905 23 Si 1.077 2.923 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.285 1.285 27 N -0.306 5.306 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.028 0.972 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.396 0.604 45 H 0.407 0.593 46 H 0.162 0.838 47 H 0.167 0.833 48 H 0.046 0.954 49 H 0.034 0.966 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.601 -15.776 9.034 34.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.015 4.015 4 C -0.155 4.155 5 C -0.068 4.068 6 N -0.261 5.261 7 C -0.134 4.134 8 C -0.084 4.084 9 C 0.018 3.982 10 N -0.402 5.402 11 C 0.414 3.586 12 O -0.441 6.441 13 N -0.294 5.294 14 C 0.023 3.977 15 C -0.315 4.315 16 C -0.099 4.099 17 N -0.101 5.101 18 C 0.132 3.868 19 C -0.646 4.646 20 H 0.082 0.918 21 C -0.182 4.182 22 N -0.541 5.541 23 Si 0.904 3.096 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.212 1.212 27 N -0.136 5.136 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.229 0.771 45 H 0.241 0.759 46 H 0.180 0.820 47 H 0.185 0.815 48 H 0.064 0.936 49 H 0.052 0.948 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -28.117 -14.660 7.525 32.590 hybrid contribution -1.550 -0.454 1.790 2.411 sum -29.666 -15.115 9.315 34.573 Atomic orbital electron populations 1.22753 0.80848 1.02902 1.00007 1.87878 1.19838 1.27969 1.95426 1.22478 0.94103 0.84757 1.00178 1.21505 0.92360 0.97277 1.04372 1.21991 0.86982 0.96626 1.01233 1.61770 1.05677 1.23007 1.35600 1.22588 1.01938 0.99761 0.89139 1.22256 0.94402 0.90358 1.01366 1.21109 0.90570 0.83875 1.02624 1.44895 1.06847 1.10221 1.78253 1.15561 0.81720 0.83229 0.78136 1.90875 1.61834 1.34046 1.57304 1.41371 1.05650 1.08498 1.73846 1.18785 0.83487 0.93331 1.02097 1.21527 0.90679 1.00551 1.18718 1.22556 0.99754 0.85477 1.02159 1.48748 1.05424 1.05282 1.50630 1.19741 0.81161 0.87964 0.97967 1.22116 1.07016 1.22573 1.12901 0.91847 1.25914 0.92987 0.96571 1.02679 1.70850 1.22630 1.40519 1.20093 0.83422 0.75820 0.75977 0.74417 1.20529 1.21234 1.21174 1.77338 0.89474 1.19793 1.27042 0.89518 0.94077 0.93986 0.93454 0.93148 0.89935 0.90857 0.94507 0.90358 0.95362 0.90741 0.90522 0.93971 0.89896 0.90360 0.91325 0.77053 0.75859 0.82021 0.81537 0.93636 0.94837 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.94 10.70 -35.23 -0.38 -3.32 16 3 C 0.06 0.34 5.94 37.16 0.22 0.56 16 4 C -0.12 -0.67 5.51 -26.73 -0.15 -0.81 16 5 C 0.06 0.31 4.96 -3.82 -0.02 0.29 16 6 N -0.54 -3.51 4.76 -242.91 -1.16 -4.66 16 7 C 0.01 0.08 9.13 60.06 0.55 0.63 16 8 C 0.04 0.27 5.07 -3.83 -0.02 0.25 16 9 C 0.14 1.25 5.60 -4.04 -0.02 1.23 16 10 N -0.74 -7.22 5.56 -65.22 -0.36 -7.58 16 11 C 0.71 10.51 8.53 -86.91 -0.74 9.77 16 12 O -0.57 -10.34 13.47 5.29 0.07 -10.27 16 13 N -0.64 -10.04 5.46 -15.50 -0.08 -10.12 16 14 C 0.28 5.68 8.11 -154.36 -1.25 4.42 16 15 C -0.28 -5.77 9.61 -39.84 -0.38 -6.15 16 16 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 17 N -0.32 -7.56 3.67 -62.56 -0.23 -7.79 16 18 C 0.25 6.39 5.57 -5.19 -0.03 6.36 16 19 C -0.61 -17.23 9.24 -34.44 -0.32 -17.55 16 20 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 21 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 22 N -0.91 -26.48 13.65 55.43 0.76 -25.72 16 23 Si 1.08 25.00 29.90 -169.99 -5.08 19.92 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 27 N -0.31 -7.16 12.42 31.44 0.39 -6.77 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.04 0.15 8.14 -51.92 -0.42 -0.27 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.44 6.47 -51.93 -0.34 0.11 16 35 H 0.04 0.17 8.12 -51.93 -0.42 -0.25 16 36 H 0.08 0.36 7.93 -51.93 -0.41 -0.05 16 37 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.07 0.42 6.30 -51.92 -0.33 0.09 16 39 H 0.08 0.51 6.47 -51.93 -0.34 0.17 16 40 H 0.04 0.23 8.12 -51.93 -0.42 -0.19 16 41 H 0.08 0.44 7.93 -51.93 -0.41 0.03 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.66 6.55 -51.93 -0.34 0.32 16 44 H 0.40 2.59 8.49 -40.82 -0.35 2.24 16 45 H 0.41 5.05 8.84 -40.82 -0.36 4.69 16 46 H 0.16 3.23 5.91 -52.48 -0.31 2.92 16 47 H 0.17 2.78 8.06 -52.48 -0.42 2.35 16 48 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 49 H 0.03 0.89 8.00 -51.93 -0.42 0.47 16 50 H 0.27 7.64 7.22 -40.82 -0.29 7.34 16 LS Contribution 411.39 15.07 6.20 6.20 Total: -1.00 -35.47 411.39 -9.38 -44.85 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -8.16 Total: 3.63 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.34 Total: 1.64 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -0.69 Total: -62.65 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.31 Total: -13.58 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.92 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.47 -9.38 -44.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173346225.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.597 kcal (2) G-P(sol) polarization free energy of solvation -35.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds